RLG00000025642

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000230
Physical Location & Seq
Reverse (-)
47281800 .. 47282948
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025642

Sequence Viewer

Length: 1149 bp
ATGTCGGGATACCCACTACAACTTGATCTGATTAGTAATGGACATATTATGAAGTTATCAGTCGGAACCCCGCCCTCAGATATTTATGTACTTGCTGATACAGGCAGCGCTCTAATGTGGACGCAATGCAAGCCGTGTAACACTTGCTACAAGACCAACTATGCCATGTTCGACCCGAGAAAATCCTCAACTTATAGGAACATTACTTGTTCTGAAAAAGAGTGTCGATTTGTCCACGATTCCAAACCATCGAGCCAGTCAACAAGCTTTTGTAGAAAGCATCCTAAAAGAACGTGTGATTACAATACGACGTATGCAGACTCGACATCCACTGTAGGTGTTTTGGCAAAAGAAACATTTACCTTGACATCCAGGACAGGTGAGGTTGTAACCTTTAAAGAAATTGTCTTTGGGTGTGGGTATTTGACCTATGACCCTGTTTCAACTGGAAATGAAATGGGAATAATTGGGCTTGGACGTGGGCCTTTGTCATTTGTTTCTCAAATTGCTCCACATGTTGGAGGGAACAAATTTTCTTATTGCTTGGTGCCTATGTATAGTGATCCCAAGTTTGAAAGCAAGATCCATTTCGGGAATGGGAGTGAAGTTTTGGGTGAAGGGGTTGTCTCAACACCATTGCTTGATGACAAGTATGCCTATAAGGTGGCGGTAGAGGGAATTTCCATTGGTAATGAATTTATTTCGTTCAACTCAACAGTGAAACCGCTCAAAAAGTTTGAGATGGTTGTCGACTCGGGCACAAGTGTTGGACATCTACCTAGAGATATTTGGGACCGGGTGATAACTCAGCTGAATAAGACGCTTGATCCAGAATTGGAGCCATCCATTGTATACGATGCCACGCAAGACAAAACACATTATTTAAGCTTTAACTCGATGACAATTCCAGACGAACCAAAAGTGGCATTTCATTTCATGGGTGGTGGCAAACTGGAGTTAATCGCTGAACAAATTTTCAACAAATCTCCACAGGATGAGAAAAAAGTCTATTTTGGAATCGGCTCTATGGATATGTATTCTGACGTGGATTTTGGTGTTTTTGGAGCCAGTCTGCAGGGAAATTTGTTGATTGGTTATGACCTCGATAGAAACGTGGCATCCTTCAAGCCAACTAATTGCCTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

383

Amino Acids

42.21

Weight (kDa)

5.79

Isoelectric Point (pI)

27.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 16 - 199 4.3e-50 Xylanase inhibitor N-terminal
Asp PF00026 17 - 67 5.5e-08 Eukaryotic aspartyl protease
Asp PF00026 70 - 375 4.6e-10 Eukaryotic aspartyl protease
TAXi_C PF14541 219 - 376 2.3e-12 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 547
AccB7I CCANNNNNTGG 1 cut(s) 518
AccBSI CCGCTC 1 cut(s) 727
AccI GTMKAC 2 cut(s) 750, 852
AciI CCGC 3 cut(s) 71, 668, 725
AclWI GGATC 3 cut(s) 557, 577, 821
AcsI RAATTY 5 cut(s) 530, 678, 695, 972, 1081
AfaI GTAC 1 cut(s) 90
AfeI AGCGCT 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 518
AflIII ACRYGT 2 cut(s) 293, 514
AgsI TTSAA 5 cut(s) 444, 575, 709, 979, 1126
AjiI CACGTC 2 cut(s) 479, 1045
AjnI CCWGG 1 cut(s) 371
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 3 cut(s) 267, 811, 888
AluI AGCT 3 cut(s) 267, 811, 888
Alw26I GTCTC 1 cut(s) 631
AlwI GGATC 3 cut(s) 557, 577, 821
Ama87I CYCGRG 2 cut(s) 175, 754
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 5 cut(s) 530, 678, 695, 972, 1081
ArsI GACNNNNNNTTYG 2 cut(s) 1034, 1066
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 482, 793
AsuC2I CCSGG 1 cut(s) 797
AsuHPI GGTGA 3 cut(s) 392, 626, 811
AvaI CYCGRG 2 cut(s) 175, 754
AvaII GGWCC 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 761
BanI GGYRCC 1 cut(s) 547
BbvI GCAGC 1 cut(s) 117
BccI CCATC 3 cut(s) 256, 736, 850
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 1 cut(s) 797
BcoDI GTCTC 1 cut(s) 631
BfaI CTAG 1 cut(s) 780
BfmI CTRYAG 2 cut(s) 333, 1073
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 373, 797
Bme18I GGWCC 1 cut(s) 793
BmeT110I CYCGRG 2 cut(s) 175, 754
BmgBI CACGTC 2 cut(s) 479, 1045
BmgT120I GGNCC 2 cut(s) 482, 793
BmiI GGNNCC 5 cut(s) 67, 549, 794, 840, 1066
BmrFI CCNGG 2 cut(s) 373, 797
BmsI GCATC 3 cut(s) 289, 847, 1127
BpmI CTGGAG 1 cut(s) 974
BpuMI CCSGG 1 cut(s) 797
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse1I ACTGG 4 cut(s) 256, 451, 957, 1068
Bse3DI GCAATG 2 cut(s) 131, 635
BseBI CCWGG 1 cut(s) 373
BseGI GGATG 6 cut(s) 280, 326, 368, 842, 1000, 1118
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMI GCAATG 2 cut(s) 131, 635
BseMII CTCAG 2 cut(s) 90, 821
BseNI ACTGG 4 cut(s) 256, 451, 957, 1068
BseSI GKGCMC 1 cut(s) 761
BseXI GCAGC 1 cut(s) 117
BshFI GGCC 1 cut(s) 484
BshNI GGYRCC 1 cut(s) 547
BsiHKCI CYCGRG 2 cut(s) 175, 754
BsiSI CCGG 1 cut(s) 796
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 518
BsmAI GTCTC 1 cut(s) 631
BsmFI GGGAC 1 cut(s) 806
BsnI GGCC 1 cut(s) 484
BsoBI CYCGRG 2 cut(s) 175, 754
Bsp1286I GDGCHC 1 cut(s) 761
Bsp143I GATC 4 cut(s) 25, 562, 582, 826
BspACI CCGC 3 cut(s) 71, 668, 725
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 2 cut(s) 89, 820
BspLI GGNNCC 5 cut(s) 67, 549, 794, 840, 1066
BspMAI CTGCAG 1 cut(s) 1077
BspPI GGATC 3 cut(s) 557, 577, 821
BspT107I GGYRCC 1 cut(s) 547
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 2 cut(s) 131, 635
BsrI ACTGG 4 cut(s) 256, 451, 957, 1068
BssMI GATC 4 cut(s) 25, 562, 582, 826
BssNAI GTATAC 1 cut(s) 853
Bst1107I GTATAC 1 cut(s) 853
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 2 cut(s) 334, 718
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 76, 807
BstF5I GGATG 6 cut(s) 280, 326, 368, 842, 1000, 1118
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 4 cut(s) 28, 565, 585, 829
BstMAI GTCTC 1 cut(s) 631
BstMBI GATC 4 cut(s) 25, 562, 582, 826
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 2 cut(s) 371, 795
BstSFI CTRYAG 2 cut(s) 333, 1073
BstSLI GKGCMC 1 cut(s) 761
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 582
BstYI RGATCY 1 cut(s) 582
BstZ17I GTATAC 1 cut(s) 853
BsuRI GGCC 1 cut(s) 484
BtrI CACGTC 2 cut(s) 479, 1045
BtsCI GGATG 6 cut(s) 280, 326, 368, 842, 1000, 1118
BtsIMutI CAGTG 2 cut(s) 330, 723
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 482, 793
CseI GACGC 2 cut(s) 130, 829
Csp6I GTAC 1 cut(s) 89
CviAII CATG 3 cut(s) 166, 515, 937
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 76, 807
DpnI GATC 4 cut(s) 27, 564, 584, 828
DpnII GATC 4 cut(s) 25, 562, 582, 826
DraI TTTAAA 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 793
Eco47III AGCGCT 1 cut(s) 109
Eco88I CYCGRG 2 cut(s) 175, 754
EcoRII CCWGG 1 cut(s) 371
FaeI CATG 3 cut(s) 169, 518, 940
FaqI GGGAC 1 cut(s) 806
FatI CATG 3 cut(s) 165, 514, 936
FauI CCCGC 1 cut(s) 78
FblI GTMKAC 2 cut(s) 750, 852
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 6 cut(s) 267, 313, 355, 829, 1007, 1105
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 1 cut(s) 780
GlaI GCGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 974
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 484
HapII CCGG 1 cut(s) 796
HgaI GACGC 2 cut(s) 130, 829
HhaI GCGC 1 cut(s) 110
Hin1II CATG 3 cut(s) 169, 518, 940
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 2 cut(s) 261, 751
HindII GTYRAC 2 cut(s) 261, 751
HindIII AAGCTT 2 cut(s) 265, 886
HinfI GANTC 4 cut(s) 239, 320, 752, 1017
HpaII CCGG 1 cut(s) 796
HphI GGTGA 3 cut(s) 392, 626, 811
Hpy166II GTNNAC 5 cut(s) 120, 235, 261, 751, 853
Hpy188I TCNGA 5 cut(s) 30, 65, 79, 214, 1042
Hpy188III TCNNGA 4 cut(s) 6, 592, 830, 908
Hpy8I GTNNAC 5 cut(s) 120, 235, 261, 751, 853
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 611, 1132
HpyCH4III ACNGT 2 cut(s) 334, 718
HpyCH4IV ACGT 5 cut(s) 293, 311, 478, 1044, 1113
HpyCH4V TGCA 3 cut(s) 129, 317, 1075
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 2 cut(s) 76, 807
HpySE526I ACGT 5 cut(s) 293, 311, 478, 1044, 1113
Hsp92II CATG 3 cut(s) 169, 518, 940
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 4 cut(s) 25, 562, 582, 826
LmnI GCTCC 3 cut(s) 514, 838, 1064
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 3 cut(s) 289, 847, 1127
MaeI CTAG 1 cut(s) 780
MaeII ACGT 5 cut(s) 293, 311, 478, 1044, 1113
MaeIII GTNAC 2 cut(s) 137, 388
MalI GATC 4 cut(s) 27, 564, 584, 828
MbiI CCGCTC 1 cut(s) 727
MboI GATC 4 cut(s) 25, 562, 582, 826
MflI RGATCY 1 cut(s) 582
MhlI GDGCHC 1 cut(s) 761
MlyI GAGTC 2 cut(s) 314, 746
MmeI TCCRAC 3 cut(s) 43, 499, 748
MnlI CCTC 6 cut(s) 85, 196, 376, 515, 667, 1112
MseI TTAA 4 cut(s) 396, 884, 891, 959
MspA1I CMGCKG 1 cut(s) 811
MspI CCGG 1 cut(s) 796
MspR9I CCNGG 2 cut(s) 373, 797
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 797
NdeII GATC 4 cut(s) 25, 562, 582, 826
NlaIII CATG 3 cut(s) 169, 518, 940
NlaIV GGNNCC 5 cut(s) 67, 549, 794, 840, 1066
NspI RCATGY 1 cut(s) 518
PciI ACATGT 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 1110
PfeI GAWTC 2 cut(s) 239, 1017
PflMI CCANNNNNTGG 1 cut(s) 518
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 1 cut(s) 107
PleI GAGTC 2 cut(s) 314, 746
PpsI GAGTC 2 cut(s) 314, 746
PscI ACATGT 1 cut(s) 514
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 5 cut(s) 67, 549, 794, 840, 1066
PspPI GGNCC 2 cut(s) 482, 793
PstI CTGCAG 1 cut(s) 1077
PsuI RGATCY 1 cut(s) 582
PvuII CAGCTG 1 cut(s) 811
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SalI GTCGAC 1 cut(s) 749
SaqAI TTAA 4 cut(s) 396, 884, 891, 959
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 4 cut(s) 25, 562, 582, 826
Sau96I GGNCC 2 cut(s) 482, 793
SchI GAGTC 2 cut(s) 314, 746
ScrFI CCNGG 2 cut(s) 373, 797
SduI GDGCHC 1 cut(s) 761
SfaNI GCATC 3 cut(s) 289, 847, 1127
SfcI CTRYAG 2 cut(s) 333, 1073
SinI GGWCC 1 cut(s) 793
SsiI CCGC 3 cut(s) 71, 668, 725
SspMI CTAG 1 cut(s) 780
StyD4I CCNGG 2 cut(s) 371, 795
TaaI ACNGT 2 cut(s) 334, 718
TaiI ACGT 5 cut(s) 296, 314, 481, 1047, 1116
TaqI TCGA 7 cut(s) 171, 226, 251, 323, 750, 896, 1104
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 2 cut(s) 239, 1017
Tru1I TTAA 4 cut(s) 396, 884, 891, 959
Tru9I TTAA 4 cut(s) 396, 884, 891, 959
TscAI CASTG 2 cut(s) 337, 723
TseI GCWGC 1 cut(s) 105
TspDTI ATGAA 5 cut(s) 65, 468, 708, 920, 925
TspRI CASTG 2 cut(s) 337, 723
Van91I CCANNNNNTGG 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 793
XapI RAATTY 5 cut(s) 530, 678, 695, 972, 1081
XceI RCATGY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XmiI GTMKAC 2 cut(s) 750, 852
XspI CTAG 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.