RchiOBHm_Chr3g0450541

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000230
Physical Location & Seq
Forward (+)
2032749 .. 2034017
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41787

Sequence Viewer

Length: 1269 bp
ATGTATTGCTCTGTTTTAGCAACGACCAATATCAACAACAATAATGGTGGCTTCAGCGCCCATCTTATCAGAAAGAACTCCCCAAATTCGCCATTGTACAAACACAAAAACAACAAAGTTCATCGACGGTTGATGGGTCCAAACACACCAGGATCACGAATGAAAATCGATCCGGGTAGTGGCGAACATATTATGAAGTTCTCAATGGGAACCCCACCCTTTGATATTTATGCAATTGCTGATACAGGTAGTGATCTACTATGGACACAATGCCAACCATGTAAAGCTTGCTACAAGACCAACTTTGGCGTTTTTGACCCGAGAAAATCCTCAACTTATAGGAACATTACTTGTCGTGCAAGCGACTGTAGACTCGTCGCCCTTTCCAGACCATTAGACTATCAACCAAACTTTTGTAGAGAAAATCCTAAAGGACCTTGCTTGTACAGGTATGCGTATATGGACACGTCATCCTCGACGGGTGCATTGGCTAAAGAAACAGTTACCTTGACATCCACTACTGGTAAAGTCGTAACCCTAAAAGATATTATCTTTGGGTGTGGGAATGAGAACAATTCAACTATAACTGGAACTGAAATGGGTGTTATTGGGCTTGGACGTGGGCCCTTGTCATTTGTTTCTCAAATTGCTCCCTATGTTGGAGGAAAAAGATTCTCACATTGCTTGGTGCCAGATCCCAACATTGAAAGCAAGATCTATTTTGGGAATGGGAGTGAAGTGTTGGGTGAAGGTGTGCTGACAGTACCTTTGTTCGATGAACAACCAGGCGGGAGTAACTATTATGTGACAGTACCAGGAATTACCATCGGAAATGACTTTGTTCCTTTTAACTCAACAGGGACATTGCTCACGAAGGGTAACATGTTGGTCGACTCAGGTACACCTATGACATATTTACCACAAGAATTTTTTGACCGAGTGGTAGCTCAGCTAAAAAAGACAGTTGAATTGGAATCATTCATATCTCCGGAGGATTCTACCCTTTGCTTCAACTCCACAACGGTTCCAAAATTCCCAACAGTGGCTTTACATTTTGAAGGTGGTGGCGAGCTGCCGTTGAATGAGACCCAATTATTTCAGAGAAATGAAGAGACCAAGGCATTTTGCTTTATGATGGTGAACACCACTACTGAAGATTATGGTACCTTTGGAGGTTCTCTTCAAATAGATTTCTTGATTGGTTTTGACTTGGATACAAAAGTGGTATCTTTCAAGCCAACTAATTGTGCAAACTTCAACAAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

422

Amino Acids

46.27

Weight (kDa)

6.97

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 64 - 243 9.4e-51 Xylanase inhibitor N-terminal
Asp PF00026 152 - 411 1.2e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 266 - 412 1.9e-23 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1163
AccB1I GGYRCC 2 cut(s) 688, 1163
AccI GTMKAC 2 cut(s) 370, 891
AccIII TCCGGA 1 cut(s) 988
AciI CCGC 1 cut(s) 789
AclWI GGATC 3 cut(s) 160, 164, 689
AcsI RAATTY 3 cut(s) 85, 926, 1031
AcuI CTGAAG 2 cut(s) 37, 1173
AfaI GTAC 6 cut(s) 98, 446, 765, 813, 901, 1165
AfiI CCNNNNNNNGG 3 cut(s) 179, 659, 1042
AflIII ACRYGT 2 cut(s) 465, 882
AgsI TTSAA 9 cut(s) 579, 707, 968, 1012, 1058, 1081, 1184, 1234, 1258
AjiI CACGTC 2 cut(s) 468, 620
AjnI CCWGG 3 cut(s) 148, 784, 814
AluBI AGCT 5 cut(s) 287, 947, 952, 1072, 1266
AluI AGCT 5 cut(s) 287, 947, 952, 1072, 1266
Alw26I GTCTC 2 cut(s) 1079, 1106
AlwI GGATC 3 cut(s) 160, 164, 689
Ama87I CYCGRG 1 cut(s) 319
Aor13HI TCCGGA 1 cut(s) 988
AoxI GGCC 1 cut(s) 623
ApaI GGGCCC 1 cut(s) 627
ApeKI GCWGC 1 cut(s) 1072
ApoI RAATTY 3 cut(s) 85, 926, 1031
ArsI GACNNNNNNTTYG 2 cut(s) 751, 783
Asp718I GGTACC 1 cut(s) 1163
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 4 cut(s) 137, 434, 623, 624
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 758, 1150
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 2 cut(s) 137, 434
BaeGI GKGCMC 1 cut(s) 627
BaeI ACNNNNGTAYC 2 cut(s) 1206, 1239
BanI GGYRCC 2 cut(s) 688, 1163
BanII GRGCYC 1 cut(s) 627
BbvI GCAGC 1 cut(s) 1059
BccI CCATC 4 cut(s) 69, 127, 833, 1129
BceAI ACGGC 1 cut(s) 1060
BciT130I CCWGG 3 cut(s) 150, 786, 816
BciVI GTATCC 1 cut(s) 1207
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 1079, 1106
BfmI CTRYAG 1 cut(s) 367
BfoI RGCGCY 1 cut(s) 60
BfuI GTATCC 1 cut(s) 1207
BglII AGATCT 1 cut(s) 714
BisI GCNGC 1 cut(s) 1073
BlpI GCTNAGC 1 cut(s) 948
BlsI GCNGC 1 cut(s) 1074
Bme1390I CCNGG 4 cut(s) 150, 174, 786, 816
Bme18I GGWCC 2 cut(s) 137, 434
BmeT110I CYCGRG 1 cut(s) 319
BmgBI CACGTC 2 cut(s) 468, 620
BmgT120I GGNCC 4 cut(s) 137, 434, 623, 624
BmiI GGNNCC 6 cut(s) 138, 211, 625, 690, 1026, 1165
BmrFI CCNGG 4 cut(s) 150, 174, 786, 816
Bpu1102I GCTNAGC 1 cut(s) 948
BpuMI CCSGG 1 cut(s) 174
Bsa29I ATCGAT 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 1079, 1106
BsaJI CCNNGG 1 cut(s) 1116
BsaWI WCCGGW 1 cut(s) 988
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 659, 1042
Bse1I ACTGG 2 cut(s) 526, 592
Bse3DI GCAATG 2 cut(s) 679, 863
BseAI TCCGGA 1 cut(s) 988
BseBI CCWGG 3 cut(s) 150, 786, 816
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 1116
BseGI GGATG 2 cut(s) 470, 512
BseLI CCNNNNNNNGG 3 cut(s) 179, 659, 1042
BseMI GCAATG 2 cut(s) 679, 863
BseMII CTCAG 2 cut(s) 909, 962
BseNI ACTGG 2 cut(s) 526, 592
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 1 cut(s) 1059
BshFI GGCC 1 cut(s) 625
BshNI GGYRCC 2 cut(s) 688, 1163
BshVI ATCGAT 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 2 cut(s) 173, 989
BslFI GGGAC 1 cut(s) 874
BslI CCNNNNNNNGG 3 cut(s) 179, 659, 1042
BsmAI GTCTC 2 cut(s) 1079, 1106
BsmFI GGGAC 1 cut(s) 874
BsnI GGCC 1 cut(s) 625
Bso31I GGTCTC 2 cut(s) 1079, 1106
BsoBI CYCGRG 1 cut(s) 319
Bsp120I GGGCCC 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 627
Bsp13I TCCGGA 1 cut(s) 988
Bsp1407I TGTACA 2 cut(s) 96, 444
Bsp143I GATC 5 cut(s) 152, 169, 253, 694, 714
Bsp1720I GCTNAGC 1 cut(s) 948
BspACI CCGC 1 cut(s) 789
BspANI GGCC 1 cut(s) 625
BspCNI CTCAG 2 cut(s) 908, 961
BspDI ATCGAT 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 988
BspLI GGNNCC 6 cut(s) 138, 211, 625, 690, 1026, 1165
BspPI GGATC 3 cut(s) 160, 164, 689
BspT107I GGYRCC 2 cut(s) 688, 1163
BspTNI GGTCTC 2 cut(s) 1079, 1106
BsrDI GCAATG 2 cut(s) 679, 863
BsrGI TGTACA 2 cut(s) 96, 444
BsrI ACTGG 2 cut(s) 526, 592
BssECI CCNNGG 1 cut(s) 1116
BssMI GATC 5 cut(s) 152, 169, 253, 694, 714
BssT1I CCWWGG 1 cut(s) 1116
Bst2UI CCWGG 3 cut(s) 150, 786, 816
Bst4CI ACNGT 8 cut(s) 129, 368, 502, 763, 811, 964, 1024, 1042
Bst6I CTCTTC 2 cut(s) 1104, 1185
BstAUI TGTACA 2 cut(s) 96, 444
BstC8I GCNNGC 3 cut(s) 289, 361, 1070
BstDEI CTNAG 2 cut(s) 895, 948
BstF5I GGATG 2 cut(s) 470, 512
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 5 cut(s) 155, 172, 256, 697, 717
BstMAI GTCTC 2 cut(s) 1079, 1106
BstMBI GATC 5 cut(s) 152, 169, 253, 694, 714
BstNI CCWGG 3 cut(s) 150, 786, 816
BstNSI RCATGY 1 cut(s) 886
BstSCI CCNGG 4 cut(s) 148, 172, 784, 814
BstSFI CTRYAG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 627
BstV1I GCAGC 1 cut(s) 1059
BstX2I RGATCY 2 cut(s) 694, 714
BstYI RGATCY 2 cut(s) 694, 714
Bsu15I ATCGAT 1 cut(s) 168
BsuI GTATCC 1 cut(s) 1207
BsuRI GGCC 1 cut(s) 625
BsuTUI ATCGAT 1 cut(s) 168
BtrI CACGTC 2 cut(s) 468, 620
BtsCI GGATG 2 cut(s) 470, 512
BtsIMutI CAGTG 1 cut(s) 1047
Cac8I GCNNGC 3 cut(s) 289, 361, 1070
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 4 cut(s) 137, 434, 623, 624
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 6 cut(s) 97, 445, 764, 812, 900, 1164
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviAII CATG 2 cut(s) 279, 883
CviQI GTAC 6 cut(s) 97, 445, 764, 812, 900, 1164
DdeI CTNAG 2 cut(s) 895, 948
DpnI GATC 5 cut(s) 154, 171, 255, 696, 716
DpnII GATC 5 cut(s) 152, 169, 253, 694, 714
Eam1104I CTCTTC 2 cut(s) 1104, 1185
EarI CTCTTC 2 cut(s) 1104, 1185
Eco130I CCWWGG 1 cut(s) 1116
Eco24I GRGCYC 1 cut(s) 627
Eco31I GGTCTC 2 cut(s) 1079, 1106
Eco47I GGWCC 2 cut(s) 137, 434
Eco57I CTGAAG 2 cut(s) 37, 1173
Eco88I CYCGRG 1 cut(s) 319
EcoO109I RGGNCCY 2 cut(s) 434, 624
EcoRII CCWGG 3 cut(s) 148, 784, 814
EcoT14I CCWWGG 1 cut(s) 1116
EcoT38I GRGCYC 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 1116
FaeI CATG 2 cut(s) 282, 886
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 874
FatI CATG 2 cut(s) 278, 882
FauI CCCGC 1 cut(s) 782
FblI GTMKAC 2 cut(s) 370, 891
Fnu4HI GCNGC 1 cut(s) 1073
FokI GGATG 2 cut(s) 457, 499
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 1 cut(s) 1073
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 1073
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 1 cut(s) 625
HapII CCGG 2 cut(s) 173, 989
HhaI GCGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 282, 886
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 5 cut(s) 372, 672, 893, 974, 995
HpaII CCGG 2 cut(s) 173, 989
HphI GGTGA 2 cut(s) 758, 1150
Hpy166II GTNNAC 4 cut(s) 371, 892, 902, 1141
Hpy188I TCNGA 3 cut(s) 71, 830, 1101
Hpy188III TCNNGA 5 cut(s) 156, 387, 871, 989, 1195
Hpy8I GTNNAC 4 cut(s) 371, 892, 902, 1141
Hpy99I CGWCG 3 cut(s) 129, 380, 481
HpyAV CCTTC 3 cut(s) 743, 868, 1052
HpyCH4III ACNGT 8 cut(s) 129, 368, 502, 763, 811, 964, 1024, 1042
HpyCH4IV ACGT 2 cut(s) 467, 619
HpyCH4V TGCA 4 cut(s) 233, 359, 485, 1250
HpyF3I CTNAG 2 cut(s) 895, 948
HpySE526I ACGT 2 cut(s) 467, 619
Hsp92II CATG 2 cut(s) 282, 886
HspAI GCGC 1 cut(s) 57
Kpn2I TCCGGA 1 cut(s) 988
KpnI GGTACC 1 cut(s) 1167
Kzo9I GATC 5 cut(s) 152, 169, 253, 694, 714
LmnI GCTCC 1 cut(s) 655
Lsp1109I GCAGC 1 cut(s) 1059
MaeII ACGT 2 cut(s) 467, 619
MaeIII GTNAC 5 cut(s) 502, 532, 794, 805, 878
MalI GATC 5 cut(s) 154, 171, 255, 696, 716
MboI GATC 5 cut(s) 152, 169, 253, 694, 714
MboII GAAGA 3 cut(s) 1121, 1166, 1172
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 2 cut(s) 694, 714
MhlI GDGCHC 1 cut(s) 627
MlyI GAGTC 2 cut(s) 366, 887
MmeI TCCRAC 1 cut(s) 640
MnlI CCTC 5 cut(s) 340, 484, 656, 985, 1166
MroI TCCGGA 1 cut(s) 988
MseI TTAA 1 cut(s) 849
MspI CCGG 2 cut(s) 173, 989
MspR9I CCNGG 4 cut(s) 150, 174, 786, 816
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 3 cut(s) 150, 786, 816
NciI CCSGG 1 cut(s) 174
NdeII GATC 5 cut(s) 152, 169, 253, 694, 714
NlaIII CATG 2 cut(s) 282, 886
NlaIV GGNNCC 6 cut(s) 138, 211, 625, 690, 1026, 1165
NmuCI GTSAC 1 cut(s) 805
NspI RCATGY 1 cut(s) 886
PciI ACATGT 1 cut(s) 882
PcsI WCGNNNNNNNCGW 1 cut(s) 473
PfeI GAWTC 3 cut(s) 672, 974, 995
PkrI GCNGC 1 cut(s) 1074
PleI GAGTC 2 cut(s) 366, 887
PpsI GAGTC 2 cut(s) 366, 887
PpuMI RGGWCCY 1 cut(s) 434
PscI ACATGT 1 cut(s) 882
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 3 cut(s) 148, 784, 814
PspGI CCWGG 3 cut(s) 148, 784, 814
PspN4I GGNNCC 6 cut(s) 138, 211, 625, 690, 1026, 1165
PspOMI GGGCCC 1 cut(s) 623
PspPI GGNCC 4 cut(s) 137, 434, 623, 624
PspPPI RGGWCCY 1 cut(s) 434
PsuI RGATCY 2 cut(s) 694, 714
RsaI GTAC 6 cut(s) 98, 446, 765, 813, 901, 1165
RsaNI GTAC 6 cut(s) 97, 445, 764, 812, 900, 1164
SalI GTCGAC 1 cut(s) 890
SaqAI TTAA 1 cut(s) 849
SatI GCNGC 1 cut(s) 1073
Sau3AI GATC 5 cut(s) 152, 169, 253, 694, 714
Sau96I GGNCC 4 cut(s) 137, 434, 623, 624
SchI GAGTC 2 cut(s) 366, 887
ScrFI CCNGG 4 cut(s) 150, 174, 786, 816
SduI GDGCHC 1 cut(s) 627
SfcI CTRYAG 1 cut(s) 367
SinI GGWCC 2 cut(s) 137, 434
SsiI CCGC 1 cut(s) 789
StyD4I CCNGG 4 cut(s) 148, 172, 784, 814
StyI CCWWGG 1 cut(s) 1116
TaaI ACNGT 8 cut(s) 129, 368, 502, 763, 811, 964, 1024, 1042
TaiI ACGT 2 cut(s) 470, 622
TaqI TCGA 5 cut(s) 124, 168, 476, 774, 891
TaqII GACCGA 1 cut(s) 951
TatI WGTACW 2 cut(s) 96, 444
TfiI GAWTC 3 cut(s) 672, 974, 995
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 1 cut(s) 1047
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 1 cut(s) 1072
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 6 cut(s) 110, 176, 209, 792, 970, 1122
TspRI CASTG 1 cut(s) 1047
VpaK11BI GGWCC 2 cut(s) 137, 434
XapI RAATTY 3 cut(s) 85, 926, 1031
XceI RCATGY 1 cut(s) 886
XmiI GTMKAC 2 cut(s) 370, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.