RLG00000023682

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000230
Physical Location & Seq
Reverse (-)
27106377 .. 27107027
651 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023682

Sequence Viewer

Length: 651 bp
ATGGGAGTGATTTGGCTTGGAACTGGGCCTGTGTCATTTGTTTCTCAAATTGCTCCCCATGTTGGAGGGAACGGATTTTCTCATTGCTTGGTGCCTTTAGACAGTGATGCCAAAATTGAAAGCAAGATCAATTTCGAAAATGGGAGTCAAGTTCCGGGTGAAGGGGTTGTCTCATCACCATTGGTTAATATAAGTGTAGCCCCATCTAACTATTTTGTAACGGTAGAAGGAGTTACCATTGGAAATGAATTTGTTCCGTTCAACTCAACAGTGACACAGCTTAATAAACTTAACATGATGGTCGACTCGGGCCCAACTTTTGCACAAGTACCTCAAGATATTTTTGATCGGATGGTAACTCAGCTGAAGAAGACGCTTGATCCGAAATTGGAGTCATTTATTTTTAATGACACGGAACATAATTCTAGTTTTTTGTGTCTCAACTCGACGACAATTCCAGAAGAACCAAAAGTGACTTTTCATTTCGAGGGTGGTGGCAAACTTCAGTTAATGGCGGAACAATTATTCAAAATAAACGAGAATAGAGTCTGCTTTGGATTCGTGCTCCACCCTGGGCAACACATGCCTTTCGGTATTTTTGGAGCCATTTTGCAGCGAAATTTGTTGGTTGGTTTTGACCGGGATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

217

Amino Acids

23.66

Weight (kDa)

5.13

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 63 - 215 1e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 70 - 214 5.9e-18 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 303
AciI CCGC 1 cut(s) 515
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 2 cut(s) 248, 619
AcuI CTGAAG 2 cut(s) 386, 488
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 2 cut(s) 62, 161
AgsI TTSAA 3 cut(s) 119, 262, 529
AjnI CCWGG 1 cut(s) 571
AluBI AGCT 2 cut(s) 280, 364
AluI AGCT 2 cut(s) 280, 364
Alw21I GWGCWC 1 cut(s) 567
Alw26I GTCTC 2 cut(s) 175, 443
AlwI GGATC 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 2 cut(s) 26, 310
ApaI GGGCCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 613
ApoI RAATTY 2 cut(s) 248, 619
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 3 cut(s) 26, 310, 311
AsuC2I CCSGG 2 cut(s) 156, 641
AsuHPI GGTGA 2 cut(s) 168, 170
AsuII TTCGAA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 314
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 567
BbvI GCAGC 1 cut(s) 625
BccI CCATC 3 cut(s) 211, 292, 346
BciT130I CCWGG 1 cut(s) 573
BcnI CCSGG 2 cut(s) 156, 641
BcoDI GTCTC 2 cut(s) 175, 443
BfaI CTAG 1 cut(s) 426
BisI GCNGC 1 cut(s) 614
BlsI GCNGC 1 cut(s) 615
Bme1390I CCNGG 3 cut(s) 156, 573, 641
BmeT110I CYCGRG 1 cut(s) 307
BmgT120I GGNCC 3 cut(s) 26, 310, 311
BmiI GGNNCC 3 cut(s) 93, 312, 604
BmrFI CCNGG 3 cut(s) 156, 573, 641
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 97
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 318
BpuMI CCSGG 2 cut(s) 156, 641
BsaJI CCNNGG 2 cut(s) 571, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 161
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 2 cut(s) 571, 572
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 62, 161
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 1 cut(s) 625
BshFI GGCC 2 cut(s) 28, 312
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 567
BsiHKCI CYCGRG 1 cut(s) 307
BsiSI CCGG 2 cut(s) 155, 640
BslI CCNNNNNNNGG 2 cut(s) 62, 161
BsmAI GTCTC 2 cut(s) 175, 443
BsnI GGCC 2 cut(s) 28, 312
BsoBI CYCGRG 1 cut(s) 307
Bsp119I TTCGAA 1 cut(s) 135
Bsp120I GGGCCC 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 314, 567
Bsp143I GATC 3 cut(s) 126, 346, 379
BspACI CCGC 1 cut(s) 515
BspANI GGCC 2 cut(s) 28, 312
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 3 cut(s) 93, 312, 604
BspPI GGATC 1 cut(s) 374
BspT104I TTCGAA 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 82
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 571, 572
BssMI GATC 3 cut(s) 126, 346, 379
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 3 cut(s) 104, 223, 271
BstAPI GCANNNNNTGC 1 cut(s) 583
BstBI TTCGAA 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 3 cut(s) 129, 349, 382
BstMAI GTCTC 2 cut(s) 175, 443
BstMBI GATC 3 cut(s) 126, 346, 379
BstMWI GCNNNNNNNGC 1 cut(s) 583
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 3 cut(s) 154, 571, 639
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 625
BstV2I GAAGAC 1 cut(s) 377
BsuRI GGCC 2 cut(s) 28, 312
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 109, 276
Cfr13I GGNCC 3 cut(s) 26, 310, 311
CseI GACGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 329
CviAII CATG 3 cut(s) 59, 295, 583
CviJI RGCY 7 cut(s) 16, 28, 200, 280, 312, 364, 605
CviKI_1 RGCY 7 cut(s) 16, 28, 200, 280, 312, 364, 605
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 128, 348, 381
DpnII GATC 3 cut(s) 126, 346, 379
EciI GGCGGA 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 314
Eco57I CTGAAG 2 cut(s) 386, 488
Eco88I CYCGRG 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 314
FaeI CATG 3 cut(s) 62, 298, 586
FaiI YATR 7 cut(s) 60, 191, 296, 420, 584, 647, 649
FatI CATG 3 cut(s) 58, 294, 582
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 614
FokI GGATG 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 614
FspBI CTAG 1 cut(s) 426
GluI GCNGC 1 cut(s) 614
HaeIII GGCC 2 cut(s) 28, 312
HapII CCGG 2 cut(s) 155, 640
HgaI GACGC 1 cut(s) 382
Hin1II CATG 3 cut(s) 62, 298, 586
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 5 cut(s) 145, 305, 392, 546, 558
HpaII CCGG 2 cut(s) 155, 640
HphI GGTGA 2 cut(s) 168, 170
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 351, 384
Hpy188III TCNNGA 2 cut(s) 335, 458
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 155, 221
HpyCH4III ACNGT 3 cut(s) 104, 223, 271
HpyCH4V TGCA 2 cut(s) 323, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 583
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 3 cut(s) 62, 298, 586
Kzo9I GATC 3 cut(s) 126, 346, 379
LmnI GCTCC 3 cut(s) 58, 570, 602
LpnPI CCDG 6 cut(s) 9, 42, 168, 471, 558, 585
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 5 cut(s) 217, 232, 271, 355, 472
MalI GATC 3 cut(s) 128, 348, 381
MboI GATC 3 cut(s) 126, 346, 379
MboII GAAGA 3 cut(s) 379, 382, 473
MhlI GDGCHC 2 cut(s) 314, 567
MluCI AATT 9 cut(s) 48, 114, 130, 248, 386, 421, 453, 521, 619
MlyI GAGTC 4 cut(s) 154, 299, 401, 555
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 3 cut(s) 59, 342, 481
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 5 cut(s) 186, 282, 291, 405, 509
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 2 cut(s) 155, 640
MspR9I CCNGG 3 cut(s) 156, 573, 641
MvaI CCWGG 1 cut(s) 573
MwoI GCNNNNNNNGC 1 cut(s) 583
NciI CCSGG 2 cut(s) 156, 641
NdeII GATC 3 cut(s) 126, 346, 379
NlaIII CATG 3 cut(s) 62, 298, 586
NlaIV GGNNCC 3 cut(s) 93, 312, 604
NmuCI GTSAC 2 cut(s) 271, 472
NspI RCATGY 1 cut(s) 586
NspV TTCGAA 1 cut(s) 135
PasI CCCWGGG 1 cut(s) 572
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 558
PkrI GCNGC 1 cut(s) 615
PleI GAGTC 4 cut(s) 153, 299, 400, 554
PpsI GAGTC 4 cut(s) 153, 299, 400, 554
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 3 cut(s) 93, 312, 604
PspOMI GGGCCC 1 cut(s) 310
PspPI GGNCC 3 cut(s) 26, 310, 311
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 5 cut(s) 186, 282, 291, 405, 509
SatI GCNGC 1 cut(s) 614
Sau3AI GATC 3 cut(s) 126, 346, 379
Sau96I GGNCC 3 cut(s) 26, 310, 311
SchI GAGTC 4 cut(s) 154, 299, 401, 555
ScrFI CCNGG 3 cut(s) 156, 573, 641
SduI GDGCHC 2 cut(s) 314, 567
SetI ASST 3 cut(s) 282, 334, 366
SfaNI GCATC 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 9 cut(s) 48, 114, 130, 248, 386, 421, 453, 521, 619
SsiI CCGC 1 cut(s) 515
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 154, 571, 639
TaaI ACNGT 3 cut(s) 104, 223, 271
TaqI TCGA 4 cut(s) 135, 303, 446, 486
TasI AATT 9 cut(s) 48, 114, 130, 248, 386, 421, 453, 521, 619
TfiI GAWTC 1 cut(s) 558
Tru1I TTAA 5 cut(s) 186, 282, 291, 405, 509
Tru9I TTAA 5 cut(s) 186, 282, 291, 405, 509
TscAI CASTG 2 cut(s) 109, 276
TseFI GTSAC 2 cut(s) 271, 472
TseI GCWGC 1 cut(s) 613
Tsp45I GTSAC 2 cut(s) 271, 472
TspDTI ATGAA 2 cut(s) 261, 470
TspGWI ACGGA 3 cut(s) 87, 246, 428
TspRI CASTG 2 cut(s) 109, 276
XapI RAATTY 2 cut(s) 248, 619
XceI RCATGY 1 cut(s) 586
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.