Rroxscaffold_1G00021590

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000230
Physical Location & Seq
Reverse (-)
26499694 .. 26507793
8100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021590.1

Sequence Viewer

Length: 507 bp
ATGGTCTTTGGCTCCACACTAGGAAGCACTGCAAATGTGCTCTTGCGCTCATTTGCCTCTACTCAAGATGAATTTGGCAATGGTAGTGAGGTTAAGGGTGAAGGTGTGGTTTCAACTTCCTTGGTGTTCAAAGAAGGCAAGACCCCATGTTTTGTTACAATGGGAGGAATTAGTGTTGGAGATAAGTTTGTGGCTTTTAGCTCTTCAGGGAAAGTTTCAAAGGGCAACATGTTTGTAAACTTAGGAACCCCGGAAATGCTTCTACCGCAAGATTTCTATGACAGATTGGTAGCTGCAGGGAGGGAGCAGATTCCAATGGCACACATTGAAGATGACCCAACTTTGGAAACTCAGCTTTGCTACAAAAGCAATGCTAATCGTGGAGGGCCAATATTGATAGTACATTTTAAATGTGGAGAGACTATTCAGCGCACCGACTTGTATTTGCACAACGGGAATGGAACATTAAAAACATTTTTTGGTTACTTAAAAAAATATTGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

168

Amino Acids

18.24

Weight (kDa)

6.82

Isoelectric Point (pI)

21.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 266
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 343
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 4 cut(s) 114, 130, 219, 329
AluBI AGCT 3 cut(s) 201, 293, 355
AluI AGCT 3 cut(s) 201, 293, 355
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 413
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 2 cut(s) 48, 432
AspS9I GGNCC 1 cut(s) 386
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 280
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 2 cut(s) 13, 247
BmrFI CCNGG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 120, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse3DI GCAATG 2 cut(s) 85, 376
BseDI CCNNGG 2 cut(s) 120, 249
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 2 cut(s) 85, 376
BseMII CTCAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 413
BsnI GGCC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 42
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 13, 247
BspMAI CTGCAG 1 cut(s) 298
BspQI GCTCTTC 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 85, 376
BssECI CCNNGG 2 cut(s) 120, 249
BssT1I CCWWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 241, 351
BstHHI GCGC 2 cut(s) 48, 432
BstMAI GTCTC 1 cut(s) 413
BstMWI GCNNNNNNNGC 2 cut(s) 265, 366
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
CfoI GCGC 2 cut(s) 48, 432
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 1 cut(s) 401
CviAII CATG 2 cut(s) 147, 229
CviJI RGCY 6 cut(s) 12, 194, 201, 293, 355, 388
CviKI_1 RGCY 6 cut(s) 12, 194, 201, 293, 355, 388
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 2 cut(s) 241, 351
DraI TTTAAA 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 150, 232
FaiI YATR 4 cut(s) 148, 230, 279, 505
FatI CATG 2 cut(s) 146, 228
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 47, 431
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 1 cut(s) 388
HapII CCGG 1 cut(s) 251
HhaI GCGC 2 cut(s) 48, 432
Hin1II CATG 2 cut(s) 150, 232
Hin6I GCGC 2 cut(s) 46, 430
HinP1I GCGC 2 cut(s) 46, 430
HinfI GANTC 1 cut(s) 310
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 95, 128
HpyCH4V TGCA 3 cut(s) 32, 296, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 366
HpyF3I CTNAG 2 cut(s) 241, 351
Hsp92II CATG 2 cut(s) 150, 232
HspAI GCGC 2 cut(s) 46, 430
LguI GCTCTTC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 17, 304
LpnPI CCDG 3 cut(s) 192, 264, 282
Lsp1109I GCAGC 1 cut(s) 280
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 154, 482
MboII GAAGA 2 cut(s) 195, 341
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 2 cut(s) 71, 168
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 5 cut(s) 67, 82, 158, 294, 377
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 4 cut(s) 93, 408, 467, 488
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 265, 366
NciI CCSGG 1 cut(s) 251
NlaIII CATG 2 cut(s) 150, 232
NlaIV GGNNCC 2 cut(s) 13, 247
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 1 cut(s) 295
PscI ACATGT 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 13, 247
PspPI GGNCC 1 cut(s) 386
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 208
SaqAI TTAA 4 cut(s) 93, 408, 467, 488
SatI GCNGC 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 93, 106, 203, 295, 357
SfcI CTRYAG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 2 cut(s) 71, 168
SsiI CCGC 1 cut(s) 266
SspI AATATT 2 cut(s) 393, 497
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 120
TasI AATT 2 cut(s) 71, 168
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 4 cut(s) 93, 408, 467, 488
Tru9I TTAA 4 cut(s) 93, 408, 467, 488
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 71
XceI RCATGY 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.