Rh3CG038400

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000230
Physical Location & Seq
Forward (+)
2582498 .. 2583608
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG038400.1

Sequence Viewer

Length: 1041 bp
ATGTTGGGATACCCACTACAAACCGATCCGATTAGTGGTATGCATATTTTGAAGTTATCAGTCGGAACCCCGCCCTCAGATATTTATGTAGTTGCTGATACAGGCAGCGATCTACTGTGGACGCAATGCAAGCCGTGTAACACTTGCTACAACACCAACCATACCATGTTCGACCCGAGAAAATCCTCAACTTATAGGAACATTACTTGTTCTGAAAAAGAGTGTAGATTTGTCGACGATTCCAAACCATCGAGCCAGTCACCAAGCTTTTGTAGAAAGCATCCTACAAGAATGTGTGCTTACAATATGACGTATGCAGACTCGACATCCACTATAGGCGTTTTGGCAAAAGAAACAGTTACCTTGACATCCAGGACAGGTGAGGTTGTAACCCTCGAAGATATTGTCTTTGGGTGTGGGCATTTGAACCATGAACATGTTTCAACTGGAAATGAAATGGGAATAATTGGGCTTGGACGTGGGCCTTTTGATCCCAAGTTTGAAAGCAAGATCCATTTCGGGAATGGGAGTGAAGTTTTGGGTGAAGGGGTTGTCTCAACACCATTGCCTGATGACAAGTATGGCTATACGGTGGTGGTAGAGGGAATTTCCATTGGTAATGAATTTGTTTCGTTCAACTCAACAGTGAAACCGCTCAAAAAGTTTAAGATGGTTGTCGACTCGGGCGCAAGTATTGGACATCTGAATAAGACGCTTGATCCAGAATTGGAGCCATCCATTGTATACGATGCCACGCAAGACAAAACACATTATTTAAGCTTTAACTCGATGACAATTCCAGACGAACCAAAAGTGGCATTTCATTTCATGGGTGGTGGCAAACTGGAGTTAATGGCTGAACAAATTTTCATCAAATCTCCACAGGATGAGAAAAAAGTCTTCTTTGGAATCGGCTCTATGGATATTTTTTCTGAAGTGAATTTTGGTGTTTTTGGAGCCAATCTGCAGGGAAATTTGTTGATTGGTTATGACCTCGATAGAAATGTGGCATCCTTCAAGCCAACTAATTGCCTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

346

Amino Acids

37.98

Weight (kDa)

5.47

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 17 - 162 7.3e-40 Xylanase inhibitor N-terminal
Asp PF00026 18 - 67 1.5e-08 Eukaryotic aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 655
AccI GTMKAC 3 cut(s) 234, 678, 744
AciI CCGC 2 cut(s) 71, 653
AclWI GGATC 4 cut(s) 20, 485, 505, 713
AcsI RAATTY 5 cut(s) 606, 623, 864, 940, 973
AcuI CTGAAG 1 cut(s) 954
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 6 cut(s) 52, 427, 444, 503, 637, 1018
AjiI CACGTC 1 cut(s) 479
AjnI CCWGG 1 cut(s) 371
AjuI GAANNNNNNNTTGG 2 cut(s) 927, 959
AluBI AGCT 2 cut(s) 267, 780
AluI AGCT 2 cut(s) 267, 780
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 4 cut(s) 20, 485, 505, 713
Ama87I CYCGRG 2 cut(s) 175, 682
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 5 cut(s) 606, 623, 864, 940, 973
ArsI GACNNNNNNTTYG 2 cut(s) 390, 422
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 3 cut(s) 252, 392, 554
AvaI CYCGRG 2 cut(s) 175, 682
BbsI GAAGAC 1 cut(s) 892
BbvI GCAGC 1 cut(s) 117
BccI CCATC 3 cut(s) 256, 664, 742
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 559
BfmI CTRYAG 2 cut(s) 333, 965
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 373
BmeT110I CYCGRG 2 cut(s) 175, 682
BmgBI CACGTC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 3 cut(s) 67, 732, 958
BmrFI CCNGG 1 cut(s) 373
BmsI GCATC 3 cut(s) 289, 739, 1019
BpiI GAAGAC 1 cut(s) 892
BpmI CTGGAG 1 cut(s) 866
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 3 cut(s) 256, 451, 849
Bse3DI GCAATG 2 cut(s) 131, 563
BseBI CCWGG 1 cut(s) 373
BseGI GGATG 6 cut(s) 280, 326, 368, 734, 892, 1010
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 2 cut(s) 131, 563
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 3 cut(s) 256, 451, 849
BseXI GCAGC 1 cut(s) 117
BshFI GGCC 1 cut(s) 484
BsiHKCI CYCGRG 2 cut(s) 175, 682
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 559
BsnI GGCC 1 cut(s) 484
BsoBI CYCGRG 2 cut(s) 175, 682
Bsp143I GATC 5 cut(s) 25, 109, 490, 510, 718
BspACI CCGC 2 cut(s) 71, 653
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 67, 732, 958
BspMAI CTGCAG 1 cut(s) 969
BspPI GGATC 4 cut(s) 20, 485, 505, 713
BsrBI CCGCTC 1 cut(s) 655
BsrDI GCAATG 2 cut(s) 131, 563
BsrI ACTGG 3 cut(s) 256, 451, 849
BssMI GATC 5 cut(s) 25, 109, 490, 510, 718
BssNAI GTATAC 1 cut(s) 745
Bst1107I GTATAC 1 cut(s) 745
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 4 cut(s) 117, 358, 592, 646
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 6 cut(s) 280, 326, 368, 734, 892, 1010
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 5 cut(s) 28, 112, 493, 513, 721
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 5 cut(s) 25, 109, 490, 510, 718
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 371
BstSFI CTRYAG 2 cut(s) 333, 965
BstV1I GCAGC 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 892
BstX2I RGATCY 1 cut(s) 510
BstYI RGATCY 1 cut(s) 510
BstZ17I GTATAC 1 cut(s) 745
BsuRI GGCC 1 cut(s) 484
BtrI CACGTC 1 cut(s) 479
BtsCI GGATG 6 cut(s) 280, 326, 368, 734, 892, 1010
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 482
CseI GACGC 2 cut(s) 130, 721
CviAII CATG 4 cut(s) 166, 431, 437, 829
DdeI CTNAG 1 cut(s) 76
DpnI GATC 5 cut(s) 27, 111, 492, 512, 720
DpnII GATC 5 cut(s) 25, 109, 490, 510, 718
Eco57I CTGAAG 1 cut(s) 954
Eco88I CYCGRG 2 cut(s) 175, 682
EcoRII CCWGG 1 cut(s) 371
EcoT22I ATGCAT 1 cut(s) 45
FaeI CATG 4 cut(s) 169, 434, 440, 832
FatI CATG 4 cut(s) 165, 430, 436, 828
FauI CCCGC 1 cut(s) 78
FblI GTMKAC 3 cut(s) 234, 678, 744
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 6 cut(s) 267, 313, 355, 721, 899, 997
Fsp4HI GCNGC 1 cut(s) 106
GlaI GCGC 1 cut(s) 688
GluI GCNGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 1 cut(s) 484
HgaI GACGC 2 cut(s) 130, 721
HhaI GCGC 1 cut(s) 689
Hin1II CATG 4 cut(s) 169, 434, 440, 832
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HincII GTYRAC 2 cut(s) 235, 679
HindII GTYRAC 2 cut(s) 235, 679
HindIII AAGCTT 2 cut(s) 265, 778
HinfI GANTC 4 cut(s) 239, 320, 680, 909
HphI GGTGA 3 cut(s) 252, 392, 554
Hpy166II GTNNAC 4 cut(s) 120, 235, 679, 745
Hpy188I TCNGA 6 cut(s) 30, 65, 79, 214, 705, 934
Hpy188III TCNNGA 3 cut(s) 520, 722, 800
Hpy8I GTNNAC 4 cut(s) 120, 235, 679, 745
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 539, 1024
HpyCH4III ACNGT 4 cut(s) 117, 358, 592, 646
HpyCH4IV ACGT 2 cut(s) 311, 478
HpyCH4V TGCA 4 cut(s) 43, 129, 317, 967
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 76
HpySE526I ACGT 2 cut(s) 311, 478
Hsp92II CATG 4 cut(s) 169, 434, 440, 832
HspAI GCGC 1 cut(s) 687
Kzo9I GATC 5 cut(s) 25, 109, 490, 510, 718
LmnI GCTCC 2 cut(s) 730, 956
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 3 cut(s) 289, 739, 1019
MaeII ACGT 2 cut(s) 311, 478
MaeIII GTNAC 4 cut(s) 137, 258, 358, 388
MalI GATC 5 cut(s) 27, 111, 492, 512, 720
MbiI CCGCTC 1 cut(s) 655
MboI GATC 5 cut(s) 25, 109, 490, 510, 718
MboII GAAGA 2 cut(s) 410, 892
MflI RGATCY 1 cut(s) 510
MluCI AATT 9 cut(s) 465, 606, 623, 725, 795, 864, 940, 973, 1027
MlyI GAGTC 2 cut(s) 314, 674
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 6 cut(s) 85, 196, 376, 404, 595, 1004
Mph1103I ATGCAT 1 cut(s) 45
MseI TTAA 4 cut(s) 666, 776, 783, 851
MslI CAYNNNNRTG 1 cut(s) 435
MspR9I CCNGG 1 cut(s) 373
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 5 cut(s) 25, 109, 490, 510, 718
NlaIII CATG 4 cut(s) 169, 434, 440, 832
NlaIV GGNNCC 3 cut(s) 67, 732, 958
NmuCI GTSAC 1 cut(s) 258
NsiI ATGCAT 1 cut(s) 45
NspI RCATGY 1 cut(s) 440
PciI ACATGT 1 cut(s) 436
PfeI GAWTC 2 cut(s) 239, 909
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 1 cut(s) 107
PleI GAGTC 2 cut(s) 314, 674
PpsI GAGTC 2 cut(s) 314, 674
PscI ACATGT 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 3 cut(s) 67, 732, 958
PspPI GGNCC 1 cut(s) 482
PstI CTGCAG 1 cut(s) 969
PsuI RGATCY 1 cut(s) 510
RseI CAYNNNNRTG 1 cut(s) 435
SalI GTCGAC 2 cut(s) 233, 677
SaqAI TTAA 4 cut(s) 666, 776, 783, 851
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 5 cut(s) 25, 109, 490, 510, 718
Sau96I GGNCC 1 cut(s) 482
SchI GAGTC 2 cut(s) 314, 674
ScrFI CCNGG 1 cut(s) 373
SetI ASST 8 cut(s) 269, 314, 365, 382, 387, 481, 782, 996
SfaNI GCATC 3 cut(s) 289, 739, 1019
SfcI CTRYAG 2 cut(s) 333, 965
SmiMI CAYNNNNRTG 1 cut(s) 435
Sse9I AATT 9 cut(s) 465, 606, 623, 725, 795, 864, 940, 973, 1027
SsiI CCGC 2 cut(s) 71, 653
StyD4I CCNGG 1 cut(s) 371
TaaI ACNGT 4 cut(s) 117, 358, 592, 646
TaiI ACGT 2 cut(s) 314, 481
TaqI TCGA 8 cut(s) 171, 234, 251, 323, 396, 678, 788, 996
TasI AATT 9 cut(s) 465, 606, 623, 725, 795, 864, 940, 973, 1027
TfiI GAWTC 2 cut(s) 239, 909
Tru1I TTAA 4 cut(s) 666, 776, 783, 851
Tru9I TTAA 4 cut(s) 666, 776, 783, 851
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 6 cut(s) 447, 468, 636, 812, 817, 859
TspRI CASTG 1 cut(s) 651
XapI RAATTY 5 cut(s) 606, 623, 864, 940, 973
XceI RCATGY 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
XmiI GTMKAC 3 cut(s) 234, 678, 744
Zsp2I ATGCAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.