Rh6BG000600

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000230
Physical Location & Seq
Forward (+)
104818 .. 106065
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG000600.1

Sequence Viewer

Length: 786 bp
ATGAACCCAGGAAATGAGGCTTTACCCAATAAAACAACTGCAACCACCAATATCAACAACAATAATGGTGGCTTTAGCACCCATCTTATCAGAAGGAACTCCCCAAATTCACCATTGTACAAACACAAAAACAACAAAGTTTCTCAACGGTTGATGGGTCCAGACACGCCGGGATCACCAATGAAAACCGATCCAAAAAGTGGCGAACATATTATGAAGTTCTCAATGGGAACCCCGCCCTTTGATATTTATGCAATTGCTAATATAGGCAGCGATCTACTATGGACGCAATTCCAACCGTGTAAAGCTTGTTACAAGACCAACTTTGACCTTTTTGATCCGTTTAAATCCTCAACTTATAGGAATATTACTTGTCGTGCAAAGGATTGTAGACTAGTCGCCAATCTCAGACCACCGGATTATCCACTAAACTTTTGTAAAGAAAATCCTAAAGGACCTTGCTTGTACGGGTATTTGGACAAGTCTTCCTTGACCAGTGAATTGGCTAAAGAAATAGTTACCTTGACATCCACTACAGGTAGAGTTGTAACCCTAAAAGATATTGTGGTTGGGTGTGGGCATGAGAAATTGAGAACTATGAAGTTGGTTCAACTGGAAATGAAATGGGAGTTATTGGGCTTGGACGTGGGCCCTTGTCATTTGTTTCACAAATTGCTCCCTATGTTGGAGGCAAAAGATTCTCTCATTGCTTGGTGCCATATCCCGAAATCGAAAGCAAGATATATTTCTGCAACGGGAGTGAAGTTTTGGGTGAAGGGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

261

Amino Acids

29.23

Weight (kDa)

9.35

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 71 - 199 1.1e-23 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 714
AccB7I CCANNNNNTGG 1 cut(s) 200
AccI GTMKAC 1 cut(s) 391
AciI CCGC 1 cut(s) 236
AclWI GGATC 3 cut(s) 181, 185, 332
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 2 cut(s) 119, 467
AfiI CCNNNNNNNGG 2 cut(s) 200, 685
AgsI TTSAA 1 cut(s) 611
AhlI ACTAGT 1 cut(s) 394
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
AlwI GGATC 3 cut(s) 181, 185, 332
AoxI GGCC 1 cut(s) 649
ApaI GGGCCC 1 cut(s) 653
ApeKI GCWGC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 106
AspS9I GGNCC 4 cut(s) 158, 455, 649, 650
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 3 cut(s) 102, 168, 784
AvaII GGWCC 2 cut(s) 158, 455
BaeGI GKGCMC 1 cut(s) 653
BanI GGYRCC 1 cut(s) 714
BanII GRGCYC 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 90, 148
BciT130I CCWGG 1 cut(s) 9
BcnI CCSGG 1 cut(s) 171
BcuI ACTAGT 1 cut(s) 394
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 534
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme1390I CCNGG 2 cut(s) 9, 171
Bme18I GGWCC 2 cut(s) 158, 455
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 4 cut(s) 158, 455, 649, 650
BmiI GGNNCC 4 cut(s) 159, 232, 651, 716
BmrFI CCNGG 2 cut(s) 9, 171
BpiI GAAGAC 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 685
Bse1I ACTGG 2 cut(s) 495, 618
Bse3DI GCAATG 1 cut(s) 705
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 527
BseLI CCNNNNNNNGG 2 cut(s) 200, 685
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 1 cut(s) 421
BseNI ACTGG 2 cut(s) 495, 618
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 651
BshNI GGYRCC 1 cut(s) 714
BsiSI CCGG 2 cut(s) 170, 416
BslI CCNNNNNNNGG 2 cut(s) 200, 685
BsnI GGCC 1 cut(s) 651
Bsp120I GGGCCC 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 653
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 4 cut(s) 173, 190, 274, 337
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 651
BspCNI CTCAG 1 cut(s) 420
BspLI GGNNCC 4 cut(s) 159, 232, 651, 716
BspPI GGATC 3 cut(s) 181, 185, 332
BspT107I GGYRCC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 705
BsrGI TGTACA 1 cut(s) 117
BsrI ACTGG 2 cut(s) 495, 618
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 4 cut(s) 173, 190, 274, 337
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 150, 300
BstAUI TGTACA 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 407
BstF5I GGATG 1 cut(s) 527
BstKTI GATC 4 cut(s) 176, 193, 277, 340
BstMBI GATC 4 cut(s) 173, 190, 274, 337
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 2 cut(s) 7, 169
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 477
BstXI CCANNNNNNTGG 1 cut(s) 502
BsuRI GGCC 1 cut(s) 651
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 1 cut(s) 527
BtsIMutI CAGTG 1 cut(s) 502
Cfr13I GGNCC 4 cut(s) 158, 455, 649, 650
CseI GACGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 118, 466
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 1 cut(s) 581
CviJI RGCY 6 cut(s) 20, 72, 308, 506, 639, 651
CviKI_1 RGCY 6 cut(s) 20, 72, 308, 506, 639, 651
CviQI GTAC 2 cut(s) 118, 466
DdeI CTNAG 1 cut(s) 407
DpnI GATC 4 cut(s) 175, 192, 276, 339
DpnII GATC 4 cut(s) 173, 190, 274, 337
DraI TTTAAA 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 653
Eco47I GGWCC 2 cut(s) 158, 455
EcoO109I RGGNCCY 2 cut(s) 455, 650
EcoRII CCWGG 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 653
FaeI CATG 1 cut(s) 584
FalI AAGNNNNNCTT 4 cut(s) 308, 340, 473, 505
FatI CATG 1 cut(s) 580
FauI CCCGC 1 cut(s) 243
FblI GTMKAC 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 1 cut(s) 514
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 1 cut(s) 395
GluI GCNGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 651
HapII CCGG 2 cut(s) 170, 416
HgaI GACGC 1 cut(s) 295
Hin1II CATG 1 cut(s) 584
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 1 cut(s) 698
HpaII CCGG 2 cut(s) 170, 416
HphI GGTGA 3 cut(s) 102, 168, 784
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 2 cut(s) 92, 410
Hpy188III TCNNGA 2 cut(s) 161, 724
Hpy8I GTNNAC 1 cut(s) 392
HpyAV CCTTC 2 cut(s) 87, 769
HpyCH4III ACNGT 2 cut(s) 150, 300
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 4 cut(s) 41, 254, 380, 752
HpyF3I CTNAG 1 cut(s) 407
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 1 cut(s) 584
Kzo9I GATC 4 cut(s) 173, 190, 274, 337
LmnI GCTCC 1 cut(s) 681
LpnPI CCDG 7 cut(s) 21, 174, 183, 429, 508, 522, 599
Lsp1109I GCAGC 1 cut(s) 282
MaeI CTAG 1 cut(s) 395
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 311, 517, 547
MalI GATC 4 cut(s) 175, 192, 276, 339
MboI GATC 4 cut(s) 173, 190, 274, 337
MboII GAAGA 1 cut(s) 477
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 653
MluCI AATT 6 cut(s) 106, 255, 290, 500, 587, 671
MmeI TCCRAC 2 cut(s) 319, 666
MnlI CCTC 3 cut(s) 10, 361, 682
MseI TTAA 1 cut(s) 345
MspI CCGG 2 cut(s) 170, 416
MspR9I CCNGG 2 cut(s) 9, 171
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 9
NciI CCSGG 1 cut(s) 171
NdeII GATC 4 cut(s) 173, 190, 274, 337
NlaIII CATG 1 cut(s) 584
NlaIV GGNNCC 4 cut(s) 159, 232, 651, 716
PfeI GAWTC 1 cut(s) 698
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 4 cut(s) 159, 232, 651, 716
PspOMI GGGCCC 1 cut(s) 649
PspPI GGNCC 4 cut(s) 158, 455, 649, 650
PspPPI RGGWCCY 1 cut(s) 455
RsaI GTAC 2 cut(s) 119, 467
RsaNI GTAC 2 cut(s) 118, 466
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 4 cut(s) 173, 190, 274, 337
Sau96I GGNCC 4 cut(s) 158, 455, 649, 650
ScrFI CCNGG 2 cut(s) 9, 171
SduI GDGCHC 1 cut(s) 653
SetI ASST 6 cut(s) 310, 333, 460, 524, 541, 648
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 158, 455
SpeI ACTAGT 1 cut(s) 394
Sse9I AATT 6 cut(s) 106, 255, 290, 500, 587, 671
SsiI CCGC 1 cut(s) 236
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 7, 169
TaaI ACNGT 2 cut(s) 150, 300
TaiI ACGT 1 cut(s) 648
TaqI TCGA 1 cut(s) 731
TasI AATT 6 cut(s) 106, 255, 290, 500, 587, 671
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 502
TseI GCWGC 1 cut(s) 270
TspDTI ATGAA 5 cut(s) 17, 197, 230, 614, 635
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 502
Van91I CCANNNNNTGG 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 158, 455
XapI RAATTY 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 391
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.