Rw3G002890

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000230
Physical Location & Seq
Forward (+)
2560065 .. 2561414
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002890.1

Sequence Viewer

Length: 1350 bp
ATGGCTACCTTTTGTCATTATACTATAGTAGTCATCACAATTTTTTTCTTTCATCTTGTATATTGCTCTGTTACAGCAACATCCAATATCAACAATAATAATGGTGGCTTCAGCGCACATCTCATCAGAAGAAATTCCCCAAATTCACCATTATACAGGCACAAAAACAATAAAGTTTTTCGACGGTTGATCGGTGGAGACATGTTGGGATACCCACTACAAACCGATCCGATTAGTGGTATGCATATTTTGAAGTTATCAGTCGGAACCCCGCCCTCAGATATTTATGTTGTTGCTGATACAGGCAGCGATTTACTGTGGACGCAATGCAAGCCGTGTAACACTTGCTCCAACACCAACCATACCATGTTCGACCCGAGAAAATCCTCAACTTATAGGAACATTACTTGTTCTGAAAAAGAGTGTAGATTTGTCGACGATTCCAAACCATCGAGCCAGTCACCAAGCTTTTGTAGAAAGCATCCTACAAGAATGTGTGCTTACAATATGACGTATGCAGACTCGACATCCACTATAGGCGTTTTGGCAAAAGAAACAGTTACCTTGACATCCAGGACAGGTGAGGTTGTAACCCTCGAAGATATTGTCTTTGGGTGTGGGCATTTGACCTATGAACATGTTTCAACTGGAAATGAAATGGGAATAATTGGGCTTGGACGTGGGCCTTTGTCATTTGTTTCTCAAATTGCTCCACATGTTGGAGGGAACAAATTTTCTTATTGCTTGGTGCCTACGCATAGTGATCCTAAGTTTGAAAGCAAGATCCATTTCGGGAATGGGAGTGAAGTTTTGGGTGAAGGGGTTGTCTCAACACCATTGCCTGATGACAAGTATGGCTATACGGTGGTGGTAGAGGGAATTTCCATTGGTAATGAATTTGTTTCGTTCAACTCAACAGTGAAACCGCTCAAAAAGTTTAAGATGGTTGTCGACTCGGGCGCAAGTATTGGACATCTACCTCGAGATATTTGGGACCGGGTGATAACTCAGCTGAATAAGACGCTTGATCCAGAATTGGAGCCATCCATTGTATACGATGCCACGCAAGACAAAACACATTATTTAAGCTTTAAGTCGATGACAATTCCAGACGAACCAAAAGTGGCATTTCATTTCATGGGTGGTGGCAAACTGGAGTTAATGGCTGAACAAATTTTCATCAAATCTCCACAGGATGAGAAAAAAGTCTTCTTTGGAATCGGCTCTATGGATATTTTTTCTGAAGTGAATTTTGGTGTTTTTGGAGCCAATCTGCAGGGAAATTTGTTGATTGGTTATGACCTCGATAGAAATGTGGCATCCTTCAAGCCAACTAATTGCCTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

449

Amino Acids

49.59

Weight (kDa)

6.73

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 266 5.4e-50 Xylanase inhibitor N-terminal
Asp PF00026 85 - 134 1.1e-08 Eukaryotic aspartyl protease
Asp PF00026 167 - 441 1.1e-08 Eukaryotic aspartyl protease
TAXi_C PF14541 287 - 443 3e-11 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 719
AccBSI CCGCTC 1 cut(s) 928
AccI GTMKAC 3 cut(s) 435, 951, 1053
AciI CCGC 2 cut(s) 272, 926
AclWI GGATC 4 cut(s) 221, 758, 778, 1022
AcsI RAATTY 8 cut(s) 133, 142, 731, 879, 896, 1173, 1249, 1282
AcuI CTGAAG 2 cut(s) 94, 1263
AfiI CCNNNNNNNGG 2 cut(s) 236, 719
AflIII ACRYGT 3 cut(s) 201, 637, 715
AgsI TTSAA 5 cut(s) 253, 645, 776, 910, 1327
AjiI CACGTC 1 cut(s) 680
AjnI CCWGG 1 cut(s) 572
AjuI GAANNNNNNNTTGG 2 cut(s) 1236, 1268
AluBI AGCT 3 cut(s) 468, 1012, 1089
AluI AGCT 3 cut(s) 468, 1012, 1089
Alw26I GTCTC 2 cut(s) 192, 832
AlwI GGATC 4 cut(s) 221, 758, 778, 1022
Ama87I CYCGRG 3 cut(s) 376, 955, 981
AoxI GGCC 1 cut(s) 683
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 8 cut(s) 133, 142, 731, 879, 896, 1173, 1249, 1282
ArsI GACNNNNNNTTYG 2 cut(s) 591, 623
Asp700I GAANNNNTTC 1 cut(s) 133
AspLEI GCGC 2 cut(s) 116, 962
AspS9I GGNCC 2 cut(s) 683, 994
AsuC2I CCSGG 1 cut(s) 998
AsuHPI GGTGA 5 cut(s) 138, 453, 593, 827, 1012
AvaI CYCGRG 3 cut(s) 376, 955, 981
AvaII GGWCC 1 cut(s) 994
BanI GGYRCC 1 cut(s) 748
BbsI GAAGAC 1 cut(s) 1201
BbvI GCAGC 1 cut(s) 318
BccI CCATC 3 cut(s) 457, 937, 1051
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 574
BciVI GTATCC 1 cut(s) 203
BcnI CCSGG 1 cut(s) 998
BcoDI GTCTC 2 cut(s) 192, 832
BfmI CTRYAG 3 cut(s) 24, 534, 1274
BfuI GTATCC 1 cut(s) 203
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 574, 998
Bme18I GGWCC 1 cut(s) 994
BmeT110I CYCGRG 3 cut(s) 376, 955, 981
BmgBI CACGTC 1 cut(s) 680
BmgT120I GGNCC 2 cut(s) 683, 994
BmiI GGNNCC 5 cut(s) 268, 750, 995, 1041, 1267
BmrFI CCNGG 2 cut(s) 574, 998
BmsI GCATC 3 cut(s) 490, 1048, 1328
BpiI GAAGAC 1 cut(s) 1201
BpmI CTGGAG 1 cut(s) 1175
BpuMI CCSGG 1 cut(s) 998
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 719
Bse1I ACTGG 3 cut(s) 457, 652, 1158
Bse3DI GCAATG 2 cut(s) 332, 836
BseBI CCWGG 1 cut(s) 574
BseGI GGATG 7 cut(s) 80, 481, 527, 569, 1043, 1201, 1319
BseLI CCNNNNNNNGG 2 cut(s) 236, 719
BseMI GCAATG 2 cut(s) 332, 836
BseMII CTCAG 2 cut(s) 291, 1022
BseNI ACTGG 3 cut(s) 457, 652, 1158
BseXI GCAGC 1 cut(s) 318
BshFI GGCC 1 cut(s) 685
BshNI GGYRCC 1 cut(s) 748
BsiHKCI CYCGRG 3 cut(s) 376, 955, 981
BsiSI CCGG 1 cut(s) 997
BslFI GGGAC 1 cut(s) 1007
BslI CCNNNNNNNGG 2 cut(s) 236, 719
BsmAI GTCTC 2 cut(s) 192, 832
BsmFI GGGAC 1 cut(s) 1007
BsnI GGCC 1 cut(s) 685
BsoBI CYCGRG 3 cut(s) 376, 955, 981
Bsp143I GATC 5 cut(s) 189, 226, 763, 783, 1027
BspACI CCGC 2 cut(s) 272, 926
BspANI GGCC 1 cut(s) 685
BspCNI CTCAG 2 cut(s) 290, 1021
BspLI GGNNCC 5 cut(s) 268, 750, 995, 1041, 1267
BspMAI CTGCAG 1 cut(s) 1278
BspPI GGATC 4 cut(s) 221, 758, 778, 1022
BspT107I GGYRCC 1 cut(s) 748
BsrBI CCGCTC 1 cut(s) 928
BsrDI GCAATG 2 cut(s) 332, 836
BsrI ACTGG 3 cut(s) 457, 652, 1158
BssMI GATC 5 cut(s) 189, 226, 763, 783, 1027
BssNAI GTATAC 1 cut(s) 1054
Bst1107I GTATAC 1 cut(s) 1054
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 5 cut(s) 186, 318, 559, 865, 919
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 3 cut(s) 277, 768, 1008
BstF5I GGATG 7 cut(s) 80, 481, 527, 569, 1043, 1201, 1319
BstHHI GCGC 2 cut(s) 116, 962
BstKTI GATC 5 cut(s) 192, 229, 766, 786, 1030
BstMAI GTCTC 2 cut(s) 192, 832
BstMBI GATC 5 cut(s) 189, 226, 763, 783, 1027
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 574
BstNSI RCATGY 3 cut(s) 205, 641, 719
BstSCI CCNGG 2 cut(s) 572, 996
BstSFI CTRYAG 3 cut(s) 24, 534, 1274
BstV1I GCAGC 1 cut(s) 318
BstV2I GAAGAC 1 cut(s) 1201
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
BstZ17I GTATAC 1 cut(s) 1054
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 685
BtrI CACGTC 1 cut(s) 680
BtsCI GGATG 7 cut(s) 80, 481, 527, 569, 1043, 1201, 1319
BtsIMutI CAGTG 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 332
CfoI GCGC 2 cut(s) 116, 962
Cfr13I GGNCC 2 cut(s) 683, 994
CseI GACGC 2 cut(s) 331, 1030
CviAII CATG 5 cut(s) 202, 367, 638, 716, 1138
DdeI CTNAG 3 cut(s) 277, 768, 1008
DpnI GATC 5 cut(s) 191, 228, 765, 785, 1029
DpnII GATC 5 cut(s) 189, 226, 763, 783, 1027
Eco47I GGWCC 1 cut(s) 994
Eco57I CTGAAG 2 cut(s) 94, 1263
Eco88I CYCGRG 3 cut(s) 376, 955, 981
EcoRII CCWGG 1 cut(s) 572
EcoT22I ATGCAT 1 cut(s) 246
FaeI CATG 5 cut(s) 205, 370, 641, 719, 1141
FaqI GGGAC 1 cut(s) 1007
FatI CATG 5 cut(s) 201, 366, 637, 715, 1137
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 3 cut(s) 435, 951, 1053
Fnu4HI GCNGC 1 cut(s) 307
FokI GGATG 7 cut(s) 67, 468, 514, 556, 1030, 1208, 1306
Fsp4HI GCNGC 1 cut(s) 307
GlaI GCGC 2 cut(s) 115, 961
GluI GCNGC 1 cut(s) 307
GsuI CTGGAG 1 cut(s) 1175
HaeIII GGCC 1 cut(s) 685
HapII CCGG 1 cut(s) 997
HgaI GACGC 2 cut(s) 331, 1030
HhaI GCGC 2 cut(s) 116, 962
Hin1II CATG 5 cut(s) 205, 370, 641, 719, 1141
Hin6I GCGC 2 cut(s) 114, 960
HinP1I GCGC 2 cut(s) 114, 960
HincII GTYRAC 2 cut(s) 436, 952
HindII GTYRAC 2 cut(s) 436, 952
HindIII AAGCTT 2 cut(s) 466, 1087
HinfI GANTC 4 cut(s) 440, 521, 953, 1218
HpaII CCGG 1 cut(s) 997
HphI GGTGA 5 cut(s) 138, 453, 593, 827, 1012
Hpy166II GTNNAC 4 cut(s) 321, 436, 952, 1054
Hpy188I TCNGA 6 cut(s) 128, 231, 266, 280, 415, 1243
Hpy188III TCNNGA 4 cut(s) 793, 983, 1031, 1109
Hpy8I GTNNAC 4 cut(s) 321, 436, 952, 1054
Hpy99I CGWCG 2 cut(s) 186, 440
HpyAV CCTTC 2 cut(s) 812, 1333
HpyCH4III ACNGT 5 cut(s) 186, 318, 559, 865, 919
HpyCH4IV ACGT 2 cut(s) 512, 679
HpyCH4V TGCA 4 cut(s) 244, 330, 518, 1276
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 3 cut(s) 277, 768, 1008
HpySE526I ACGT 2 cut(s) 512, 679
Hsp92II CATG 5 cut(s) 205, 370, 641, 719, 1141
HspAI GCGC 2 cut(s) 114, 960
Kzo9I GATC 5 cut(s) 189, 226, 763, 783, 1027
LmnI GCTCC 4 cut(s) 353, 715, 1039, 1265
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 3 cut(s) 490, 1048, 1328
MaeII ACGT 2 cut(s) 512, 679
MaeIII GTNAC 5 cut(s) 70, 338, 459, 559, 589
MalI GATC 5 cut(s) 191, 228, 765, 785, 1029
MbiI CCGCTC 1 cut(s) 928
MboI GATC 5 cut(s) 189, 226, 763, 783, 1027
MboII GAAGA 3 cut(s) 141, 611, 1201
MflI RGATCY 1 cut(s) 783
MlyI GAGTC 2 cut(s) 515, 947
MmeI TCCRAC 3 cut(s) 244, 375, 700
MnlI CCTC 8 cut(s) 286, 397, 577, 605, 716, 868, 990, 1313
Mph1103I ATGCAT 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 4 cut(s) 939, 1085, 1092, 1160
MspA1I CMGCKG 1 cut(s) 1012
MspI CCGG 1 cut(s) 997
MspR9I CCNGG 2 cut(s) 574, 998
MvaI CCWGG 1 cut(s) 574
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 998
NdeII GATC 5 cut(s) 189, 226, 763, 783, 1027
NlaIII CATG 5 cut(s) 205, 370, 641, 719, 1141
NlaIV GGNNCC 5 cut(s) 268, 750, 995, 1041, 1267
NmuCI GTSAC 1 cut(s) 459
NsiI ATGCAT 1 cut(s) 246
NspI RCATGY 3 cut(s) 205, 641, 719
PaeR7I CTCGAG 1 cut(s) 981
PciI ACATGT 3 cut(s) 201, 637, 715
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 2 cut(s) 440, 1218
PflMI CCANNNNNTGG 1 cut(s) 719
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 1 cut(s) 308
PleI GAGTC 2 cut(s) 515, 947
PpsI GAGTC 2 cut(s) 515, 947
PscI ACATGT 3 cut(s) 201, 637, 715
Psp6I CCWGG 1 cut(s) 572
PspGI CCWGG 1 cut(s) 572
PspN4I GGNNCC 5 cut(s) 268, 750, 995, 1041, 1267
PspPI GGNCC 2 cut(s) 683, 994
PstI CTGCAG 1 cut(s) 1278
PsuI RGATCY 1 cut(s) 783
PvuII CAGCTG 1 cut(s) 1012
SalI GTCGAC 2 cut(s) 434, 950
SaqAI TTAA 4 cut(s) 939, 1085, 1092, 1160
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 5 cut(s) 189, 226, 763, 783, 1027
Sau96I GGNCC 2 cut(s) 683, 994
SchI GAGTC 2 cut(s) 515, 947
ScrFI CCNGG 2 cut(s) 574, 998
SfaNI GCATC 3 cut(s) 490, 1048, 1328
SfcI CTRYAG 3 cut(s) 24, 534, 1274
Sfr274I CTCGAG 1 cut(s) 981
SinI GGWCC 1 cut(s) 994
SlaI CTCGAG 1 cut(s) 981
SmlI CTYRAG 1 cut(s) 981
SmoI CTYRAG 1 cut(s) 981
SsiI CCGC 2 cut(s) 272, 926
StyD4I CCNGG 2 cut(s) 572, 996
TaaI ACNGT 5 cut(s) 186, 318, 559, 865, 919
TaiI ACGT 2 cut(s) 515, 682
TfiI GAWTC 2 cut(s) 440, 1218
Tru1I TTAA 4 cut(s) 939, 1085, 1092, 1160
Tru9I TTAA 4 cut(s) 939, 1085, 1092, 1160
TscAI CASTG 1 cut(s) 924
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 7 cut(s) 41, 648, 669, 909, 1121, 1126, 1168
TspRI CASTG 1 cut(s) 924
Van91I CCANNNNNTGG 1 cut(s) 719
VpaK11BI GGWCC 1 cut(s) 994
XapI RAATTY 8 cut(s) 133, 142, 731, 879, 896, 1173, 1249, 1282
XceI RCATGY 3 cut(s) 205, 641, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 794
XhoI CTCGAG 1 cut(s) 981
XmiI GTMKAC 3 cut(s) 435, 951, 1053
XmnI GAANNNNTTC 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.