FvH4_6g24220

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000230
Physical Location & Seq
Forward (+)
18266401 .. 18267877
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24220.t1

Sequence Viewer

Length: 1263 bp
ATGGCAGCCATGGATACTATCCTTTGTCATGCACTCTTTGGTGTAGCATTTGTGATTACTCTTTTCATATATCTTGGATCAACCTCTGCTACAGAAGCAAGCAATGGTGGGTTTAGTGTCAAACTTGTCCACCGAAATTCCCCAAAATCGCCGTTCTACAATCCTAGCAAAGCTTCTACGAGCAAGCCACAGTCACCAGTACAAGCCAACAACGGCCAGTATCTTATGAAGCTCTCACTCGGAAATCCTCAATTTGATCTTTACGGCATTGCTGATACAGGCAGTGACTTATTGTGGGCACAATGTGTACCATGTGAGGGCTGCTATAAGCAAATCAAACCCAAATTTGATCCGAATAAGTCATCAACATATAGCGACCTACCTTGTGATGCACCAGAATGTAGTTTGGTTCCTAATTCTTGTTCAACACAAAATGTTTGCAATTACGATTACGAATACGGAGACGGTTCGGTGGTCAGGGGGGTATTGGCTAAAGAGACCATTTTCCTAGAATCCACGTCTGGGAATGGTACTGTTGCCCTAAAAGGTATTACCTTTGGTTGTGGACATAACGATACAGGGGTTTTTAACCAAGATGATATGGGTCTAATTGGCCTTGGAGGAGGGCCTATATCTTTCATTTCTCAAATGGCTCCCTTGGTTGGAGGCAAGAAGTTCTCATACTGTTTGGTTCCATTTCATACTGACCCTAGTATCGAAAGCAAGATGAGCTTCGGAAAGGGCAGTGAAGTGTTGGGTGAAGGTGTGGTTACAGTGCCGTTGGTGCCGAAAGACGACACCTTTTATTCTGTGACGGTGGAAGGATTTAGCGTCGGAGACAAGTTTGTGCCTTTTGATTCATCAGGGAAAGTTGAGAAGGGCAACATATTCCTCGACTCCGGGACACCACCTACTTATATACCAACAGATTTATATGAAAGGTTGGTAGCCGAGCTGGGGAAACAGATTCCGATGGCACCGATTAAAGATGACCCAGATTTGGGGAATCAGCTGTGCTACAAAACCAAGACGAATCTCAAGGGACCAATATTGACGGTGCATTTTGAAGGGGGTACTAATGTGAAGTTGACATCAACACAAACCTTTATTCCACCAAAAGATGAGGTTTTCTGCTTTGCAATGATAGGCGATGACAGTGGTGTTAACATTTATGGAAACTTTGCTCAGACAAATTTCTTGATTGGAATGGACCTTGAAAAAAGGGTGGTCTCTTTCAAGTCAACTGATTGCGTCAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

421

Amino Acids

45.14

Weight (kDa)

5.01

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 74 - 247 9.3e-49 Xylanase inhibitor N-terminal
Asp PF00026 144 - 412 2.1e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 269 - 413 1.1e-22 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 784, 976
AclWI GGATC 2 cut(s) 85, 344
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 3 cut(s) 136, 344, 1192
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 4 cut(s) 201, 309, 532, 1075
AfiI CCNNNNNNNGG 6 cut(s) 317, 522, 662, 957, 1000, 1001
AgsI TTSAA 4 cut(s) 426, 1067, 1217, 1237
AjiI CACGTC 1 cut(s) 519
AluBI AGCT 5 cut(s) 173, 232, 732, 955, 1012
AluI AGCT 5 cut(s) 173, 232, 732, 955, 1012
Alw26I GTCTC 4 cut(s) 456, 491, 831, 1234
AlwI GGATC 2 cut(s) 85, 344
AoxI GGCC 3 cut(s) 214, 613, 626
ApeKI GCWGC 2 cut(s) 5, 321
ApoI RAATTY 3 cut(s) 136, 344, 1192
AspS9I GGNCC 3 cut(s) 626, 1043, 1210
AsuC2I CCSGG 1 cut(s) 901
AsuHPI GGTGA 2 cut(s) 186, 770
AvaII GGWCC 2 cut(s) 1043, 1210
BaeGI GKGCMC 1 cut(s) 301
BaeI ACNNNNGTAYC 6 cut(s) 567, 600, 697, 730, 1065, 1098
BanI GGYRCC 2 cut(s) 784, 976
BarI GAAGNNNNNNTAC 2 cut(s) 665, 697
BbvI GCAGC 2 cut(s) 17, 308
BccI CCATC 1 cut(s) 967
BceAI ACGGC 4 cut(s) 136, 229, 280, 763
BciVI GTATCC 1 cut(s) 7
BcnI CCSGG 1 cut(s) 901
BcoDI GTCTC 4 cut(s) 456, 491, 831, 1234
BfaI CTAG 3 cut(s) 165, 509, 711
BfmI CTRYAG 1 cut(s) 90
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 2 cut(s) 6, 322
BlsI GCNGC 2 cut(s) 7, 323
Bme1390I CCNGG 1 cut(s) 901
Bme18I GGWCC 2 cut(s) 1043, 1210
BmgBI CACGTC 1 cut(s) 519
BmgT120I GGNCC 3 cut(s) 626, 1043, 1210
BmiI GGNNCC 6 cut(s) 411, 654, 693, 786, 978, 1044
BmrFI CCNGG 1 cut(s) 901
BmsI GCATC 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 1022
BpuMI CCSGG 1 cut(s) 901
BsaI GGTCTC 2 cut(s) 491, 1234
BsaJI CCNNGG 3 cut(s) 9, 616, 657
Bsc4I CCNNNNNNNGG 6 cut(s) 317, 522, 662, 957, 1000, 1001
Bse1I ACTGG 2 cut(s) 197, 217
Bse3DI GCAATG 3 cut(s) 109, 267, 1146
BseDI CCNNGG 3 cut(s) 9, 616, 657
BseLI CCNNNNNNNGG 6 cut(s) 317, 522, 662, 957, 1000, 1001
BseMI GCAATG 3 cut(s) 109, 267, 1146
BseMII CTCAG 1 cut(s) 1199
BseNI ACTGG 2 cut(s) 197, 217
BseRI GAGGAG 1 cut(s) 636
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 2 cut(s) 17, 308
BseYI CCCAGC 1 cut(s) 955
BshFI GGCC 3 cut(s) 216, 615, 628
BshNI GGYRCC 2 cut(s) 784, 976
BsiSI CCGG 1 cut(s) 900
BslFI GGGAC 2 cut(s) 916, 1056
BslI CCNNNNNNNGG 6 cut(s) 317, 522, 662, 957, 1000, 1001
BsmAI GTCTC 4 cut(s) 456, 491, 831, 1234
BsmBI CGTCTC 1 cut(s) 456
BsmFI GGGAC 2 cut(s) 916, 1056
BsnI GGCC 3 cut(s) 216, 615, 628
Bso31I GGTCTC 2 cut(s) 491, 1234
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 3 cut(s) 77, 256, 349
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 3 cut(s) 216, 615, 628
BspCNI CTCAG 1 cut(s) 1198
BspLI GGNNCC 6 cut(s) 411, 654, 693, 786, 978, 1044
BspPI GGATC 2 cut(s) 85, 344
BspT107I GGYRCC 2 cut(s) 784, 976
BspTNI GGTCTC 2 cut(s) 491, 1234
BsrDI GCAATG 3 cut(s) 109, 267, 1146
BsrI ACTGG 2 cut(s) 197, 217
BssECI CCNNGG 3 cut(s) 9, 616, 657
BssMI GATC 3 cut(s) 77, 256, 349
BssT1I CCWWGG 3 cut(s) 9, 616, 657
Bst4CI ACNGT 8 cut(s) 192, 467, 535, 686, 775, 817, 1057, 1157
BstC8I GCNNGC 2 cut(s) 100, 185
BstDEI CTNAG 1 cut(s) 1185
BstDSI CCRYGG 1 cut(s) 9
BstKTI GATC 3 cut(s) 80, 259, 352
BstMAI GTCTC 4 cut(s) 456, 491, 831, 1234
BstMBI GATC 3 cut(s) 77, 256, 349
BstMWI GCNNNNNNNGC 3 cut(s) 95, 729, 784
BstSCI CCNGG 1 cut(s) 899
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 17, 308
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 3 cut(s) 216, 615, 628
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 1164
BtrI CACGTC 1 cut(s) 519
BtsI GCAGTG 2 cut(s) 289, 751
BtsIMutI CAGTG 4 cut(s) 289, 751, 780, 1162
Cac8I GCNNGC 2 cut(s) 100, 185
Cfr13I GGNCC 3 cut(s) 626, 1043, 1210
CseI GACGC 2 cut(s) 820, 1240
Csp6I GTAC 4 cut(s) 200, 308, 531, 1074
CviAII CATG 3 cut(s) 10, 29, 312
CviQI GTAC 4 cut(s) 200, 308, 531, 1074
DdeI CTNAG 1 cut(s) 1185
DpnI GATC 3 cut(s) 79, 258, 351
DpnII GATC 3 cut(s) 77, 256, 349
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 214
Eco130I CCWWGG 3 cut(s) 9, 616, 657
Eco31I GGTCTC 2 cut(s) 491, 1234
Eco47I GGWCC 2 cut(s) 1043, 1210
EcoO109I RGGNCCY 1 cut(s) 626
EcoT14I CCWWGG 3 cut(s) 9, 616, 657
ErhI CCWWGG 3 cut(s) 9, 616, 657
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 3 cut(s) 13, 32, 315
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 2 cut(s) 916, 1056
FatI CATG 3 cut(s) 9, 28, 311
Fnu4HI GCNGC 2 cut(s) 6, 322
Fsp4HI GCNGC 2 cut(s) 6, 322
FspBI CTAG 3 cut(s) 165, 509, 711
GluI GCNGC 2 cut(s) 6, 322
GsaI CCCAGC 1 cut(s) 959
HaeIII GGCC 3 cut(s) 216, 615, 628
HapII CCGG 1 cut(s) 900
HgaI GACGC 2 cut(s) 820, 1240
Hin1II CATG 3 cut(s) 13, 32, 315
HincII GTYRAC 3 cut(s) 1089, 1165, 1242
HindII GTYRAC 3 cut(s) 1089, 1165, 1242
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 6 cut(s) 512, 857, 896, 967, 1006, 1033
HpaI GTTAAC 1 cut(s) 1165
HpaII CCGG 1 cut(s) 900
HphI GGTGA 2 cut(s) 186, 770
Hpy166II GTNNAC 6 cut(s) 130, 308, 566, 1089, 1165, 1242
Hpy188I TCNGA 6 cut(s) 242, 354, 737, 836, 972, 1188
Hpy188III TCNNGA 1 cut(s) 1198
Hpy8I GTNNAC 6 cut(s) 130, 308, 566, 1089, 1165, 1242
Hpy99I CGWCG 1 cut(s) 836
HpyAV CCTTC 4 cut(s) 755, 815, 871, 1061
HpyCH4III ACNGT 8 cut(s) 192, 467, 535, 686, 775, 817, 1057, 1157
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 5 cut(s) 32, 392, 441, 1060, 1139
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 729, 784
HpyF3I CTNAG 1 cut(s) 1185
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 3 cut(s) 13, 32, 315
KspAI GTTAAC 1 cut(s) 1165
Kzo9I GATC 3 cut(s) 77, 256, 349
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 2 cut(s) 17, 308
LweI GCATC 1 cut(s) 379
MaeI CTAG 3 cut(s) 165, 509, 711
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 4 cut(s) 192, 284, 769, 811
MalI GATC 3 cut(s) 79, 258, 351
MboI GATC 3 cut(s) 77, 256, 349
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 7 cut(s) 136, 251, 344, 415, 442, 609, 1192
MlyI GAGTC 1 cut(s) 890
MmeI TCCRAC 2 cut(s) 643, 814
MnlI CCTC 8 cut(s) 94, 258, 310, 614, 617, 659, 902, 1117
MseI TTAA 4 cut(s) 588, 984, 1164, 1261
MslI CAYNNNNRTG 1 cut(s) 397
MspA1I CMGCKG 1 cut(s) 1012
MspI CCGG 1 cut(s) 900
MspR9I CCNGG 1 cut(s) 901
MwoI GCNNNNNNNGC 3 cut(s) 95, 729, 784
NciI CCSGG 1 cut(s) 901
NcoI CCATGG 1 cut(s) 9
NdeII GATC 3 cut(s) 77, 256, 349
NlaIII CATG 3 cut(s) 13, 32, 315
NlaIV GGNNCC 6 cut(s) 411, 654, 693, 786, 978, 1044
NmeAIII GCCGAG 1 cut(s) 976
NmuCI GTSAC 3 cut(s) 192, 284, 811
PfeI GAWTC 5 cut(s) 512, 857, 967, 1006, 1033
PfoI TCCNGGA 1 cut(s) 899
PkrI GCNGC 2 cut(s) 7, 323
PleI GAGTC 1 cut(s) 890
PpsI GAGTC 1 cut(s) 890
PspFI CCCAGC 1 cut(s) 955
PspN4I GGNNCC 6 cut(s) 411, 654, 693, 786, 978, 1044
PspPI GGNCC 3 cut(s) 626, 1043, 1210
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 4 cut(s) 201, 309, 532, 1075
RsaNI GTAC 4 cut(s) 200, 308, 531, 1074
RseI CAYNNNNRTG 1 cut(s) 397
SaqAI TTAA 4 cut(s) 588, 984, 1164, 1261
SatI GCNGC 2 cut(s) 6, 322
Sau3AI GATC 3 cut(s) 77, 256, 349
Sau96I GGNCC 3 cut(s) 626, 1043, 1210
SchI GAGTC 1 cut(s) 890
ScrFI CCNGG 1 cut(s) 901
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 2 cut(s) 1043, 1210
SmiMI CAYNNNNRTG 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
Sse9I AATT 7 cut(s) 136, 251, 344, 415, 442, 609, 1192
SspI AATATT 1 cut(s) 1050
SspMI CTAG 3 cut(s) 165, 509, 711
StyD4I CCNGG 1 cut(s) 899
StyI CCWWGG 3 cut(s) 9, 616, 657
TaaI ACNGT 8 cut(s) 192, 467, 535, 686, 775, 817, 1057, 1157
TaiI ACGT 1 cut(s) 521
TaqI TCGA 2 cut(s) 717, 894
TasI AATT 7 cut(s) 136, 251, 344, 415, 442, 609, 1192
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 5 cut(s) 512, 857, 967, 1006, 1033
Tru1I TTAA 4 cut(s) 588, 984, 1164, 1261
Tru9I TTAA 4 cut(s) 588, 984, 1164, 1261
TscAI CASTG 4 cut(s) 289, 751, 780, 1162
TseFI GTSAC 3 cut(s) 192, 284, 811
TseI GCWGC 2 cut(s) 5, 321
Tsp45I GTSAC 3 cut(s) 192, 284, 811
TspDTI ATGAA 6 cut(s) 55, 242, 628, 689, 849, 951
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 4 cut(s) 289, 751, 780, 1162
VpaK11BI GGWCC 2 cut(s) 1043, 1210
XapI RAATTY 3 cut(s) 136, 344, 1192
XspI CTAG 3 cut(s) 165, 509, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.