Rroxscaffold_164G00436250

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0000230
Physical Location & Seq
Reverse (-)
205073 .. 208579
3507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436250.1

Sequence Viewer

Length: 1254 bp
ATGAAGTCGTTCCCCGACGTTGTGGAGGCCGCGCTTGCCTCATTGGAGGTCAGTGGACAAGGTGGTGGTGGAGCAACAACAAATATCAACAATAATAATGGTGGCTTCAGCACACATCTCATCAAAAGAAATTCCCCAAATTCACCATTATACAGGCACAAAAACAACAATGTTTTTCGGCGGTTGATGGGTGGAGACATGTCGGGATACCCACTACTACTCGATCCGATTAGTGATGGACATATTATGAAGTTATCAATCGGAACCCCGCCCTCAGATATTTATGTAATTGCTGATACAGGCAGCACTCTACTGTGGACGCAATGCAAGTCGTGTAAAACTTGCTTCAAGACCAAATATGCCATGTTCGACCCGAGAAAATCCTCAACTTATAGGAACATAACTTGTTCTGAAAGAGAGTACACGGCATCCAGTGTAGGTGTGTTGGCAAAAGAAACAATTACTTTGACATCCAAGACAGGTGAGGTTGTAACCCTAGAAGATATTGTCTTTGGGTGTGGGCATTTGAATTATGAACCTGTTTCAACTGGAAATGAAATGGGAGTGATTGGGCTTGGACGTGGGCCTTTGTCATTTGTTTCTCAAATTGCTCCCCATGTTGGAGGGAACAAATTTTCTTATTGCTTGGTGCCTAAGCGTACTGATCCCAGATTTGAAAGCAAGATCAATTTCGGGAATGGGAGTGAAGTTTTGGGTGAAGGGGTTGTCTCAACACCATTGCTTGATGTTGATGACAGTTCTATCTATACAGTGGCAGTAGAGGGAATTAGCATTGGAAATGAATTTGTTCCGTTCAACTCAACAGTGAAACCGCTCAAAAAATTTAAAATGACTGTCGACTCGGGCGCAAGTATTGGACATCTACCTCGAGATATTTGGGACCGGGTGATAACTCAGCTAAATAAGACGCTTGATCCAGAATTGAAGCCGACCATTGTATACAATGCCACGGCAGACAAAACACATTATTTATGCTTTAACTCGATGACAATTCCAGAAGAACCAAAAATGGCATTTCATTTCATGGGTGGTGGCAAACTGGAGTTAATGGCAGAACAAATATTCATCAAATCTCCACAGGAGGAGAACAAAGTCTTCTTTGGAATCGGCTGTATGGATGCTGTCGTGGGTGATGGTGTTTTTGGTGCCAATCTGCAGGGAAATTTGTTGATTGGTTATGACCTCGATAGAAATGTGGCATCCTTCAAGCCAACTAATTGCCTAAACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

417

Amino Acids

45.32

Weight (kDa)

6.26

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 82 - 141 2.6e-16 Xylanase inhibitor N-terminal
Asp PF00026 83 - 408 3.4e-20 Eukaryotic aspartyl protease
TAXi_N PF14543 143 - 233 7.7e-20 Xylanase inhibitor N-terminal
TAXi_C PF14541 256 - 410 2.8e-13 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 649, 1166
AccBSI CCGCTC 1 cut(s) 835
AccI GTMKAC 2 cut(s) 858, 960
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 30, 181, 269, 833
AclWI GGATC 3 cut(s) 218, 659, 929
AcsI RAATTY 6 cut(s) 130, 139, 632, 803, 842, 1183
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 2 cut(s) 422, 661
AfiI CCNNNNNNNGG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 7 cut(s) 349, 529, 546, 677, 817, 946, 1228
AjiI CACGTC 1 cut(s) 581
AluBI AGCT 1 cut(s) 919
AluI AGCT 1 cut(s) 919
Alw26I GTCTC 2 cut(s) 189, 733
AlwI GGATC 3 cut(s) 218, 659, 929
Ama87I CYCGRG 3 cut(s) 373, 862, 888
AoxI GGCC 2 cut(s) 27, 584
ApeKI GCWGC 1 cut(s) 303
ApoI RAATTY 6 cut(s) 130, 139, 632, 803, 842, 1183
Asp700I GAANNNNTTC 2 cut(s) 8, 807
AspLEI GCGC 2 cut(s) 34, 869
AspS9I GGNCC 2 cut(s) 584, 901
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 5 cut(s) 135, 494, 728, 919, 1163
AvaI CYCGRG 3 cut(s) 373, 862, 888
AvaII GGWCC 1 cut(s) 901
BanI GGYRCC 2 cut(s) 649, 1166
BbsI GAAGAC 1 cut(s) 1108
BbvI GCAGC 1 cut(s) 315
BccI CCATC 3 cut(s) 181, 230, 1148
BceAI ACGGC 2 cut(s) 441, 987
BciVI GTATCC 1 cut(s) 200
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 2 cut(s) 189, 733
BfaI CTAG 2 cut(s) 497, 1252
BfmI CTRYAG 1 cut(s) 1175
BfuI GTATCC 1 cut(s) 200
BisI GCNGC 2 cut(s) 30, 304
BlsI GCNGC 2 cut(s) 31, 305
Bme1390I CCNGG 1 cut(s) 905
Bme18I GGWCC 1 cut(s) 901
BmeT110I CYCGRG 3 cut(s) 373, 862, 888
BmgBI CACGTC 1 cut(s) 581
BmgT120I GGNCC 2 cut(s) 584, 901
BmiI GGNNCC 4 cut(s) 265, 651, 902, 1168
BmrFI CCNGG 1 cut(s) 905
BmsI GCATC 3 cut(s) 437, 1129, 1229
BpiI GAAGAC 1 cut(s) 1108
BpmI CTGGAG 1 cut(s) 1082
Bpu10I CCTNAGC 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 905
BsaJI CCNNGG 1 cut(s) 969
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 3 cut(s) 432, 553, 1065
Bse3DI GCAATG 2 cut(s) 329, 737
BseDI CCNNGG 1 cut(s) 969
BseGI GGATG 4 cut(s) 428, 470, 1144, 1220
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 2 cut(s) 329, 737
BseMII CTCAG 2 cut(s) 288, 929
BseNI ACTGG 3 cut(s) 432, 553, 1065
BseRI GAGGAG 1 cut(s) 1118
BseXI GCAGC 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 29, 586
BshNI GGYRCC 2 cut(s) 649, 1166
BsiHKCI CYCGRG 3 cut(s) 373, 862, 888
BsiSI CCGG 1 cut(s) 904
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 189, 733
BsmFI GGGAC 1 cut(s) 914
BsnI GGCC 2 cut(s) 29, 586
BsoBI CYCGRG 3 cut(s) 373, 862, 888
Bsp143I GATC 4 cut(s) 223, 664, 684, 934
BspACI CCGC 4 cut(s) 30, 181, 269, 833
BspANI GGCC 2 cut(s) 29, 586
BspCNI CTCAG 2 cut(s) 287, 928
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 4 cut(s) 265, 651, 902, 1168
BspMAI CTGCAG 1 cut(s) 1179
BspPI GGATC 3 cut(s) 218, 659, 929
BspT107I GGYRCC 2 cut(s) 649, 1166
BsrBI CCGCTC 1 cut(s) 835
BsrDI GCAATG 2 cut(s) 329, 737
BsrI ACTGG 3 cut(s) 432, 553, 1065
BssECI CCNNGG 1 cut(s) 969
BssMI GATC 4 cut(s) 223, 664, 684, 934
BssNAI GTATAC 1 cut(s) 961
Bst1107I GTATAC 1 cut(s) 961
Bst4CI ACNGT 5 cut(s) 315, 758, 772, 826, 856
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 274, 654, 915
BstDSI CCRYGG 1 cut(s) 969
BstF5I GGATG 4 cut(s) 428, 470, 1144, 1220
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 2 cut(s) 34, 869
BstKTI GATC 4 cut(s) 226, 667, 687, 937
BstMAI GTCTC 2 cut(s) 189, 733
BstMBI GATC 4 cut(s) 223, 664, 684, 934
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 903
BstSFI CTRYAG 1 cut(s) 1175
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 1108
BstZ17I GTATAC 1 cut(s) 961
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 2 cut(s) 29, 586
BtgI CCRYGG 1 cut(s) 969
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 4 cut(s) 428, 470, 1144, 1220
BtsIMutI CAGTG 4 cut(s) 58, 439, 777, 831
Cac8I GCNNGC 1 cut(s) 36
CfoI GCGC 2 cut(s) 34, 869
Cfr13I GGNCC 2 cut(s) 584, 901
CseI GACGC 2 cut(s) 328, 937
Csp6I GTAC 2 cut(s) 421, 660
CviAII CATG 4 cut(s) 199, 364, 617, 1045
CviJI RGCY 8 cut(s) 29, 105, 574, 586, 919, 949, 1131, 1231
CviKI_1 RGCY 8 cut(s) 29, 105, 574, 586, 919, 949, 1131, 1231
CviQI GTAC 2 cut(s) 421, 660
DdeI CTNAG 3 cut(s) 274, 654, 915
DpnI GATC 4 cut(s) 225, 666, 686, 936
DpnII GATC 4 cut(s) 223, 664, 684, 934
DraI TTTAAA 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 91
Eco88I CYCGRG 3 cut(s) 373, 862, 888
FaeI CATG 4 cut(s) 202, 367, 620, 1048
FaqI GGGAC 1 cut(s) 914
FatI CATG 4 cut(s) 198, 363, 616, 1044
FauI CCCGC 1 cut(s) 276
FblI GTMKAC 2 cut(s) 858, 960
Fnu4HI GCNGC 2 cut(s) 30, 304
FokI GGATG 4 cut(s) 415, 457, 1151, 1207
Fsp4HI GCNGC 2 cut(s) 30, 304
FspBI CTAG 2 cut(s) 497, 1252
GlaI GCGC 2 cut(s) 33, 868
GluI GCNGC 2 cut(s) 30, 304
GsuI CTGGAG 1 cut(s) 1082
HaeIII GGCC 2 cut(s) 29, 586
HapII CCGG 1 cut(s) 904
HgaI GACGC 2 cut(s) 328, 937
HhaI GCGC 2 cut(s) 34, 869
Hin1II CATG 4 cut(s) 202, 367, 620, 1048
Hin6I GCGC 2 cut(s) 32, 867
HinP1I GCGC 2 cut(s) 32, 867
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 2 cut(s) 860, 1125
HpaII CCGG 1 cut(s) 904
HphI GGTGA 5 cut(s) 135, 494, 728, 919, 1163
Hpy166II GTNNAC 5 cut(s) 56, 318, 423, 859, 961
Hpy188I TCNGA 4 cut(s) 228, 263, 277, 412
Hpy188III TCNNGA 6 cut(s) 204, 349, 694, 890, 938, 1016
Hpy8I GTNNAC 5 cut(s) 56, 318, 423, 859, 961
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 713, 1234
HpyCH4III ACNGT 5 cut(s) 315, 758, 772, 826, 856
HpyCH4IV ACGT 2 cut(s) 18, 580
HpyCH4V TGCA 2 cut(s) 327, 1177
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 3 cut(s) 274, 654, 915
HpySE526I ACGT 2 cut(s) 18, 580
Hsp92II CATG 4 cut(s) 202, 367, 620, 1048
HspAI GCGC 2 cut(s) 32, 867
Kzo9I GATC 4 cut(s) 223, 664, 684, 934
LmnI GCTCC 2 cut(s) 71, 616
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 3 cut(s) 437, 1129, 1229
MaeI CTAG 2 cut(s) 497, 1252
MaeII ACGT 2 cut(s) 18, 580
MaeIII GTNAC 1 cut(s) 490
MalI GATC 4 cut(s) 225, 666, 686, 936
MbiI CCGCTC 1 cut(s) 835
MboI GATC 4 cut(s) 223, 664, 684, 934
MboII GAAGA 3 cut(s) 512, 1031, 1108
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 1 cut(s) 601
MroXI GAANNNNTTC 2 cut(s) 8, 807
MseI TTAA 3 cut(s) 846, 999, 1067
MspI CCGG 1 cut(s) 904
MspR9I CCNGG 1 cut(s) 905
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 905
NdeII GATC 4 cut(s) 223, 664, 684, 934
NlaIII CATG 4 cut(s) 202, 367, 620, 1048
NlaIV GGNNCC 4 cut(s) 265, 651, 902, 1168
NspI RCATGY 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 888
PciI ACATGT 1 cut(s) 198
PdmI GAANNNNTTC 2 cut(s) 8, 807
PfeI GAWTC 1 cut(s) 1125
PkrI GCNGC 2 cut(s) 31, 305
PleI GAGTC 1 cut(s) 854
PpsI GAGTC 1 cut(s) 854
PscI ACATGT 1 cut(s) 198
PspN4I GGNNCC 4 cut(s) 265, 651, 902, 1168
PspPI GGNCC 2 cut(s) 584, 901
PstI CTGCAG 1 cut(s) 1179
RsaI GTAC 2 cut(s) 422, 661
RsaNI GTAC 2 cut(s) 421, 660
SalI GTCGAC 1 cut(s) 857
SaqAI TTAA 3 cut(s) 846, 999, 1067
SatI GCNGC 2 cut(s) 30, 304
Sau3AI GATC 4 cut(s) 223, 664, 684, 934
Sau96I GGNCC 2 cut(s) 584, 901
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 1 cut(s) 905
SfaNI GCATC 3 cut(s) 437, 1129, 1229
SfcI CTRYAG 1 cut(s) 1175
Sfr274I CTCGAG 1 cut(s) 888
SinI GGWCC 1 cut(s) 901
SlaI CTCGAG 1 cut(s) 888
SmlI CTYRAG 1 cut(s) 888
SmoI CTYRAG 1 cut(s) 888
SsiI CCGC 4 cut(s) 30, 181, 269, 833
SspI AATATT 1 cut(s) 1083
SspMI CTAG 2 cut(s) 497, 1252
StyD4I CCNGG 1 cut(s) 903
TaaI ACNGT 5 cut(s) 315, 758, 772, 826, 856
TaiI ACGT 2 cut(s) 21, 583
TaqI TCGA 6 cut(s) 222, 369, 858, 889, 1004, 1206
TatI WGTACW 1 cut(s) 420
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 1125
Tru1I TTAA 3 cut(s) 846, 999, 1067
Tru9I TTAA 3 cut(s) 846, 999, 1067
TscAI CASTG 4 cut(s) 58, 439, 777, 831
TseI GCWGC 1 cut(s) 303
TspDTI ATGAA 8 cut(s) 17, 263, 549, 570, 816, 1028, 1033, 1075
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 4 cut(s) 58, 439, 777, 831
VpaK11BI GGWCC 1 cut(s) 901
XapI RAATTY 6 cut(s) 130, 139, 632, 803, 842, 1183
XceI RCATGY 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 888
XmiI GTMKAC 2 cut(s) 858, 960
XmnI GAANNNNTTC 2 cut(s) 8, 807
XspI CTAG 2 cut(s) 497, 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.