RchiOBHm_Chr3g0450711

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000230
Physical Location & Seq
Forward (+)
2129548 .. 2131062
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41803

Sequence Viewer

Length: 1515 bp
ATGCCTGCAAATCATTCTTCTCTCATTACCAATCTCTTGCCTAAAATAATGGCACCTACAAACCCTAATAGTACCTTTTGTCATTTACGCAAGTATTATTATAGTATGGTGGTCATCACTATTTTTTCCATTGATCTTGTATGTTTTTCTTATGCCGCAGCAGCAGATATCAACAATTATAATGGTGGATTCAGTGCTCATCTTATCCGAAGAAACTCTCCAAATTCACTCTTGTACAATCACAAAAGGAACAAAAGTTTCCGACGTTTGATGGGTCCAGAAACGCCGCAATCAACACTAGTAACCGATCCAGATGGTAGCGAACATCTTATGAAATTGTCAATAGGAACTCCGCCTTTCGATATCTATGTAATTGCTGATACAGGCAGCACCCTACTATGGACTCAATGCCAGCCATGTAAAAATTGCTTCAAGACGAAACATGCCATATTTAACCCGAAAGAATCCTCAACTTATAGGAACATTACTTGTTCTGAAAGTGAGTGTAGACTTGTTGACGAGTTCTCACCTCGAAACCATTGCAAAATAAATCCTCAAGCTGCTTGCATGTATGATTCAACGTATGCAGATGAGTCATACTCTAAAGGTACAGTGGCTAAAGAAGCAATTACCTTGAAGTCCACGTCAGGTAAGGTTGTAACCCTAAAAGATATTGTCATTGGGTGTGGGCAAAACAACAGTGGTATAGAGGCAAGTGAGAATGAAATGGGAATAATAGGGCTTGGACGCGGGCCCTTGTCATTTGCTTCTCAAATCAGTCCCCATGTTGGAGGCAAAAAATTCTCTTATTGCTTTGTGCCTGTTAGTACTGATCCCAAAATCGAAAGTACTATTAATTTCGGGAATGGGAGTGAAGTTTCGGGTGAAGGGGTGGTGTCAACACCTTTGATCGATGTAGAATCGGACATGGATAGTTATCTTGTGACGATGAAAGGAATTACAATTGGAAATGATTTTATTCCTTTTAACTCAACAGGGACAATGCTTGAGAAAGGTAACACGTTGATCGACTCAGGCACAGCTTTATCATATTTACCTCAAGATTTTTATGAACGGGTGGTGAATCAGCTGGTAAACAAACTTGATCCGAATTTGGAGGTAATCAATTATATTGACGAAGATAATTCAAGTAGCATATGCTTCAACACGACAACGCTTCCAAAAGCACCAAATATGGCTGTGCATTTTGACGATGGTGGAAAATTACAATTAACGGCGGAACATATATTTAGAGACGAAGAGAAAAAATTAGTCTGCCTTGGACTAAAGAACTCTAGTAAGCAGGGCTTCTCTAGTGACGATATTGGTGTTCTCGGAAATAATGTTCAAGAAAATTTCTTGATTGGTTTTGACTTGGATAAAAAATGGGTCTCCTTCAAGCCTACTAATTGCATAAAGATGGCTGCTGCTAGTGGTGCTAATATTGCTACTCATGTCTTTTCCATTTTCTCTACTTGCCTTTTGTATTTGTTTTTGATTGTGAAATCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

504

Amino Acids

55.36

Weight (kDa)

6.02

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 110 - 289 1.7e-48 Xylanase inhibitor N-terminal
Asp PF00026 110 - 161 5.8e-08 Eukaryotic aspartyl protease
Asp PF00026 163 - 466 5.3e-10 Eukaryotic aspartyl protease
TAXi_C PF14541 313 - 467 6.5e-24 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 508
AccII CGCG 1 cut(s) 750
AciI CCGC 5 cut(s) 156, 287, 353, 750, 1238
AclWI GGATC 3 cut(s) 302, 827, 1100
AcsI RAATTY 4 cut(s) 223, 800, 1111, 1354
AfaI GTAC 5 cut(s) 73, 236, 610, 829, 850
AfiI CCNNNNNNNGG 2 cut(s) 399, 788
AflIII ACRYGT 1 cut(s) 1020
AgsI TTSAA 7 cut(s) 433, 579, 637, 1149, 1165, 1349, 1399
AhlI ACTAGT 1 cut(s) 298
AjiI CACGTC 1 cut(s) 645
AloI GAACNNNNNNTCC 2 cut(s) 1329, 1361
AluBI AGCT 3 cut(s) 560, 1043, 1090
AluI AGCT 3 cut(s) 560, 1043, 1090
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 1248, 1396
AlwI GGATC 3 cut(s) 302, 827, 1100
AoxI GGCC 1 cut(s) 752
ApaI GGGCCC 1 cut(s) 756
ApeKI GCWGC 6 cut(s) 158, 161, 387, 560, 1424, 1427
ApoI RAATTY 4 cut(s) 223, 800, 1111, 1354
AseI ATTAAT 1 cut(s) 855
AspS9I GGNCC 3 cut(s) 275, 752, 753
AsuHPI GGTGA 3 cut(s) 519, 896, 1093
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 756
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 6 cut(s) 170, 173, 399, 547, 1411, 1414
BccI CCATC 4 cut(s) 265, 308, 1208, 1414
BceAI ACGGC 1 cut(s) 1251
BcgI CGANNNNNNTGC 2 cut(s) 522, 556
BcoDI GTCTC 2 cut(s) 1248, 1396
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 4 cut(s) 299, 1296, 1314, 1431
BisI GCNGC 8 cut(s) 156, 159, 162, 287, 388, 561, 1425, 1428
BlsI GCNGC 8 cut(s) 157, 160, 163, 288, 389, 562, 1426, 1429
BmcAI AGTACT 2 cut(s) 829, 850
Bme18I GGWCC 1 cut(s) 275
BmgBI CACGTC 1 cut(s) 645
BmgT120I GGNCC 3 cut(s) 275, 752, 753
BmiI GGNNCC 3 cut(s) 54, 276, 754
BplI GAGNNNNNCTC 2 cut(s) 584, 616
BpuEI CTTGAG 3 cut(s) 540, 1028, 1044
Bsa29I ATCGAT 1 cut(s) 912
BsaBI GATNNNNATC 1 cut(s) 936
BsaI GGTCTC 1 cut(s) 1396
BsaJI CCNNGG 1 cut(s) 1279
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 788
Bse3DI GCAATG 1 cut(s) 538
Bse8I GATNNNNATC 1 cut(s) 936
BseCI ATCGAT 1 cut(s) 912
BseDI CCNNGG 1 cut(s) 1279
BseJI GATNNNNATC 1 cut(s) 936
BseLI CCNNNNNNNGG 2 cut(s) 399, 788
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 1 cut(s) 1047
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 6 cut(s) 170, 173, 399, 547, 1411, 1414
Bsh1236I CGCG 1 cut(s) 750
BshFI GGCC 1 cut(s) 754
BshNI GGYRCC 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 912
BsiHKAI GWGCWC 1 cut(s) 199
BslFI GGGAC 2 cut(s) 765, 1012
BslI CCNNNNNNNGG 2 cut(s) 399, 788
BsmAI GTCTC 2 cut(s) 1248, 1396
BsmBI CGTCTC 1 cut(s) 1248
BsmFI GGGAC 2 cut(s) 765, 1012
BsnI GGCC 1 cut(s) 754
Bso31I GGTCTC 1 cut(s) 1396
Bsp120I GGGCCC 1 cut(s) 752
Bsp1286I GDGCHC 2 cut(s) 199, 756
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 6 cut(s) 133, 307, 832, 909, 1026, 1105
BspACI CCGC 5 cut(s) 156, 287, 353, 750, 1238
BspANI GGCC 1 cut(s) 754
BspCNI CTCAG 1 cut(s) 1046
BspDI ATCGAT 1 cut(s) 912
BspFNI CGCG 1 cut(s) 750
BspLI GGNNCC 3 cut(s) 54, 276, 754
BspPI GGATC 3 cut(s) 302, 827, 1100
BspT107I GGYRCC 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 1396
BsrDI GCAATG 1 cut(s) 538
BsrGI TGTACA 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 1279
BssMI GATC 6 cut(s) 133, 307, 832, 909, 1026, 1105
BssT1I CCWWGG 1 cut(s) 1279
Bst4CI ACNGT 2 cut(s) 613, 701
Bst6I CTCTTC 1 cut(s) 1254
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 4 cut(s) 6, 413, 565, 752
BstDEI CTNAG 1 cut(s) 1033
BstFNI CGCG 1 cut(s) 750
BstKTI GATC 6 cut(s) 136, 310, 835, 912, 1029, 1108
BstMAI GTCTC 2 cut(s) 1248, 1396
BstMBI GATC 6 cut(s) 133, 307, 832, 909, 1026, 1105
BstMWI GCNNNNNNNGC 4 cut(s) 161, 623, 1436, 1445
BstNSI RCATGY 2 cut(s) 446, 571
BstSLI GKGCMC 1 cut(s) 756
BstUI CGCG 1 cut(s) 750
BstV1I GCAGC 6 cut(s) 170, 173, 399, 547, 1411, 1414
Bsu15I ATCGAT 1 cut(s) 912
BsuRI GGCC 1 cut(s) 754
BsuTUI ATCGAT 1 cut(s) 912
BtrI CACGTC 1 cut(s) 645
BtsIMutI CAGTG 3 cut(s) 199, 618, 706
Cac8I GCNNGC 4 cut(s) 6, 413, 565, 752
Cfr13I GGNCC 3 cut(s) 275, 752, 753
ClaI ATCGAT 1 cut(s) 912
CseI GACGC 1 cut(s) 756
Csp6I GTAC 5 cut(s) 72, 235, 609, 828, 849
CviAII CATG 6 cut(s) 417, 443, 568, 785, 928, 1454
CviQI GTAC 5 cut(s) 72, 235, 609, 828, 849
DdeI CTNAG 1 cut(s) 1033
DpnI GATC 6 cut(s) 135, 309, 834, 911, 1028, 1107
DpnII GATC 6 cut(s) 133, 307, 832, 909, 1026, 1105
Eam1104I CTCTTC 1 cut(s) 1254
EarI CTCTTC 1 cut(s) 1254
EciI GGCGGA 2 cut(s) 342, 1253
Eco130I CCWWGG 1 cut(s) 1279
Eco24I GRGCYC 1 cut(s) 756
Eco31I GGTCTC 1 cut(s) 1396
Eco32I GATATC 2 cut(s) 169, 364
Eco47I GGWCC 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 753
EcoRV GATATC 2 cut(s) 169, 364
EcoT14I CCWWGG 1 cut(s) 1279
EcoT38I GRGCYC 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 1279
Esp3I CGTCTC 1 cut(s) 1248
FaeI CATG 6 cut(s) 420, 446, 571, 788, 931, 1457
FalI AAGNNNNNCTT 2 cut(s) 1292, 1324
FaqI GGGAC 2 cut(s) 765, 1012
FatI CATG 6 cut(s) 416, 442, 567, 784, 927, 1453
FauI CCCGC 1 cut(s) 743
FauNDI CATATG 1 cut(s) 1157
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 8 cut(s) 156, 159, 162, 287, 388, 561, 1425, 1428
FriOI GRGCYC 1 cut(s) 756
Fsp4HI GCNGC 8 cut(s) 156, 159, 162, 287, 388, 561, 1425, 1428
FspBI CTAG 4 cut(s) 299, 1296, 1314, 1431
GluI GCNGC 8 cut(s) 156, 159, 162, 287, 388, 561, 1425, 1428
HaeIII GGCC 1 cut(s) 754
HgaI GACGC 1 cut(s) 756
Hin1II CATG 6 cut(s) 420, 446, 571, 788, 931, 1457
HincII GTYRAC 2 cut(s) 517, 900
HindII GTYRAC 2 cut(s) 517, 900
HinfI GANTC 8 cut(s) 189, 403, 464, 575, 593, 920, 1031, 1084
HphI GGTGA 3 cut(s) 519, 896, 1093
Hpy166II GTNNAC 5 cut(s) 509, 517, 642, 900, 1096
Hpy188I TCNGA 6 cut(s) 209, 263, 496, 925, 1110, 1337
Hpy188III TCNNGA 7 cut(s) 278, 311, 433, 862, 1061, 1349, 1360
Hpy8I GTNNAC 5 cut(s) 509, 517, 642, 900, 1096
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 2 cut(s) 881, 1405
HpyCH4III ACNGT 2 cut(s) 613, 701
HpyCH4IV ACGT 4 cut(s) 265, 581, 644, 1022
HpyCH4V TGCA 6 cut(s) 8, 543, 567, 587, 1204, 1413
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 623, 1436, 1445
HpyF3I CTNAG 1 cut(s) 1033
HpySE526I ACGT 4 cut(s) 265, 581, 644, 1022
Hsp92II CATG 6 cut(s) 420, 446, 571, 788, 931, 1457
Kzo9I GATC 6 cut(s) 133, 307, 832, 909, 1026, 1105
Lsp1109I GCAGC 6 cut(s) 170, 173, 399, 547, 1411, 1414
MaeI CTAG 4 cut(s) 299, 1296, 1314, 1431
MaeII ACGT 4 cut(s) 265, 581, 644, 1022
MaeIII GTNAC 5 cut(s) 301, 658, 943, 1016, 1316
MalI GATC 6 cut(s) 135, 309, 834, 911, 1028, 1107
MboI GATC 6 cut(s) 133, 307, 832, 909, 1026, 1105
MboII GAAGA 4 cut(s) 9, 222, 1151, 1271
MfeI CAATTG 1 cut(s) 963
MhlI GDGCHC 2 cut(s) 199, 756
MlyI GAGTC 3 cut(s) 397, 602, 1025
MmeI TCCRAC 2 cut(s) 286, 769
MnlI CCTC 7 cut(s) 478, 540, 564, 703, 785, 1068, 1111
MseI TTAA 4 cut(s) 453, 855, 987, 1232
MslI CAYNNNNRTG 1 cut(s) 1418
MspA1I CMGCKG 1 cut(s) 1090
MunI CAATTG 1 cut(s) 963
MvnI CGCG 1 cut(s) 750
MwoI GCNNNNNNNGC 4 cut(s) 161, 623, 1436, 1445
NdeI CATATG 1 cut(s) 1157
NdeII GATC 6 cut(s) 133, 307, 832, 909, 1026, 1105
NlaIII CATG 6 cut(s) 420, 446, 571, 788, 931, 1457
NlaIV GGNNCC 3 cut(s) 54, 276, 754
NmuCI GTSAC 2 cut(s) 943, 1316
NspI RCATGY 2 cut(s) 446, 571
PfeI GAWTC 5 cut(s) 189, 464, 575, 920, 1084
PkrI GCNGC 8 cut(s) 157, 160, 163, 288, 389, 562, 1426, 1429
PleI GAGTC 3 cut(s) 397, 601, 1025
PpsI GAGTC 3 cut(s) 397, 601, 1025
PshBI ATTAAT 1 cut(s) 855
PsiI TTATAA 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 54, 276, 754
PspOMI GGGCCC 1 cut(s) 752
PspPI GGNCC 3 cut(s) 275, 752, 753
PvuII CAGCTG 1 cut(s) 1090
RsaI GTAC 5 cut(s) 73, 236, 610, 829, 850
RsaNI GTAC 5 cut(s) 72, 235, 609, 828, 849
RseI CAYNNNNRTG 1 cut(s) 1418
SaqAI TTAA 4 cut(s) 453, 855, 987, 1232
SatI GCNGC 8 cut(s) 156, 159, 162, 287, 388, 561, 1425, 1428
Sau3AI GATC 6 cut(s) 133, 307, 832, 909, 1026, 1105
Sau96I GGNCC 3 cut(s) 275, 752, 753
ScaI AGTACT 2 cut(s) 829, 850
SchI GAGTC 3 cut(s) 397, 602, 1025
SduI GDGCHC 2 cut(s) 199, 756
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 1418
SmlI CTYRAG 3 cut(s) 555, 1007, 1059
SmoI CTYRAG 3 cut(s) 555, 1007, 1059
SpeI ACTAGT 1 cut(s) 298
SsiI CCGC 5 cut(s) 156, 287, 353, 750, 1238
SspI AATATT 1 cut(s) 1444
SspMI CTAG 4 cut(s) 299, 1296, 1314, 1431
StyI CCWWGG 1 cut(s) 1279
TaaI ACNGT 2 cut(s) 613, 701
TaiI ACGT 4 cut(s) 268, 584, 647, 1025
TaqI TCGA 5 cut(s) 360, 532, 843, 912, 1029
TatI WGTACW 3 cut(s) 234, 827, 848
TauI GCSGC 2 cut(s) 158, 289
TfiI GAWTC 5 cut(s) 189, 464, 575, 920, 1084
Tru1I TTAA 4 cut(s) 453, 855, 987, 1232
Tru9I TTAA 4 cut(s) 453, 855, 987, 1232
TscAI CASTG 3 cut(s) 199, 618, 706
TseFI GTSAC 2 cut(s) 943, 1316
TseI GCWGC 6 cut(s) 158, 161, 387, 560, 1424, 1427
Tsp45I GTSAC 2 cut(s) 943, 1316
TspDTI ATGAA 4 cut(s) 347, 738, 965, 1086
TspRI CASTG 3 cut(s) 199, 618, 706
VpaK11BI GGWCC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 855
XapI RAATTY 4 cut(s) 223, 800, 1111, 1354
XceI RCATGY 2 cut(s) 446, 571
XmiI GTMKAC 1 cut(s) 508
XspI CTAG 4 cut(s) 299, 1296, 1314, 1431
ZrmI AGTACT 2 cut(s) 829, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.