Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000230

Physical Location & Seq

Genomic Coordinates Reverse (-)

18320314 .. 18328201

Gene Structure 7888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGCGACGCCATATCATTCACTCTCCGCCATTGCAAGTTCTGTTGTTATTCTCTTTCTCTTAGTTCGCTCTATTGCACAAGATAATGTTCCTCACCATGGTGGTGTTATTAGCCTCAACATGATCCATCGTGACACACCATCTTCTCCCTTATACAATTCGTCGTTAACTGATTGGCAACGAGCAAGCAATGCTTTGCGACGTTCACGCGATCGCATCAACCGTTTCACCTCATCAGAAGATGAATTGCCTGATCATCTAATGTACAGCGAAGGAGATTACTTGGTGAACATATCAATCGGTACACCGCCAAGACCTTTCATTGGAATTGTTGACACCGGAAGCGATCTTATATGGACACAATGCATGCCATGCAGGACCCTCCTCTCTTTGATCCAGCTTCTTCATCAACTTACAGAGCTCTTTCGTGTATCCTCCTTTTGTTCCAGTAATTCAAGCTCTTGTGACTATCAATATTCATATGTCGACGGGTCTAATACCACAGGAAACCTGTCCCTCAACACTGTTACGTTGGGTTCCACATCCATTCCTAAAACTATATTTGGTTGCGGACACCAAAATGGAGGAGATTTCAGTGGGATTGAGTCGGGAATTGTCGGACTAGGACGTGGAGCTGTGTCGTTTATCTCCCAAATAGGGGGGTATTTGGTTGGCGGGAAATATTTCTCTTATTGCTTGGTTCCTAATCCTGCAATGCCTTTCCTGTCTAATAACTCTAATGCAACCTCATCAAGCAAGATGTATTTTGGTCGACCGAATACTTCATCAGGTCCTGAAATGGTCACCACCCCTTTGCTTTCGAACGGTGTTAGCGCCACTCAAACCTTTTATATCGTTGAGCTTCAAGCCATTAGTGTTGGAGCCAACAATATCACACTTAATGCAGATGCCAAGGCCTTTAAGGGTAACATGATCATAGACTCGGGGACTACCTTAACGTACTTGCCGAAGTTGCTTTACGACAGTTTCAAATCAGCAATTGAAGAAGAACTTAAAGATCGAGATCTGGAGGTGAAGCAAGATCCGACTGGTTCTGGGCTGTCTTGTTTCTTGACTAAGTATGATATTCTTCCTGGCCCCAATGTCACTTTCCATTTTAAAGGGACAGATGTGAAGCTAAAATCTGCCAACACTTTTGTTAGGGTGGATGATGAGACTGTTTGCTTAGCATTCTCCCGAGGCAGCGGTGTCGGAACCTATGGGAATTGGGCACAGATAAACTTGTTGGTGCCAATTTCGGCATCAACGAGTCAACGGAGGTTCCGATATGACCTTGAGAACAAGACTGTCTCCTTCCAGCCAACTGATTGTACAACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

447

Amino Acids

48.59

Weight (kDa)

6.07

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	94 - 257	2.1e-34	Xylanase inhibitor N-terminal
Asp	PF00026	94 - 396	3.1e-22	Eukaryotic aspartyl protease
TAXi_C	PF14541	284 - 440	2.3e-20	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica	MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica	Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis	pycom12g22170
rosa_chinensis	RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata	RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora	Rmu_sc0034928.1_g000007
rosa_roxburghii	Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa	Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha	Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana	Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1249
AccI	GTMKAC	2 cut(s)	486, 772
AccII	CGCG	1 cut(s)	210
AciI	CCGC	5 cut(s)	27, 308, 570, 675, 1206
AclWI	GGATC	3 cut(s)	118, 388, 1037
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	4 cut(s)	266, 304, 962, 1333
AfiI	CCNNNNNNNGG	4 cut(s)	98, 323, 657, 658
AgsI	TTSAA	4 cut(s)	456, 866, 991, 1004
AjiI	CACGTC	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	1093
AjuI	GAANNNNNNNTTGG	2 cut(s)	1094, 1126
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	7 cut(s)	400, 421, 459, 635, 862, 1138, 1341
AluI	AGCT	7 cut(s)	400, 421, 459, 635, 862, 1138, 1341
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	2 cut(s)	1169, 1315
AlwI	GGATC	3 cut(s)	118, 388, 1037
AlwNI	CAGNNNCTG	1 cut(s)	794
Ama87I	CYCGRG	2 cut(s)	943, 1197
AoxI	GGCC	2 cut(s)	915, 1096
ApeKI	GCWGC	1 cut(s)	1203
AsiSI	GCGATCGC	1 cut(s)	214
Asp700I	GAANNNNTTC	1 cut(s)	683
AspLEI	GCGC	1 cut(s)	836
AspS9I	GGNCC	3 cut(s)	378, 791, 1097
AsuHPI	GGTGA	5 cut(s)	86, 220, 298, 796, 1045
AsuII	TTCGAA	1 cut(s)	821
AvaI	CYCGRG	2 cut(s)	943, 1197
AvaII	GGWCC	2 cut(s)	378, 791
BaeGI	GKGCMC	1 cut(s)	1234
BanI	GGYRCC	1 cut(s)	1249
BanII	GRGCYC	1 cut(s)	423
BarI	GAAGNNNNNNTAC	2 cut(s)	962, 994
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	1215
BccI	CCATC	2 cut(s)	135, 148
BcgI	CGANNNNNNTGC	2 cut(s)	1192, 1226
BciT130I	CCWGG	1 cut(s)	1095
BciVI	GTATCC	1 cut(s)	442
BclI	TGATCA	2 cut(s)	253, 933
BcoDI	GTCTC	2 cut(s)	1169, 1315
BfaI	CTAG	3 cut(s)	623, 1338, 1342
BfoI	RGCGCY	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	1 cut(s)	1204
BlpI	GCTNAGC	1 cut(s)	1186
BlsI	GCNGC	1 cut(s)	1205
Bme1390I	CCNGG	1 cut(s)	1095
Bme18I	GGWCC	2 cut(s)	378, 791
BmeT110I	CYCGRG	2 cut(s)	943, 1197
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	3 cut(s)	378, 791, 1097
BmiI	GGNNCC	8 cut(s)	380, 538, 702, 883, 1099, 1216, 1251, 1283
BmrFI	CCNGG	1 cut(s)	1095
BmsI	GCATC	3 cut(s)	225, 898, 1271
BpmI	CTGGAG	1 cut(s)	1049
Bpu1102I	GCTNAGC	1 cut(s)	1186
Bpu14I	TTCGAA	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	1316
BsaBI	GATNNNNATC	1 cut(s)	1023
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	97, 912, 1198
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 323, 657, 658
Bse1I	ACTGG	2 cut(s)	447, 1054
Bse3DI	GCAATG	3 cut(s)	30, 196, 720
Bse8I	GATNNNNATC	1 cut(s)	1023
BseBI	CCWGG	1 cut(s)	1095
BseDI	CCNNGG	3 cut(s)	97, 912, 1198
BseGI	GGATG	2 cut(s)	542, 1174
BseJI	GATNNNNATC	1 cut(s)	1023
BseLI	CCNNNNNNNGG	4 cut(s)	98, 323, 657, 658
BseMI	GCAATG	3 cut(s)	30, 196, 720
BseNI	ACTGG	2 cut(s)	447, 1054
BseRI	GAGGAG	2 cut(s)	374, 600
BseSI	GKGCMC	1 cut(s)	1234
BseXI	GCAGC	1 cut(s)	1215
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	2 cut(s)	214, 776
BshFI	GGCC	2 cut(s)	917, 1098
BshNI	GGYRCC	1 cut(s)	1249
BsiEI	CGRYCG	2 cut(s)	214, 776
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	2 cut(s)	943, 1197
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	3 cut(s)	499, 961, 1138
BslI	CCNNNNNNNGG	4 cut(s)	98, 323, 657, 658
BsmAI	GTCTC	2 cut(s)	1169, 1315
BsmFI	GGGAC	3 cut(s)	499, 961, 1138
BsmI	GAATGC	1 cut(s)	1190
BsnI	GGCC	2 cut(s)	917, 1098
BsoBI	CYCGRG	2 cut(s)	943, 1197
Bsp119I	TTCGAA	1 cut(s)	821
Bsp1286I	GDGCHC	2 cut(s)	423, 1234
Bsp1407I	TGTACA	2 cut(s)	264, 1331
Bsp143I	GATC	9 cut(s)	123, 211, 253, 346, 393, 933, 1018, 1024, 1042
Bsp1720I	GCTNAGC	1 cut(s)	1186
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	5 cut(s)	27, 308, 570, 675, 1206
BspANI	GGCC	2 cut(s)	917, 1098
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	8 cut(s)	380, 538, 702, 883, 1099, 1216, 1251, 1283
BspPI	GGATC	3 cut(s)	118, 388, 1037
BspT104I	TTCGAA	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	1249
BsrDI	GCAATG	3 cut(s)	30, 196, 720
BsrGI	TGTACA	2 cut(s)	264, 1331
BsrI	ACTGG	2 cut(s)	447, 1054
BssECI	CCNNGG	3 cut(s)	97, 912, 1198
BssMI	GATC	9 cut(s)	123, 211, 253, 346, 393, 933, 1018, 1024, 1042
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	2 cut(s)	97, 912
Bst2UI	CCWGG	1 cut(s)	1095
Bst4CI	ACNGT	6 cut(s)	224, 526, 827, 986, 1180, 1309
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	2 cut(s)	191, 372
BstAUI	TGTACA	2 cut(s)	264, 1331
BstBI	TTCGAA	1 cut(s)	821
BstC8I	GCNNGC	2 cut(s)	187, 368
BstDEI	CTNAG	3 cut(s)	61, 1077, 1186
BstDSI	CCRYGG	1 cut(s)	97
BstEII	GGTNACC	1 cut(s)	802
BstF5I	GGATG	2 cut(s)	542, 1174
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	837
BstHHI	GCGC	1 cut(s)	836
BstKTI	GATC	9 cut(s)	126, 214, 256, 349, 396, 936, 1021, 1027, 1045
BstMAI	GTCTC	2 cut(s)	1169, 1315
BstMBI	GATC	9 cut(s)	123, 211, 253, 346, 393, 933, 1018, 1024, 1042
BstMCI	CGRYCG	2 cut(s)	214, 776
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 372, 973
BstNI	CCWGG	1 cut(s)	1095
BstNSI	RCATGY	1 cut(s)	370
BstPI	GGTNACC	1 cut(s)	802
BstSCI	CCNGG	1 cut(s)	1093
BstSLI	GKGCMC	1 cut(s)	1234
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	1215
BstX2I	RGATCY	2 cut(s)	1024, 1042
BstYI	RGATCY	2 cut(s)	1024, 1042
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	917, 1098
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	542, 1174
BtsIMutI	CAGTG	2 cut(s)	522, 601
Cac8I	GCNNGC	2 cut(s)	187, 368
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	1 cut(s)	836
Cfr13I	GGNCC	3 cut(s)	378, 791, 1097
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	4 cut(s)	265, 303, 961, 1332
CviAII	CATG	5 cut(s)	98, 121, 367, 372, 931
CviQI	GTAC	4 cut(s)	265, 303, 961, 1332
DdeI	CTNAG	3 cut(s)	61, 1077, 1186
DpnI	GATC	9 cut(s)	125, 213, 255, 348, 395, 935, 1020, 1026, 1044
DpnII	GATC	9 cut(s)	123, 211, 253, 346, 393, 933, 1018, 1024, 1042
DraI	TTTAAA	1 cut(s)	1120
EciI	GGCGGA	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	97, 912
Eco147I	AGGCCT	1 cut(s)	917
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	378, 791
Eco53kI	GAGCTC	1 cut(s)	421
Eco88I	CYCGRG	2 cut(s)	943, 1197
Eco91I	GGTNACC	1 cut(s)	802
EcoICRI	GAGCTC	1 cut(s)	421
EcoO109I	RGGNCCY	2 cut(s)	378, 791
EcoO65I	GGTNACC	1 cut(s)	802
EcoRII	CCWGG	1 cut(s)	1093
EcoT14I	CCWWGG	2 cut(s)	97, 912
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	2 cut(s)	97, 912
FaeI	CATG	5 cut(s)	101, 124, 370, 375, 934
FalI	AAGNNNNNCTT	4 cut(s)	178, 210, 996, 1028
FaqI	GGGAC	3 cut(s)	499, 961, 1138
FatI	CATG	5 cut(s)	97, 120, 366, 371, 930
FauI	CCCGC	1 cut(s)	668
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	2 cut(s)	253, 933
FblI	GTMKAC	2 cut(s)	486, 772
Fnu4HI	GCNGC	1 cut(s)	1204
FokI	GGATG	2 cut(s)	529, 1181
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	1204
FspBI	CTAG	3 cut(s)	623, 1338, 1342
GlaI	GCGC	1 cut(s)	835
GluI	GCNGC	1 cut(s)	1204
GsuI	CTGGAG	1 cut(s)	1049
HaeII	RGCGCY	1 cut(s)	837
HaeIII	GGCC	2 cut(s)	917, 1098
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	836
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	5 cut(s)	101, 124, 370, 375, 934
Hin6I	GCGC	1 cut(s)	834
HinP1I	GCGC	1 cut(s)	834
HincII	GTYRAC	5 cut(s)	168, 334, 487, 773, 1274
HindII	GTYRAC	5 cut(s)	168, 334, 487, 773, 1274
HinfI	GANTC	3 cut(s)	605, 941, 1270
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	5 cut(s)	86, 220, 298, 796, 1045
Hpy166II	GTNNAC	8 cut(s)	168, 206, 289, 305, 334, 487, 773, 1274
Hpy188I	TCNGA	5 cut(s)	238, 620, 1047, 1214, 1286
Hpy188III	TCNNGA	7 cut(s)	131, 609, 794, 1022, 1028, 1072, 1197
Hpy8I	GTNNAC	8 cut(s)	168, 206, 289, 305, 334, 487, 773, 1274
Hpy99I	CGWCG	4 cut(s)	10, 166, 204, 491
HpyAV	CCTTC	2 cut(s)	266, 1324
HpyCH4III	ACNGT	6 cut(s)	224, 526, 827, 986, 1180, 1309
HpyCH4IV	ACGT	4 cut(s)	202, 530, 628, 959
HpyCH4V	TGCA	7 cut(s)	35, 77, 366, 375, 713, 743, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 372, 973
HpyF3I	CTNAG	3 cut(s)	61, 1077, 1186
HpySE526I	ACGT	4 cut(s)	202, 530, 628, 959
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	5 cut(s)	101, 124, 370, 375, 934
HspAI	GCGC	1 cut(s)	834
Ksp22I	TGATCA	2 cut(s)	253, 933
KspAI	GTTAAC	1 cut(s)	168
Kzo9I	GATC	9 cut(s)	123, 211, 253, 346, 393, 933, 1018, 1024, 1042
LmnI	GCTCC	2 cut(s)	632, 881
Lsp1109I	GCAGC	1 cut(s)	1215
LweI	GCATC	3 cut(s)	225, 898, 1271
MaeI	CTAG	3 cut(s)	623, 1338, 1342
MaeII	ACGT	4 cut(s)	202, 530, 628, 959
MaeIII	GTNAC	6 cut(s)	131, 464, 526, 802, 926, 1105
MalI	GATC	9 cut(s)	125, 213, 255, 348, 395, 935, 1020, 1026, 1044
MboI	GATC	9 cut(s)	123, 211, 253, 346, 393, 933, 1018, 1024, 1042
MboII	GAAGA	6 cut(s)	135, 251, 395, 1016, 1019, 1082
MfeI	CAATTG	1 cut(s)	999
MflI	RGATCY	2 cut(s)	1024, 1042
MhlI	GDGCHC	2 cut(s)	423, 1234
MluCI	AATT	8 cut(s)	157, 245, 327, 451, 612, 999, 1225, 1254
MlyI	GAGTC	3 cut(s)	614, 935, 1279
MmeI	TCCRAC	4 cut(s)	598, 859, 1070, 1192
Mph1103I	ATGCAT	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	683
MseI	TTAA	6 cut(s)	167, 900, 921, 956, 1014, 1119
MslI	CAYNNNNRTG	3 cut(s)	99, 102, 579
MspA1I	CMGCKG	1 cut(s)	1206
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	1095
MunI	CAATTG	1 cut(s)	999
Mva1269I	GAATGC	1 cut(s)	1190
MvaI	CCWGG	1 cut(s)	1095
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	191, 372, 973
NcoI	CCATGG	1 cut(s)	97
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	9 cut(s)	123, 211, 253, 346, 393, 933, 1018, 1024, 1042
NlaIII	CATG	5 cut(s)	101, 124, 370, 375, 934
NlaIV	GGNNCC	8 cut(s)	380, 538, 702, 883, 1099, 1216, 1251, 1283
NmuCI	GTSAC	4 cut(s)	131, 464, 802, 1105
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	1 cut(s)	370
NspV	TTCGAA	1 cut(s)	821
OliI	CACNNNNGTG	1 cut(s)	99
PaeI	GCATGC	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	917
PcsI	WCGNNNNNNNCGW	4 cut(s)	220, 965, 1265, 1282
PctI	GAATGC	1 cut(s)	1190
PdmI	GAANNNNTTC	1 cut(s)	683
PkrI	GCNGC	1 cut(s)	1205
Ple19I	CGATCG	1 cut(s)	214
PleI	GAGTC	3 cut(s)	613, 935, 1278
PpsI	GAGTC	3 cut(s)	613, 935, 1278
PpuMI	RGGWCCY	2 cut(s)	378, 791
Psp124BI	GAGCTC	1 cut(s)	423
Psp5II	RGGWCCY	2 cut(s)	378, 791
Psp6I	CCWGG	1 cut(s)	1093
PspEI	GGTNACC	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	1093
PspN4I	GGNNCC	8 cut(s)	380, 538, 702, 883, 1099, 1216, 1251, 1283
PspPI	GGNCC	3 cut(s)	378, 791, 1097
PspPPI	RGGWCCY	2 cut(s)	378, 791
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	2 cut(s)	1024, 1042
PvuI	CGATCG	1 cut(s)	214
RgaI	GCGATCGC	1 cut(s)	214
RsaI	GTAC	4 cut(s)	266, 304, 962, 1333
RsaNI	GTAC	4 cut(s)	265, 303, 961, 1332
RseI	CAYNNNNRTG	3 cut(s)	99, 102, 579
SacI	GAGCTC	1 cut(s)	423
SalI	GTCGAC	2 cut(s)	485, 771
SaqAI	TTAA	6 cut(s)	167, 900, 921, 956, 1014, 1119
SatI	GCNGC	1 cut(s)	1204
Sau3AI	GATC	9 cut(s)	123, 211, 253, 346, 393, 933, 1018, 1024, 1042
Sau96I	GGNCC	3 cut(s)	378, 791, 1097
SchI	GAGTC	3 cut(s)	614, 935, 1279
ScrFI	CCNGG	1 cut(s)	1095
SduI	GDGCHC	2 cut(s)	423, 1234
SfaAI	GCGATCGC	1 cut(s)	214
SfaNI	GCATC	3 cut(s)	225, 898, 1271
SfuI	TTCGAA	1 cut(s)	821
SgfI	GCGATCGC	1 cut(s)	214
SinI	GGWCC	2 cut(s)	378, 791
SmiMI	CAYNNNNRTG	3 cut(s)	99, 102, 579
SmlI	CTYRAG	1 cut(s)	1295
SmoI	CTYRAG	1 cut(s)	1295
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	8 cut(s)	157, 245, 327, 451, 612, 999, 1225, 1254
SseBI	AGGCCT	1 cut(s)	917
SsiI	CCGC	5 cut(s)	27, 308, 570, 675, 1206
SspI	AATATT	2 cut(s)	476, 683
SspMI	CTAG	3 cut(s)	623, 1338, 1342
SstI	GAGCTC	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	917
StyD4I	CCNGG	1 cut(s)	1093
StyI	CCWWGG	2 cut(s)	97, 912
TaaI	ACNGT	6 cut(s)	224, 526, 827, 986, 1180, 1309
TaiI	ACGT	4 cut(s)	205, 533, 631, 962
TaqI	TCGA	4 cut(s)	486, 772, 821, 1021
TaqII	GACCGA	1 cut(s)	790
TasI	AATT	8 cut(s)	157, 245, 327, 451, 612, 999, 1225, 1254
TatI	WGTACW	2 cut(s)	264, 1331
Tru1I	TTAA	6 cut(s)	167, 900, 921, 956, 1014, 1119
Tru9I	TTAA	6 cut(s)	167, 900, 921, 956, 1014, 1119
TscAI	CASTG	2 cut(s)	529, 601
TseFI	GTSAC	4 cut(s)	131, 464, 802, 1105
TseI	GCWGC	1 cut(s)	1203
Tsp45I	GTSAC	4 cut(s)	131, 464, 802, 1105
TspDTI	ATGAA	5 cut(s)	258, 310, 395, 468, 774
TspGWI	ACGGA	1 cut(s)	1291
TspRI	CASTG	2 cut(s)	529, 601
VpaK11BI	GGWCC	2 cut(s)	378, 791
XceI	RCATGY	1 cut(s)	370
XmiI	GTMKAC	2 cut(s)	486, 772
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	3 cut(s)	623, 1338, 1342
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.