Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000230

Physical Location & Seq

Genomic Coordinates Forward (+)

37876842 .. 37878194

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGAGGACGCCATATCATTCACTCTCCGCCATTGCAAGTTCCATTGTTATTCTCTTTCTCTTAGTTCGCTCTCATGCACAAGATAATGTTCCTCACCATGGTGGTGTTATTAGCCTCAACATGATCCATCGTGACACACCATCTTCTCCCTTATACAATTCGTCGTTAACTAATTGGCAACGAGTAAACAATGCTTTGCGACGTTCACGTGATCGCATCAACCGTCTCACCTCATCAGAAGATGAATCGCCTGATCATCTAATGTACAGCGAAGGAGAGTACCTGGTGAACATATCAATCGGTACACCACCAAGACCTTTCATTGGAATTGTTGACACCGGAAGCGATCTTATATGGACGCAATGCATGCCATGCAGGCAATGTTTCAAGCAAAACCCTCCTCTCTTTGACCCAGCTTCTTCATCAACTTACAGAGCTCTTTCCTGTATGTCCAACGAATGTCGTTTGCTAAGCCCAACCTCCTTTTGTTCCAGTAATTCAAGCTCTTGTGACTATCAATATTCATATGTCGACGGGTCTAATACCACTGGAAACCTGTCCCTCGACACTGTTACGTTGGGTTCCACATCCATTCCCAAAACTATATTTGGTTGCGGACACCAAAATGGAGGAGATTTCAGTGGGATTGAGTCGGGAATTGTCGGACTAGGACGTGGAGCTGTGTCGTTTATCTCCCAAATAGGGGGGTATTTGGATGGCGGGAAATATTTCTCTTATTGCTTGGTTCCTAATCCCGCAATGTCTTTCCTGTCTAATAACTCTAATCCAATCTCATCAAGCAAGATGTATTTTGGTCGACTTAATACTTCATCCGGTCCTGAGGTGGTCACCACCCCTTTGCTTTCAACAGGTGATAGCGCCACTGAAACCTATATCCTTGAGCTTCAAGGCATTAGTGTTGGAGCCACCAATATCACGCTTAATGCAGATGCCAAGGCCTTTAAGGGTAACATGATCATAGACTCGGGGTCTACCTTAACGTACTTACCGGAGTTGCTTCACTACGGTTTCAAATCAGCAATTCAAGAAGAACTTAAAGATCGAGATCTGGAGGTGAAGCAAGATCCGACTGGCTCTGGGCTGTCTTGTTTCTTGACTAAATATGATATTCTTCCTGGCCCCAATGTCACTTTCCATTTTAATGGGGCATATGTGAAGCTAAAATCTGCCAACACTTTTGTTAGGGTGGATGATGAGACTGTTTGCTTAGCATTCTCCCGAGGCAGCGGTGTCGGAATCTATGGGAATTGGGCACATATAAACTACTTGGTAGGATATGACCTAGAGAACAAGACTGTCTCCTTCCAGCCAACTGATTGTACAACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

450

Amino Acids

48.89

Weight (kDa)

5.68

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	93 - 443	1.3e-23	Eukaryotic aspartyl protease
TAXi_N	PF14543	94 - 253	4e-50	Xylanase inhibitor N-terminal
TAXi_C	PF14541	298 - 443	1.2e-20	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica	MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica	Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis	pycom12g22170
rosa_chinensis	RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata	RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora	Rmu_sc0034928.1_g000007
rosa_roxburghii	Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa	Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha	Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana	Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	531, 817, 992
AciI	CCGC	5 cut(s)	27, 615, 720, 756, 1248
AclWI	GGATC	2 cut(s)	118, 1079
AcvI	CACGTG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	5 cut(s)	266, 281, 304, 1004, 1342
AfiI	CCNNNNNNNGG	4 cut(s)	98, 323, 702, 703
AgsI	TTSAA	6 cut(s)	388, 501, 867, 908, 1033, 1046
AhdI	GACNNNNNGTC	1 cut(s)	988
AjiI	CACGTC	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	282, 1135
AjuI	GAANNNNNNNTTGG	2 cut(s)	1136, 1168
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	7 cut(s)	416, 437, 504, 680, 904, 1180, 1350
AluI	AGCT	7 cut(s)	416, 437, 504, 680, 904, 1180, 1350
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	3 cut(s)	230, 1211, 1324
AlwI	GGATC	2 cut(s)	118, 1079
Ama87I	CYCGRG	2 cut(s)	985, 1239
AoxI	GGCC	2 cut(s)	957, 1138
ApeKI	GCWGC	1 cut(s)	1245
Asp700I	GAANNNNTTC	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	881
AspS9I	GGNCC	2 cut(s)	836, 1139
AsuHPI	GGTGA	6 cut(s)	86, 220, 298, 841, 884, 1087
AvaI	CYCGRG	2 cut(s)	985, 1239
AvaII	GGWCC	1 cut(s)	836
AxyI	CCTNAGG	1 cut(s)	840
BaeGI	GKGCMC	1 cut(s)	1276
BanII	GRGCYC	1 cut(s)	439
BbrPI	CACGTG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	1 cut(s)	1257
BccI	CCATC	3 cut(s)	135, 148, 710
BcgI	CGANNNNNNTGC	2 cut(s)	1234, 1268
BciT130I	CCWGG	2 cut(s)	284, 1137
BclI	TGATCA	2 cut(s)	253, 975
BcoDI	GTCTC	3 cut(s)	230, 1211, 1324
BfaI	CTAG	4 cut(s)	668, 1304, 1347, 1351
BfoI	RGCGCY	1 cut(s)	882
BglI	GCCNNNNNGGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	1066
BisI	GCNGC	1 cut(s)	1246
BlpI	GCTNAGC	2 cut(s)	470, 1228
BlsI	GCNGC	1 cut(s)	1247
Bme1390I	CCNGG	2 cut(s)	284, 1137
Bme18I	GGWCC	1 cut(s)	836
BmeRI	GACNNNNNGTC	1 cut(s)	988
BmeT110I	CYCGRG	2 cut(s)	985, 1239
BmgBI	CACGTC	1 cut(s)	674
BmgT120I	GGNCC	2 cut(s)	836, 1139
BmiI	GGNNCC	4 cut(s)	583, 747, 925, 1141
BmrFI	CCNGG	2 cut(s)	284, 1137
BmsI	GCATC	2 cut(s)	225, 940
BpmI	CTGGAG	1 cut(s)	1091
Bpu1102I	GCTNAGC	2 cut(s)	470, 1228
BpuEI	CTTGAG	1 cut(s)	920
BsaAI	YACGTR	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	97, 954, 1240
BsaWI	WCCGGW	3 cut(s)	338, 833, 1009
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 323, 702, 703
Bse1I	ACTGG	3 cut(s)	492, 553, 1096
Bse21I	CCTNAGG	1 cut(s)	840
Bse3DI	GCAATG	4 cut(s)	30, 368, 386, 765
Bse8I	GATNNNNATC	1 cut(s)	1065
BseBI	CCWGG	2 cut(s)	284, 1137
BseDI	CCNNGG	3 cut(s)	97, 954, 1240
BseGI	GGATG	4 cut(s)	587, 721, 830, 1216
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	4 cut(s)	98, 323, 702, 703
BseMI	GCAATG	4 cut(s)	30, 368, 386, 765
BseMII	CTCAG	1 cut(s)	831
BseNI	ACTGG	3 cut(s)	492, 553, 1096
BseRI	GAGGAG	2 cut(s)	390, 645
BseSI	GKGCMC	1 cut(s)	1276
BseXI	GCAGC	1 cut(s)	1257
BseYI	CCCAGC	1 cut(s)	412
BshFI	GGCC	2 cut(s)	959, 1140
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	2 cut(s)	985, 1239
BsiSI	CCGG	3 cut(s)	339, 834, 1010
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	4 cut(s)	98, 323, 702, 703
BsmAI	GTCTC	3 cut(s)	230, 1211, 1324
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	1232
BsnI	GGCC	2 cut(s)	959, 1140
BsoBI	CYCGRG	2 cut(s)	985, 1239
Bsp1286I	GDGCHC	2 cut(s)	439, 1276
Bsp1407I	TGTACA	2 cut(s)	264, 1340
Bsp143I	GATC	8 cut(s)	123, 211, 253, 346, 975, 1060, 1066, 1084
Bsp1720I	GCTNAGC	2 cut(s)	470, 1228
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	5 cut(s)	27, 615, 720, 756, 1248
BspANI	GGCC	2 cut(s)	959, 1140
BspCNI	CTCAG	1 cut(s)	832
BspLI	GGNNCC	4 cut(s)	583, 747, 925, 1141
BspPI	GGATC	2 cut(s)	118, 1079
BsrDI	GCAATG	4 cut(s)	30, 368, 386, 765
BsrGI	TGTACA	2 cut(s)	264, 1340
BsrI	ACTGG	3 cut(s)	492, 553, 1096
BssECI	CCNNGG	3 cut(s)	97, 954, 1240
BssMI	GATC	8 cut(s)	123, 211, 253, 346, 975, 1060, 1066, 1084
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	2 cut(s)	97, 954
Bst2UI	CCWGG	2 cut(s)	284, 1137
Bst4CI	ACNGT	5 cut(s)	224, 571, 1028, 1222, 1318
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	2 cut(s)	367, 372
BstAUI	TGTACA	2 cut(s)	264, 1340
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	368, 377
BstDEI	CTNAG	4 cut(s)	61, 470, 840, 1228
BstDSI	CCRYGG	1 cut(s)	97
BstEII	GGTNACC	1 cut(s)	847
BstF5I	GGATG	4 cut(s)	587, 721, 830, 1216
BstH2I	RGCGCY	1 cut(s)	882
BstHHI	GCGC	1 cut(s)	881
BstKTI	GATC	8 cut(s)	126, 214, 256, 349, 978, 1063, 1069, 1087
BstMAI	GTCTC	3 cut(s)	230, 1211, 1324
BstMBI	GATC	8 cut(s)	123, 211, 253, 346, 975, 1060, 1066, 1084
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 372, 376
BstNI	CCWGG	2 cut(s)	284, 1137
BstNSI	RCATGY	1 cut(s)	370
BstPI	GGTNACC	1 cut(s)	847
BstSCI	CCNGG	2 cut(s)	282, 1135
BstSLI	GKGCMC	1 cut(s)	1276
BstV1I	GCAGC	1 cut(s)	1257
BstX2I	RGATCY	2 cut(s)	1066, 1084
BstXI	CCANNNNNNTGG	1 cut(s)	1163
BstYI	RGATCY	2 cut(s)	1066, 1084
Bsu36I	CCTNAGG	1 cut(s)	840
BsuRI	GGCC	2 cut(s)	959, 1140
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	4 cut(s)	587, 721, 830, 1216
BtsIMutI	CAGTG	4 cut(s)	546, 567, 646, 882
Cac8I	GCNNGC	2 cut(s)	368, 377
CfoI	GCGC	1 cut(s)	881
Cfr13I	GGNCC	2 cut(s)	836, 1139
CseI	GACGC	2 cut(s)	16, 367
CsiI	ACCWGGT	1 cut(s)	282
Csp6I	GTAC	5 cut(s)	265, 280, 303, 1003, 1341
CviAII	CATG	6 cut(s)	74, 98, 121, 367, 372, 973
CviQI	GTAC	5 cut(s)	265, 280, 303, 1003, 1341
DdeI	CTNAG	4 cut(s)	61, 470, 840, 1228
DpnI	GATC	8 cut(s)	125, 213, 255, 348, 977, 1062, 1068, 1086
DpnII	GATC	8 cut(s)	123, 211, 253, 346, 975, 1060, 1066, 1084
DriI	GACNNNNNGTC	1 cut(s)	988
Eam1105I	GACNNNNNGTC	1 cut(s)	988
EciI	GGCGGA	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	437
Eco130I	CCWWGG	2 cut(s)	97, 954
Eco147I	AGGCCT	1 cut(s)	959
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	836
Eco53kI	GAGCTC	1 cut(s)	437
Eco72I	CACGTG	1 cut(s)	209
Eco81I	CCTNAGG	1 cut(s)	840
Eco88I	CYCGRG	2 cut(s)	985, 1239
Eco91I	GGTNACC	1 cut(s)	847
EcoICRI	GAGCTC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	282, 1135
EcoT14I	CCWWGG	2 cut(s)	97, 954
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	97, 954
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	6 cut(s)	77, 101, 124, 370, 375, 976
FalI	AAGNNNNNCTT	2 cut(s)	1038, 1070
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	6 cut(s)	73, 97, 120, 366, 371, 972
FauI	CCCGC	2 cut(s)	713, 763
FauNDI	CATATG	2 cut(s)	526, 1171
FbaI	TGATCA	2 cut(s)	253, 975
FblI	GTMKAC	3 cut(s)	531, 817, 992
Fnu4HI	GCNGC	1 cut(s)	1246
FokI	GGATG	4 cut(s)	574, 728, 817, 1223
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	1 cut(s)	1246
FspBI	CTAG	4 cut(s)	668, 1304, 1347, 1351
GlaI	GCGC	1 cut(s)	880
GluI	GCNGC	1 cut(s)	1246
GsaI	CCCAGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	1091
HaeII	RGCGCY	1 cut(s)	882
HaeIII	GGCC	2 cut(s)	959, 1140
HapII	CCGG	3 cut(s)	339, 834, 1010
HgaI	GACGC	2 cut(s)	16, 367
HhaI	GCGC	1 cut(s)	881
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	6 cut(s)	77, 101, 124, 370, 375, 976
Hin6I	GCGC	1 cut(s)	879
HinP1I	GCGC	1 cut(s)	879
HincII	GTYRAC	4 cut(s)	168, 334, 532, 818
HindII	GTYRAC	4 cut(s)	168, 334, 532, 818
HinfI	GANTC	4 cut(s)	245, 650, 983, 1257
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	3 cut(s)	339, 834, 1010
HphI	GGTGA	6 cut(s)	86, 220, 298, 841, 884, 1087
Hpy166II	GTNNAC	9 cut(s)	168, 187, 206, 289, 305, 334, 532, 818, 993
Hpy188I	TCNGA	4 cut(s)	238, 665, 1089, 1256
Hpy188III	TCNNGA	8 cut(s)	131, 654, 839, 1046, 1064, 1070, 1114, 1239
Hpy8I	GTNNAC	9 cut(s)	168, 187, 206, 289, 305, 334, 532, 818, 993
Hpy99I	CGWCG	3 cut(s)	166, 204, 536
HpyAV	CCTTC	2 cut(s)	266, 1333
HpyCH4III	ACNGT	5 cut(s)	224, 571, 1028, 1222, 1318
HpyCH4IV	ACGT	5 cut(s)	202, 208, 575, 673, 1001
HpyCH4V	TGCA	5 cut(s)	35, 77, 366, 375, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 372, 376
HpyF3I	CTNAG	4 cut(s)	61, 470, 840, 1228
HpySE526I	ACGT	5 cut(s)	202, 208, 575, 673, 1001
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	6 cut(s)	77, 101, 124, 370, 375, 976
HspAI	GCGC	1 cut(s)	879
Ksp22I	TGATCA	2 cut(s)	253, 975
KspAI	GTTAAC	1 cut(s)	168
Kzo9I	GATC	8 cut(s)	123, 211, 253, 346, 975, 1060, 1066, 1084
LmnI	GCTCC	2 cut(s)	677, 923
Lsp1109I	GCAGC	1 cut(s)	1257
LweI	GCATC	2 cut(s)	225, 940
MabI	ACCWGGT	1 cut(s)	282
MaeI	CTAG	4 cut(s)	668, 1304, 1347, 1351
MaeII	ACGT	5 cut(s)	202, 208, 575, 673, 1001
MaeIII	GTNAC	6 cut(s)	131, 509, 571, 847, 968, 1147
MalI	GATC	8 cut(s)	125, 213, 255, 348, 977, 1062, 1068, 1086
MboI	GATC	8 cut(s)	123, 211, 253, 346, 975, 1060, 1066, 1084
MboII	GAAGA	5 cut(s)	135, 251, 411, 1061, 1124
MflI	RGATCY	2 cut(s)	1066, 1084
MhlI	GDGCHC	2 cut(s)	439, 1276
MluCI	AATT	7 cut(s)	157, 172, 327, 496, 657, 1041, 1267
MlyI	GAGTC	2 cut(s)	659, 977
MmeI	TCCRAC	5 cut(s)	477, 643, 901, 1112, 1234
Mph1103I	ATGCAT	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	7 cut(s)	167, 822, 942, 963, 998, 1056, 1161
MslI	CAYNNNNRTG	4 cut(s)	99, 102, 624, 1161
MspA1I	CMGCKG	1 cut(s)	1248
MspI	CCGG	3 cut(s)	339, 834, 1010
MspR9I	CCNGG	2 cut(s)	284, 1137
Mva1269I	GAATGC	1 cut(s)	1232
MvaI	CCWGG	2 cut(s)	284, 1137
MwoI	GCNNNNNNNGC	3 cut(s)	367, 372, 376
NcoI	CCATGG	1 cut(s)	97
NdeI	CATATG	2 cut(s)	526, 1171
NdeII	GATC	8 cut(s)	123, 211, 253, 346, 975, 1060, 1066, 1084
NlaIII	CATG	6 cut(s)	77, 101, 124, 370, 375, 976
NlaIV	GGNNCC	4 cut(s)	583, 747, 925, 1141
NmuCI	GTSAC	4 cut(s)	131, 509, 847, 1147
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	1 cut(s)	370
OliI	CACNNNNGTG	1 cut(s)	99
PaeI	GCATGC	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	959
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	1 cut(s)	1232
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	245, 1257
PkrI	GCNGC	1 cut(s)	1247
PleI	GAGTC	2 cut(s)	658, 977
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
PpsI	GAGTC	2 cut(s)	658, 977
Ppu21I	YACGTR	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	282, 1135
PspCI	CACGTG	1 cut(s)	209
PspEI	GGTNACC	1 cut(s)	847
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	2 cut(s)	282, 1135
PspN4I	GGNNCC	4 cut(s)	583, 747, 925, 1141
PspPI	GGNCC	2 cut(s)	836, 1139
PsuI	RGATCY	2 cut(s)	1066, 1084
RsaI	GTAC	5 cut(s)	266, 281, 304, 1004, 1342
RsaNI	GTAC	5 cut(s)	265, 280, 303, 1003, 1341
RseI	CAYNNNNRTG	4 cut(s)	99, 102, 624, 1161
SacI	GAGCTC	1 cut(s)	439
SalI	GTCGAC	2 cut(s)	530, 816
SaqAI	TTAA	7 cut(s)	167, 822, 942, 963, 998, 1056, 1161
SatI	GCNGC	1 cut(s)	1246
Sau3AI	GATC	8 cut(s)	123, 211, 253, 346, 975, 1060, 1066, 1084
Sau96I	GGNCC	2 cut(s)	836, 1139
SchI	GAGTC	2 cut(s)	659, 977
ScrFI	CCNGG	2 cut(s)	284, 1137
SduI	GDGCHC	2 cut(s)	439, 1276
SexAI	ACCWGGT	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	225, 940
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	4 cut(s)	99, 102, 624, 1161
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	7 cut(s)	157, 172, 327, 496, 657, 1041, 1267
SseBI	AGGCCT	1 cut(s)	959
SsiI	CCGC	5 cut(s)	27, 615, 720, 756, 1248
SspI	AATATT	2 cut(s)	521, 728
SspMI	CTAG	4 cut(s)	668, 1304, 1347, 1351
SstI	GAGCTC	1 cut(s)	439
StuI	AGGCCT	1 cut(s)	959
StyD4I	CCNGG	2 cut(s)	282, 1135
StyI	CCWWGG	2 cut(s)	97, 954
TaaI	ACNGT	5 cut(s)	224, 571, 1028, 1222, 1318
TaiI	ACGT	5 cut(s)	205, 211, 578, 676, 1004
TaqI	TCGA	4 cut(s)	531, 564, 817, 1063
TasI	AATT	7 cut(s)	157, 172, 327, 496, 657, 1041, 1267
TatI	WGTACW	2 cut(s)	264, 1340
TfiI	GAWTC	2 cut(s)	245, 1257
Tru1I	TTAA	7 cut(s)	167, 822, 942, 963, 998, 1056, 1161
Tru9I	TTAA	7 cut(s)	167, 822, 942, 963, 998, 1056, 1161
TscAI	CASTG	4 cut(s)	553, 574, 646, 889
TseFI	GTSAC	4 cut(s)	131, 509, 847, 1147
TseI	GCWGC	1 cut(s)	1245
Tsp45I	GTSAC	4 cut(s)	131, 509, 847, 1147
TspDTI	ATGAA	5 cut(s)	258, 310, 411, 513, 819
TspRI	CASTG	4 cut(s)	553, 574, 646, 889
VpaK11BI	GGWCC	1 cut(s)	836
XceI	RCATGY	1 cut(s)	370
XmiI	GTMKAC	3 cut(s)	531, 817, 992
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	4 cut(s)	668, 1304, 1347, 1351
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.