RchiOBHm_Chr3g0450561

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000230
Physical Location & Seq
Forward (+)
2046093 .. 2048148
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41789

Sequence Viewer

Length: 912 bp
ATGAATGGTGGAAAGCTTGAGACGTTGGTCTTGGATCTTGAAAGCAAGGCTCCAAAGCTTCACGACACAAGAGAAAATCCTGAAGAAACTTGCGTGTACCATGCCGCGTATTCAAGCGGGCATAACTCGACCGGTCCATTCGCTAAAGAAACAGTTACCCTGACATCCACTACAGATAAGGTTGTAAACGTAGAGGATTATTTATTTGGGTGTGGGAATGAGAACAATTTCCACGGAAATAATTTGGGAGTTATTGGGCTTGGACGTGGCCCCTTGTCTTTAGTTTCTCAAATGGCTCCCTATGTTGGAGGAAAAAAATTCTCTCATTGCTTCATGGCAGATCCCAATATTGAAAGCAAGATCTATTTCGGGAACGGGAGTGAAGTTTTGGGTGAAGGGGTACTGACAGAACCTATGGCAGAACCAAATGAGGAACAATATAAATTGATAATATCAGGAATTACCATTGAAAATGACTTTGTTCCTTTTAACTCAACTGGGACAATGAACAAGAAAGCTAACATGCTGGTTGACTCAGGTACACCTCTGTCACGTTTACCACAAGACTTTTTTGACCGAGTGATAACTCAGCTAAACAACACAGTTAAATTAGAGTCATTCATGCAAAATGGAGGTGGATTAAGTAACATTTACTTCAATTACACGACGCTTCCAAAATTACCAACAGTGGCTTTAGAATTTGAGAGTGGTGGAAAATTGCAGTTGAATGAGAACCAATTATTTCAAATAGACGAAAAGCGCAAGGCGTTTTGCTTTATGATGATGAACAACACTTATAATTTTATGATTTTTGGAGGTACTCTTCAGACAGATTTCTTGATTGGTTTTGACCTAGATAGAAAAGTGGTATCTTTCAAGCCCACTAATTGCGCAAACTTCAATAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

303

Amino Acids

33.58

Weight (kDa)

5.13

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 21 - 125 1.4e-23 Xylanase inhibitor N-terminal
Asp PF00026 35 - 292 1.4e-11 Eukaryotic aspartyl protease
TAXi_C PF14541 146 - 293 3.2e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
Acc16I TGCGCA 1 cut(s) 892
AccII CGCG 1 cut(s) 107
AciI CCGC 2 cut(s) 105, 117
AclWI GGATC 2 cut(s) 42, 335
AcsI RAATTY 2 cut(s) 317, 698
AcuI CTGAAG 2 cut(s) 102, 809
AfaI GTAC 4 cut(s) 98, 402, 541, 820
AfiI CCNNNNNNNGG 1 cut(s) 305
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 9 cut(s) 41, 114, 353, 470, 658, 727, 746, 877, 901
AjiI CACGTC 1 cut(s) 266
AluBI AGCT 4 cut(s) 16, 58, 518, 592
AluI AGCT 4 cut(s) 16, 58, 518, 592
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 42, 335
AoxI GGCC 1 cut(s) 268
ApoI RAATTY 2 cut(s) 317, 698
AsiGI ACCGGT 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 2 cut(s) 762, 893
AspS9I GGNCC 2 cut(s) 134, 269
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 854
BfmI CTRYAG 1 cut(s) 171
BglII AGATCT 1 cut(s) 360
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 134, 269
BmiI GGNNCC 3 cut(s) 51, 271, 297
BmrI ACTGGG 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 507
BoxI GACNNNNGTC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 502
Bse3DI GCAATG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 2 cut(s) 549, 602
BseNI ACTGG 1 cut(s) 502
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 270
BshTI ACCGGT 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 34, 340, 360
BspACI CCGC 2 cut(s) 105, 117
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 2 cut(s) 548, 601
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 3 cut(s) 51, 271, 297
BspPI GGATC 2 cut(s) 42, 335
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 3 cut(s) 34, 340, 360
Bst4CI ACNGT 3 cut(s) 154, 604, 688
Bst6I CTCTTC 1 cut(s) 828
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 535, 588
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 164
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 2 cut(s) 762, 893
BstKTI GATC 3 cut(s) 37, 343, 363
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 34, 340, 360
BstMCI CGRYCG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 526
BstPAI GACNNNNGTC 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 171
BstUI CGCG 1 cut(s) 107
BstX2I RGATCY 3 cut(s) 34, 340, 360
BstYI RGATCY 3 cut(s) 34, 340, 360
BsuRI GGCC 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 232
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 2 cut(s) 762, 893
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 134, 269
CseI GACGC 1 cut(s) 676
Csp6I GTAC 4 cut(s) 97, 401, 540, 819
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 4 cut(s) 101, 334, 523, 622
CviQI GTAC 4 cut(s) 97, 401, 540, 819
DdeI CTNAG 2 cut(s) 535, 588
DpnI GATC 3 cut(s) 36, 342, 362
DpnII GATC 3 cut(s) 34, 340, 360
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 2 cut(s) 102, 809
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 4 cut(s) 104, 337, 526, 625
FaqI GGGAC 1 cut(s) 514
FatI CATG 4 cut(s) 100, 333, 522, 621
FauI CCCGC 1 cut(s) 110
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 854
FspI TGCGCA 1 cut(s) 892
GlaI GCGC 2 cut(s) 761, 892
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 676
HhaI GCGC 2 cut(s) 762, 893
Hin1II CATG 4 cut(s) 104, 337, 526, 625
Hin6I GCGC 2 cut(s) 760, 891
HinP1I GCGC 2 cut(s) 760, 891
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 2 cut(s) 14, 56
HinfI GANTC 2 cut(s) 533, 614
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 5 cut(s) 97, 187, 532, 542, 557
Hpy188I TCNGA 1 cut(s) 828
Hpy188III TCNNGA 6 cut(s) 38, 62, 80, 370, 456, 838
Hpy8I GTNNAC 5 cut(s) 97, 187, 532, 542, 557
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 3 cut(s) 154, 604, 688
HpyCH4IV ACGT 4 cut(s) 23, 189, 265, 553
HpyCH4V TGCA 2 cut(s) 625, 721
HpyF3I CTNAG 2 cut(s) 535, 588
HpySE526I ACGT 4 cut(s) 23, 189, 265, 553
Hsp92II CATG 4 cut(s) 104, 337, 526, 625
HspAI GCGC 2 cut(s) 760, 891
Kzo9I GATC 3 cut(s) 34, 340, 360
LmnI GCTCC 2 cut(s) 55, 301
LpnPI CCDG 7 cut(s) 93, 145, 173, 441, 483, 512, 522
MaeI CTAG 1 cut(s) 854
MaeII ACGT 4 cut(s) 23, 189, 265, 553
MaeIII GTNAC 3 cut(s) 154, 549, 644
MalI GATC 3 cut(s) 36, 342, 362
MboI GATC 3 cut(s) 34, 340, 360
MboII GAAGA 2 cut(s) 95, 815
MflI RGATCY 3 cut(s) 34, 340, 360
MlyI GAGTC 2 cut(s) 527, 623
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 6 cut(s) 187, 302, 424, 555, 626, 809
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 3 cut(s) 489, 606, 641
MspI CCGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 107
NdeII GATC 3 cut(s) 34, 340, 360
NlaIII CATG 4 cut(s) 104, 337, 526, 625
NlaIV GGNNCC 3 cut(s) 51, 271, 297
NmuCI GTSAC 1 cut(s) 549
NsbI TGCGCA 1 cut(s) 892
NspI RCATGY 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 227
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 2 cut(s) 527, 622
PpsI GAGTC 2 cut(s) 527, 622
PshAI GACNNNNGTC 1 cut(s) 26
PsiI TTATAA 1 cut(s) 798
PspN4I GGNNCC 3 cut(s) 51, 271, 297
PspPI GGNCC 2 cut(s) 134, 269
PsuI RGATCY 3 cut(s) 34, 340, 360
RsaI GTAC 4 cut(s) 98, 402, 541, 820
RsaNI GTAC 4 cut(s) 97, 401, 540, 819
SaqAI TTAA 3 cut(s) 489, 606, 641
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 34, 340, 360
Sau96I GGNCC 2 cut(s) 134, 269
SchI GAGTC 2 cut(s) 527, 623
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SsiI CCGC 2 cut(s) 105, 117
SspI AATATT 1 cut(s) 349
SspMI CTAG 1 cut(s) 854
TaaI ACNGT 3 cut(s) 154, 604, 688
TaiI ACGT 4 cut(s) 26, 192, 268, 556
TaqI TCGA 1 cut(s) 128
TaqII GACCGA 1 cut(s) 591
TauI GCSGC 1 cut(s) 107
Tru1I TTAA 3 cut(s) 489, 606, 641
Tru9I TTAA 3 cut(s) 489, 606, 641
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 1 cut(s) 549
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 5 cut(s) 17, 322, 521, 610, 800
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 693
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 2 cut(s) 317, 698
XceI RCATGY 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.