Rroxscaffold_6G00428220

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000230
Physical Location & Seq
Forward (+)
48696717 .. 48697850
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428220.1

Sequence Viewer

Length: 1134 bp
ATGGGTCCAGACACACCGGGATCACGAATGAAAATGGATCCGGGTAGTGGCGAACATATTATGAAGTTCTCAATGGGAACCCCACCCTTTGATATTTATGCAATTGTTGATACAGGTAGCGATCTACTATGGACACAATGCCAACCGTGTAAAGCGTGCTACAAGACCAACTTTGGCGTTTTTGACCCGAGAAAATCTTCAACTTATAGGAACATTAATTGTCGTGCAAGCGACTGTAGACTCGTCGCCCTTTCCAGACCATTGGACTATCAACCAAACTTTTGTAGAGAAAATCCTAAAGGACCTTGCTTGTACAGGTATGAGTATATGGACACGTCATCCTCGACTGGTGCATTGGCTAAAGAAACAGTTACCTTGACATCCACTACTGGTAAAGTCGTAACCCTAAAAGATATTATCTTTGGGTGTGGGAATGAGAACAATTCAACCATAACTGGAACTGAAATGGGTGTTATTGGGCTTGGACGTGGCCCCTTGTCATTTATTTCTCAAATTGCTCCCTATGTTGGAGGAAAAAGATTCTCACATTGCTTGGTGCTAGATCCCAACATTGAAAGCAAGATCTATTTTGGGAACGGCAGTGAAGTTTTGGGTGAAGGGGTGCTGACAGTACCTTTGTTCGATGAACAACCAGGCGGGAGTAACTATTATGTGACAGTACCAGGAATTACCATCGGAAATGACTTTGTTCCTTTTAACTCAACTGGGACATTGCTCAAGAAGGGTAACATGGTGGTCGATTCAGGTACACCTATGACAAATTTACCACAAGAATTTTTTGACCGGGTGGTAGCTCAGCTAAAAAAGACAGTTGAATTGGAATCATTCATATCTCCGGAAGATTCTACCCTTTGCTTCAACTCCACAATGGTTCCAAAATTCCCAACAGTGGTTTTACATTTTGAAGGTGGTGGCGAGCTGCCATTGAATGAGACCCAATTATTTTATAGAAATGAAGAGACCAAGGCATTTTGCTTTATGATGGTGAACACTACTGAAGATTATGGTATTTTTGGAGGTTCTCTTCAGACAGATTTCTTGATTGGTTTTGACTTGGATACAAAAGTGGTATCTTTCAAGCCAACTAATTGCGCAAACTTCAACAAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

377

Amino Acids

41.37

Weight (kDa)

5.1

Isoelectric Point (pI)

27.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 20 - 199 4.9e-51 Xylanase inhibitor N-terminal
Asp PF00026 21 - 73 4.8e-06 Eukaryotic aspartyl protease
Asp PF00026 108 - 366 6e-10 Eukaryotic aspartyl protease
TAXi_C PF14541 222 - 367 1.9e-24 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1114
AccI GTMKAC 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 856
AciI CCGC 1 cut(s) 657
AclWI GGATC 4 cut(s) 28, 32, 45, 557
AcsI RAATTY 3 cut(s) 781, 794, 899
AcuI CTGAAG 2 cut(s) 1031, 1038
AfaI GTAC 4 cut(s) 314, 633, 681, 769
AfiI CCNNNNNNNGG 3 cut(s) 47, 527, 910
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 9 cut(s) 201, 447, 575, 836, 880, 926, 949, 1099, 1123
AjiI CACGTC 2 cut(s) 336, 488
AjnI CCWGG 2 cut(s) 652, 682
AluBI AGCT 4 cut(s) 815, 820, 940, 1131
AluI AGCT 4 cut(s) 815, 820, 940, 1131
Alw26I GTCTC 2 cut(s) 947, 974
AlwI GGATC 4 cut(s) 28, 32, 45, 557
Ama87I CYCGRG 1 cut(s) 187
Aor13HI TCCGGA 1 cut(s) 856
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 1 cut(s) 940
ApoI RAATTY 3 cut(s) 781, 794, 899
ArsI GACNNNNNNTTYG 2 cut(s) 619, 651
AseI ATTAAT 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 1115
AspS9I GGNCC 3 cut(s) 5, 302, 491
AsuC2I CCSGG 3 cut(s) 18, 42, 806
AsuHPI GGTGA 2 cut(s) 626, 1018
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 2 cut(s) 5, 302
BaeI ACNNNNGTAYC 2 cut(s) 1071, 1104
BamHI GGATCC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 927
BccI CCATC 2 cut(s) 701, 997
BceAI ACGGC 1 cut(s) 613
BciT130I CCWGG 2 cut(s) 654, 684
BciVI GTATCC 1 cut(s) 1072
BcnI CCSGG 3 cut(s) 18, 42, 806
BcoDI GTCTC 2 cut(s) 947, 974
BfaI CTAG 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 235
BfuI GTATCC 1 cut(s) 1072
BglII AGATCT 1 cut(s) 582
BisI GCNGC 1 cut(s) 941
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 1 cut(s) 942
Bme1390I CCNGG 5 cut(s) 18, 42, 654, 684, 806
Bme18I GGWCC 2 cut(s) 5, 302
BmeT110I CYCGRG 1 cut(s) 187
BmgBI CACGTC 2 cut(s) 336, 488
BmgT120I GGNCC 3 cut(s) 5, 302, 491
BmiI GGNNCC 5 cut(s) 6, 39, 79, 493, 894
BmrFI CCNGG 5 cut(s) 18, 42, 654, 684, 806
BmrI ACTGGG 1 cut(s) 735
BmuI ACTGGG 1 cut(s) 735
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 3 cut(s) 18, 42, 806
BsaI GGTCTC 2 cut(s) 947, 974
BsaJI CCNNGG 1 cut(s) 984
BsaWI WCCGGW 1 cut(s) 856
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 527, 910
Bse1I ACTGG 4 cut(s) 352, 394, 460, 730
Bse3DI GCAATG 2 cut(s) 547, 731
BseAI TCCGGA 1 cut(s) 856
BseBI CCWGG 2 cut(s) 654, 684
BseDI CCNNGG 1 cut(s) 984
BseGI GGATG 2 cut(s) 338, 380
BseLI CCNNNNNNNGG 3 cut(s) 47, 527, 910
BseMI GCAATG 2 cut(s) 547, 731
BseMII CTCAG 1 cut(s) 830
BseNI ACTGG 4 cut(s) 352, 394, 460, 730
BseXI GCAGC 1 cut(s) 927
BshFI GGCC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 4 cut(s) 17, 41, 805, 857
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 3 cut(s) 47, 527, 910
BsmAI GTCTC 2 cut(s) 947, 974
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 1 cut(s) 492
Bso31I GGTCTC 2 cut(s) 947, 974
BsoBI CYCGRG 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 856
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 5 cut(s) 20, 37, 121, 562, 582
Bsp1720I GCTNAGC 1 cut(s) 816
BspACI CCGC 1 cut(s) 657
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 1 cut(s) 829
BspEI TCCGGA 1 cut(s) 856
BspLI GGNNCC 5 cut(s) 6, 39, 79, 493, 894
BspPI GGATC 4 cut(s) 28, 32, 45, 557
BspTNI GGTCTC 2 cut(s) 947, 974
BsrDI GCAATG 2 cut(s) 547, 731
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 4 cut(s) 352, 394, 460, 730
BssECI CCNNGG 1 cut(s) 984
BssMI GATC 5 cut(s) 20, 37, 121, 562, 582
BssT1I CCWWGG 1 cut(s) 984
Bst2UI CCWGG 2 cut(s) 654, 684
Bst4CI ACNGT 7 cut(s) 147, 236, 370, 631, 679, 832, 910
Bst6I CTCTTC 2 cut(s) 972, 1050
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 3 cut(s) 157, 229, 938
BstDEI CTNAG 1 cut(s) 816
BstF5I GGATG 2 cut(s) 338, 380
BstHHI GCGC 1 cut(s) 1115
BstKTI GATC 5 cut(s) 23, 40, 124, 565, 585
BstMAI GTCTC 2 cut(s) 947, 974
BstMBI GATC 5 cut(s) 20, 37, 121, 562, 582
BstNI CCWGG 2 cut(s) 654, 684
BstSCI CCNGG 5 cut(s) 16, 40, 652, 682, 804
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 927
BstX2I RGATCY 3 cut(s) 37, 562, 582
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 3 cut(s) 37, 562, 582
BsuI GTATCC 1 cut(s) 1072
BsuRI GGCC 1 cut(s) 492
BtrI CACGTC 2 cut(s) 336, 488
BtsCI GGATG 2 cut(s) 338, 380
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 2 cut(s) 607, 915
Cac8I GCNNGC 3 cut(s) 157, 229, 938
CfoI GCGC 1 cut(s) 1115
Cfr13I GGNCC 3 cut(s) 5, 302, 491
Csp6I GTAC 4 cut(s) 313, 632, 680, 768
CviAII CATG 1 cut(s) 751
CviJI RGCY 8 cut(s) 359, 481, 492, 815, 820, 940, 1102, 1131
CviKI_1 RGCY 8 cut(s) 359, 481, 492, 815, 820, 940, 1102, 1131
CviQI GTAC 4 cut(s) 313, 632, 680, 768
DdeI CTNAG 1 cut(s) 816
DpnI GATC 5 cut(s) 22, 39, 123, 564, 584
DpnII GATC 5 cut(s) 20, 37, 121, 562, 582
Eam1104I CTCTTC 2 cut(s) 972, 1050
EarI CTCTTC 2 cut(s) 972, 1050
Eco130I CCWWGG 1 cut(s) 984
Eco31I GGTCTC 2 cut(s) 947, 974
Eco47I GGWCC 2 cut(s) 5, 302
Eco57I CTGAAG 2 cut(s) 1031, 1038
Eco88I CYCGRG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 652, 682
EcoT14I CCWWGG 1 cut(s) 984
ErhI CCWWGG 1 cut(s) 984
FaeI CATG 1 cut(s) 754
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 1 cut(s) 742
FatI CATG 1 cut(s) 750
FauI CCCGC 1 cut(s) 650
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 941
FokI GGATG 2 cut(s) 325, 367
Fsp4HI GCNGC 1 cut(s) 941
FspBI CTAG 1 cut(s) 560
FspI TGCGCA 1 cut(s) 1114
GlaI GCGC 1 cut(s) 1114
GluI GCNGC 1 cut(s) 941
HaeIII GGCC 1 cut(s) 492
HapII CCGG 4 cut(s) 17, 41, 805, 857
HhaI GCGC 1 cut(s) 1115
Hin1II CATG 1 cut(s) 754
Hin6I GCGC 1 cut(s) 1113
HinP1I GCGC 1 cut(s) 1113
HinfI GANTC 5 cut(s) 240, 540, 761, 842, 863
HpaII CCGG 4 cut(s) 17, 41, 805, 857
HphI GGTGA 2 cut(s) 626, 1018
Hpy166II GTNNAC 3 cut(s) 239, 770, 1009
Hpy188I TCNGA 2 cut(s) 698, 1050
Hpy188III TCNNGA 6 cut(s) 8, 24, 255, 739, 857, 1060
Hpy8I GTNNAC 3 cut(s) 239, 770, 1009
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 611, 736, 920
HpyCH4III ACNGT 7 cut(s) 147, 236, 370, 631, 679, 832, 910
HpyCH4IV ACGT 2 cut(s) 335, 487
HpyCH4V TGCA 3 cut(s) 101, 227, 353
HpyF3I CTNAG 1 cut(s) 816
HpySE526I ACGT 2 cut(s) 335, 487
Hsp92II CATG 1 cut(s) 754
HspAI GCGC 1 cut(s) 1113
Kpn2I TCCGGA 1 cut(s) 856
Kzo9I GATC 5 cut(s) 20, 37, 121, 562, 582
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 1 cut(s) 927
MaeI CTAG 1 cut(s) 560
MaeII ACGT 2 cut(s) 335, 487
MaeIII GTNAC 5 cut(s) 370, 400, 662, 673, 746
MalI GATC 5 cut(s) 22, 39, 123, 564, 584
MboI GATC 5 cut(s) 20, 37, 121, 562, 582
MboII GAAGA 5 cut(s) 189, 872, 989, 1031, 1037
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 3 cut(s) 37, 562, 582
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 508
MnlI CCTC 3 cut(s) 352, 524, 1031
MroI TCCGGA 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 2 cut(s) 216, 717
MspI CCGG 4 cut(s) 17, 41, 805, 857
MspR9I CCNGG 5 cut(s) 18, 42, 654, 684, 806
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 2 cut(s) 654, 684
NciI CCSGG 3 cut(s) 18, 42, 806
NdeII GATC 5 cut(s) 20, 37, 121, 562, 582
NlaIII CATG 1 cut(s) 754
NlaIV GGNNCC 5 cut(s) 6, 39, 79, 493, 894
NmuCI GTSAC 1 cut(s) 673
NsbI TGCGCA 1 cut(s) 1114
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 4 cut(s) 540, 761, 842, 863
PkrI GCNGC 1 cut(s) 942
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PpuMI RGGWCCY 1 cut(s) 302
PshBI ATTAAT 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 652, 682
PspGI CCWGG 2 cut(s) 652, 682
PspN4I GGNNCC 5 cut(s) 6, 39, 79, 493, 894
PspPI GGNCC 3 cut(s) 5, 302, 491
PspPPI RGGWCCY 1 cut(s) 302
PsuI RGATCY 3 cut(s) 37, 562, 582
RsaI GTAC 4 cut(s) 314, 633, 681, 769
RsaNI GTAC 4 cut(s) 313, 632, 680, 768
SaqAI TTAA 2 cut(s) 216, 717
SatI GCNGC 1 cut(s) 941
Sau3AI GATC 5 cut(s) 20, 37, 121, 562, 582
Sau96I GGNCC 3 cut(s) 5, 302, 491
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 5 cut(s) 18, 42, 654, 684, 806
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 2 cut(s) 5, 302
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SsiI CCGC 1 cut(s) 657
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 5 cut(s) 16, 40, 652, 682, 804
StyI CCWWGG 1 cut(s) 984
TaaI ACNGT 7 cut(s) 147, 236, 370, 631, 679, 832, 910
TaiI ACGT 2 cut(s) 338, 490
TaqI TCGA 3 cut(s) 344, 642, 759
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 4 cut(s) 540, 761, 842, 863
Tru1I TTAA 2 cut(s) 216, 717
Tru9I TTAA 2 cut(s) 216, 717
TscAI CASTG 2 cut(s) 607, 915
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 1 cut(s) 940
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 5 cut(s) 44, 77, 660, 838, 990
TspRI CASTG 2 cut(s) 607, 915
VpaK11BI GGWCC 2 cut(s) 5, 302
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 3 cut(s) 781, 794, 899
XmiI GTMKAC 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.