FvH4_6g03100

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000230
Physical Location & Seq
Forward (+)
1735406 .. 1735792
387 bp
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UTR
Exon/CDS
Intron
FvH4_6g03100.t1

Sequence Viewer

Length: 387 bp
ATGGTATCAAGAATTAGCATCGGAAATGATTTTGTTCCATTTAACTCAAATGGTACCCTGCTGAAAAAAGATAACATGTTGATCGACTCAGGTACACCTTTTCCACGACTACCAAAAGATCTGTTTGACCGGGTGGTAACTAAGATACAAAAGGCAGTTCCATTAGAGTCAGTCGTAAATAAAAACTATGGGTTGGATACCCTTTGTTTTTTTACCACAACGCCTTCAGAATTGCCAAGAATTGCTTTACATTTTGAGGGTGGTGGCGAAGTGTTGTTGAGCAATAAGGTGTTAACAGCTCGCGAGAATGGGATGTATTGCCTTGTAATCGTGGGCGGCACTGATGACTTTGGCTATTTTGGGGGCATGCTTCAGACAGATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

129

Amino Acids

14.06

Weight (kDa)

5.27

Isoelectric Point (pI)

26.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 2 - 126 5.8e-12 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 385
Acc65I GGTACC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 53
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 336
AcuI CTGAAG 2 cut(s) 210, 356
AfaI GTAC 2 cut(s) 55, 94
AflIII ACRYGT 1 cut(s) 75
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Asp718I GGTACC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 131
BanI GGYRCC 1 cut(s) 53
BciVI GTATCC 1 cut(s) 190
BcnI CCSGG 1 cut(s) 131
BfuI GTATCC 1 cut(s) 190
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 130
Bsp143I GATC 2 cut(s) 81, 118
Bsp68I TCGCGA 1 cut(s) 303
BspACI CCGC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 53
BssMI GATC 2 cut(s) 81, 118
BstC8I GCNNGC 2 cut(s) 301, 368
BstDEI CTNAG 2 cut(s) 88, 141
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 303
BstKTI GATC 2 cut(s) 84, 121
BstMBI GATC 2 cut(s) 81, 118
BstNSI RCATGY 2 cut(s) 79, 370
BstSCI CCNGG 1 cut(s) 129
BstUI CGCG 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 339
BtuMI TCGCGA 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 301, 368
Csp6I GTAC 2 cut(s) 54, 93
CviAII CATG 2 cut(s) 76, 367
CviJI RGCY 2 cut(s) 299, 354
CviKI_1 RGCY 2 cut(s) 299, 354
CviQI GTAC 2 cut(s) 54, 93
DdeI CTNAG 2 cut(s) 88, 141
DpnI GATC 2 cut(s) 83, 120
DpnII GATC 2 cut(s) 81, 118
Eco57I CTGAAG 2 cut(s) 210, 356
FaeI CATG 2 cut(s) 79, 370
FaiI YATR 4 cut(s) 77, 189, 368, 385
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FatI CATG 2 cut(s) 75, 366
Fnu4HI GCNGC 1 cut(s) 337
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 1 cut(s) 337
GluI GCNGC 1 cut(s) 337
HapII CCGG 1 cut(s) 130
Hin1II CATG 2 cut(s) 79, 370
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 2 cut(s) 86, 167
HpaI GTTAAC 1 cut(s) 294
HpaII CCGG 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 95, 294
Hpy188I TCNGA 3 cut(s) 23, 229, 375
Hpy188III TCNNGA 2 cut(s) 9, 302
Hpy8I GTNNAC 2 cut(s) 95, 294
HpyAV CCTTC 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 88, 141
Hsp92II CATG 2 cut(s) 79, 370
KpnI GGTACC 1 cut(s) 57
KspAI GTTAAC 1 cut(s) 294
Kzo9I GATC 2 cut(s) 81, 118
LpnPI CCDG 3 cut(s) 71, 75, 143
LweI GCATC 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 83, 120
MboI GATC 2 cut(s) 81, 118
MflI RGATCY 1 cut(s) 118
MluCI AATT 3 cut(s) 12, 230, 240
MlyI GAGTC 2 cut(s) 80, 176
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 1 cut(s) 250
MseI TTAA 2 cut(s) 42, 293
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 303
NciI CCSGG 1 cut(s) 131
NdeII GATC 2 cut(s) 81, 118
NlaIII CATG 2 cut(s) 79, 370
NlaIV GGNNCC 1 cut(s) 55
NruI TCGCGA 1 cut(s) 303
NspI RCATGY 2 cut(s) 79, 370
PaeI GCATGC 1 cut(s) 370
PciI ACATGT 1 cut(s) 75
PkrI GCNGC 1 cut(s) 338
PleI GAGTC 2 cut(s) 80, 175
PpsI GAGTC 2 cut(s) 80, 175
PscI ACATGT 1 cut(s) 75
PsiI TTATAA 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 118
RruI TCGCGA 1 cut(s) 303
RsaI GTAC 2 cut(s) 55, 94
RsaNI GTAC 2 cut(s) 54, 93
SaqAI TTAA 2 cut(s) 42, 293
SatI GCNGC 1 cut(s) 337
Sau3AI GATC 2 cut(s) 81, 118
SchI GAGTC 2 cut(s) 80, 176
ScrFI CCNGG 1 cut(s) 131
SetI ASST 4 cut(s) 94, 100, 291, 301
SfaNI GCATC 1 cut(s) 27
SphI GCATGC 1 cut(s) 370
Sse9I AATT 3 cut(s) 12, 230, 240
SsiI CCGC 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 129
TaqI TCGA 1 cut(s) 84
TasI AATT 3 cut(s) 12, 230, 240
TauI GCSGC 1 cut(s) 339
Tru1I TTAA 2 cut(s) 42, 293
Tru9I TTAA 2 cut(s) 42, 293
TscAI CASTG 1 cut(s) 346
TspRI CASTG 1 cut(s) 346
XceI RCATGY 2 cut(s) 79, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.