FvH4_6g03370

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000230
Physical Location & Seq
Forward (+)
1863877 .. 1865453
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03370.t1

Sequence Viewer

Length: 1203 bp
ATGGCCCGGGTCATGTTCCAAGTTATTTCTAAAAACAATAGTTCCAACACTACTCATGGCAAACACAAACTTCTCAACCTTCTATTACAACAAATCAATATGTTCTCATTGGGAACCCCACCCTCAGATGTTTATGCAATTGCTGATATTGCTGATACAGGCAGCAGTTTACTATGGACCCAATGCAAGCCGTGTAAGAATTGCTCCAAGACCAAATATGCCATTTTCGACCCGAGTAAATCCTCAACTTATAGGAACATTACTTGTTCTGATAAAGAGTGTAGACTTGGCGACGACATGAGAGAATCACCAAACATTCCCCCAGATTTCTGTACAAAATATCCTACAAGAAGGTGTCCTTATGGTCTTACATATGGAGGCGGGGGAACCAGCGAAGGTGTATTGGCAACAGAAACAGTTGCTTTGACATCTAGGACAGGGAATGCCGTAACCCTAAAAGATATTATCTTTGGGTGTGGGCATTCCACCAAACAGCCATCTAGTACTAGAGTGGAAATGGGGGTGATCGGGTTTGGACGTAGACCCATGTCATTTGTTTCTCAGATTGCTCCCTATGTTGGAGGAAATAAATTTTCTCATTGCTTGGTGCCTCTAGCTACTGATCCCAAAATCGAAAGTAAGATCAATTTCGGAAATGGGAGTGAAGTTTCAGGTGAAGGGGTTGTCTCAACTCCATTGGTGCCAGACGAGGGTCACTATATTGTGATGGCAGAAGGAATGACCATCGGAAATGAATTTGTTCCGTTTTACTCAAACGTGACATCGCTCAACAAAATTAAGATGGTACTCGACTCAGGCTCAACTTTAACAACGTTACCTCAACATCTTTTTGACAGGGTAATAACTGAGCTGAATAAGACACTTGATCCAAAAATGCAGTCGTTCTTTGTGACTAAACAACAAACACTTTTATGCTTCAACTCGACGGAAATTCCAGAAGAACCAAAAATGAGTTTTCATTTCGAGGGTGGTGGCAAAGTGCAGTTACTTACAGAACAAATGTTTGTAAAAAATGATGAAAAAAACATATCATGTTTTGGAATCAAGCGTCCAGGTGATAAGGGAGCAGTAGAACCTGATATGGGTGTTTTTGGAGCTATTATGCAGGGAAATATGTTGGTTGGTTTTGACCTGGATAGAGAAGTGGTATCCTTCAAGCCAACTGATTGCTTAACCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

401

Amino Acids

43.82

Weight (kDa)

7.01

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 35 - 219 5.3e-43 Xylanase inhibitor N-terminal
Asp PF00026 114 - 392 6.3e-12 Eukaryotic aspartyl protease
TAXi_C PF14541 239 - 393 6e-21 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 607, 700
AccI GTMKAC 2 cut(s) 283, 541
AciI CCGC 1 cut(s) 381
AclI AACGTT 1 cut(s) 833
AclWI GGATC 2 cut(s) 617, 881
AcsI RAATTY 3 cut(s) 590, 755, 951
AfaI GTAC 3 cut(s) 334, 505, 807
AfiI CCNNNNNNNGG 3 cut(s) 578, 710, 1103
AgsI TTSAA 2 cut(s) 940, 1177
AjnI CCWGG 2 cut(s) 1072, 1152
AluBI AGCT 3 cut(s) 617, 871, 1118
AluI AGCT 3 cut(s) 617, 871, 1118
Alw26I GTCTC 1 cut(s) 691
AlwI GGATC 2 cut(s) 617, 881
Ama87I CYCGRG 2 cut(s) 6, 232
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 3 cut(s) 590, 755, 951
ArsI GACNNNNNNTTYG 2 cut(s) 884, 916
Asp700I GAANNNNTTC 1 cut(s) 759
AspS9I GGNCC 2 cut(s) 4, 177
AsuC2I CCSGG 2 cut(s) 7, 8
AsuHPI GGTGA 4 cut(s) 300, 535, 686, 1088
AvaI CYCGRG 2 cut(s) 6, 232
AvaII GGWCC 1 cut(s) 177
BanI GGYRCC 2 cut(s) 607, 700
BbvI GCAGC 1 cut(s) 174
BccI CCATC 4 cut(s) 505, 721, 752, 796
BceAI ACGGC 2 cut(s) 175, 431
BciT130I CCWGG 2 cut(s) 1074, 1154
BciVI GTATCC 1 cut(s) 1180
BcnI CCSGG 2 cut(s) 7, 8
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 5 cut(s) 432, 501, 507, 614, 1201
BfuI GTATCC 1 cut(s) 1180
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 505
Bme1390I CCNGG 4 cut(s) 7, 8, 1074, 1154
Bme18I GGWCC 1 cut(s) 177
BmeT110I CYCGRG 2 cut(s) 6, 232
BmgT120I GGNCC 2 cut(s) 4, 177
BmiI GGNNCC 5 cut(s) 115, 179, 388, 609, 702
BmrFI CCNGG 4 cut(s) 7, 8, 1074, 1154
BoxI GACNNNNGTC 2 cut(s) 547, 711
BpuMI CCSGG 2 cut(s) 7, 8
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 3 cut(s) 578, 710, 1103
Bse3DI GCAATG 1 cut(s) 598
BseBI CCWGG 2 cut(s) 1074, 1154
BseDI CCNNGG 1 cut(s) 6
BseLI CCNNNNNNNGG 3 cut(s) 578, 710, 1103
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 4 cut(s) 138, 575, 828, 858
BseXI GCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 1022
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 607, 700
BsiHKCI CYCGRG 2 cut(s) 6, 232
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 3 cut(s) 578, 710, 1103
BsmAI GTCTC 1 cut(s) 691
BsmI GAATGC 2 cut(s) 448, 481
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 6, 232
Bsp1407I TGTACA 1 cut(s) 332
Bsp143I GATC 4 cut(s) 525, 622, 642, 886
BspACI CCGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 137, 574, 827, 859
BspLI GGNNCC 5 cut(s) 115, 179, 388, 609, 702
BspPI GGATC 2 cut(s) 617, 881
BspT107I GGYRCC 2 cut(s) 607, 700
BsrDI GCAATG 1 cut(s) 598
BsrGI TGTACA 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 4 cut(s) 525, 622, 642, 886
Bst2UI CCWGG 2 cut(s) 1074, 1154
Bst4CI ACNGT 1 cut(s) 418
BstAUI TGTACA 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 4 cut(s) 124, 561, 814, 867
BstKTI GATC 4 cut(s) 528, 625, 645, 889
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 4 cut(s) 525, 622, 642, 886
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 2 cut(s) 1074, 1154
BstPAI GACNNNNGTC 2 cut(s) 547, 711
BstSCI CCNGG 4 cut(s) 5, 6, 1072, 1152
BstV1I GCAGC 1 cut(s) 174
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 768
Cac8I GCNNGC 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 4, 177
Cfr9I CCCGGG 1 cut(s) 6
CseI GACGC 1 cut(s) 1058
Csp6I GTAC 3 cut(s) 333, 504, 806
CviAII CATG 5 cut(s) 13, 56, 298, 547, 1053
CviJI RGCY 8 cut(s) 5, 190, 496, 617, 819, 871, 1118, 1180
CviKI_1 RGCY 8 cut(s) 5, 190, 496, 617, 819, 871, 1118, 1180
CviQI GTAC 3 cut(s) 333, 504, 806
DdeI CTNAG 4 cut(s) 124, 561, 814, 867
DpnI GATC 4 cut(s) 527, 624, 644, 888
DpnII GATC 4 cut(s) 525, 622, 642, 886
Eco47I GGWCC 1 cut(s) 177
Eco88I CYCGRG 2 cut(s) 6, 232
EcoRII CCWGG 2 cut(s) 1072, 1152
FaeI CATG 5 cut(s) 16, 59, 301, 550, 1056
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FatI CATG 5 cut(s) 12, 55, 297, 546, 1052
FauI CCCGC 1 cut(s) 374
FauNDI CATATG 1 cut(s) 373
FblI GTMKAC 2 cut(s) 283, 541
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
FspBI CTAG 5 cut(s) 432, 501, 507, 614, 1201
GluI GCNGC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 7
HgaI GACGC 1 cut(s) 1058
Hin1II CATG 5 cut(s) 16, 59, 301, 550, 1056
HinfI GANTC 3 cut(s) 305, 812, 1062
HpaII CCGG 1 cut(s) 7
HphI GGTGA 4 cut(s) 300, 535, 686, 1088
Hpy166II GTNNAC 3 cut(s) 170, 284, 542
Hpy188I TCNGA 5 cut(s) 127, 271, 564, 653, 749
Hpy188III TCNNGA 1 cut(s) 956
Hpy8I GTNNAC 3 cut(s) 170, 284, 542
Hpy99I CGWCG 2 cut(s) 296, 949
HpyAV CCTTC 6 cut(s) 89, 345, 389, 671, 728, 1183
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 3 cut(s) 538, 777, 833
HpyCH4V TGCA 5 cut(s) 137, 186, 898, 1003, 1126
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 4 cut(s) 124, 561, 814, 867
HpySE526I ACGT 3 cut(s) 538, 777, 833
Hsp92II CATG 5 cut(s) 16, 59, 301, 550, 1056
Kzo9I GATC 4 cut(s) 525, 622, 642, 886
LmnI GCTCC 4 cut(s) 209, 574, 1085, 1115
Lsp1109I GCAGC 1 cut(s) 174
MaeI CTAG 5 cut(s) 432, 501, 507, 614, 1201
MaeII ACGT 3 cut(s) 538, 777, 833
MaeIII GTNAC 6 cut(s) 448, 713, 778, 834, 910, 1005
MalI GATC 4 cut(s) 527, 624, 644, 888
MboI GATC 4 cut(s) 525, 622, 642, 886
MboII GAAGA 1 cut(s) 971
MfeI CAATTG 1 cut(s) 138
MluCI AATT 7 cut(s) 138, 199, 590, 646, 755, 795, 951
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 2 cut(s) 69, 559
MnlI CCTC 8 cut(s) 133, 253, 371, 575, 621, 703, 849, 979
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 3 cut(s) 798, 827, 1193
MslI CAYNNNNRTG 1 cut(s) 931
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 4 cut(s) 7, 8, 1074, 1154
MunI CAATTG 1 cut(s) 138
Mva1269I GAATGC 2 cut(s) 448, 481
MvaI CCWGG 2 cut(s) 1074, 1154
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 2 cut(s) 7, 8
NdeI CATATG 1 cut(s) 373
NdeII GATC 4 cut(s) 525, 622, 642, 886
NlaIII CATG 5 cut(s) 16, 59, 301, 550, 1056
NlaIV GGNNCC 5 cut(s) 115, 179, 388, 609, 702
NmuCI GTSAC 3 cut(s) 713, 778, 910
PctI GAATGC 2 cut(s) 448, 481
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 2 cut(s) 305, 1062
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 806
PpsI GAGTC 1 cut(s) 806
PshAI GACNNNNGTC 2 cut(s) 547, 711
Psp1406I AACGTT 1 cut(s) 833
Psp6I CCWGG 2 cut(s) 1072, 1152
PspGI CCWGG 2 cut(s) 1072, 1152
PspN4I GGNNCC 5 cut(s) 115, 179, 388, 609, 702
PspPI GGNCC 2 cut(s) 4, 177
RsaI GTAC 3 cut(s) 334, 505, 807
RsaNI GTAC 3 cut(s) 333, 504, 806
RseI CAYNNNNRTG 1 cut(s) 931
SaqAI TTAA 3 cut(s) 798, 827, 1193
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 4 cut(s) 525, 622, 642, 886
Sau96I GGNCC 2 cut(s) 4, 177
ScaI AGTACT 1 cut(s) 505
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 4 cut(s) 7, 8, 1074, 1154
SinI GGWCC 1 cut(s) 177
SmaI CCCGGG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 931
Sse9I AATT 7 cut(s) 138, 199, 590, 646, 755, 795, 951
SsiI CCGC 1 cut(s) 381
SspMI CTAG 5 cut(s) 432, 501, 507, 614, 1201
StyD4I CCNGG 4 cut(s) 5, 6, 1072, 1152
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 3 cut(s) 541, 780, 836
TaqI TCGA 5 cut(s) 228, 633, 810, 944, 984
TasI AATT 7 cut(s) 138, 199, 590, 646, 755, 795, 951
TatI WGTACW 2 cut(s) 332, 503
TfiI GAWTC 2 cut(s) 305, 1062
Tru1I TTAA 3 cut(s) 798, 827, 1193
Tru9I TTAA 3 cut(s) 798, 827, 1193
TseFI GTSAC 3 cut(s) 713, 778, 910
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 3 cut(s) 713, 778, 910
TspDTI ATGAA 3 cut(s) 768, 968, 1053
TspGWI ACGGA 2 cut(s) 753, 962
TspMI CCCGGG 1 cut(s) 6
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 3 cut(s) 590, 755, 951
XmaI CCCGGG 1 cut(s) 6
XmiI GTMKAC 2 cut(s) 283, 541
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 5 cut(s) 432, 501, 507, 614, 1201
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.