Rw3G002370

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000230
Physical Location & Seq
Forward (+)
2062702 .. 2064168
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002370.1

Sequence Viewer

Length: 1467 bp
ATGGCACCTACAAACCCTAATAGTACCTTTTGTCATTTACGCAAGTATTATTATAGTATGGTGGTCATCACTATTTTTTCCATTCATCTTGTATGTTTTTCTTATACCGCAGCAGCAGATATCAACAATTATAATGGTGGATTTAGTGCTCATCTTATCCGAAGAAACTCTCCAAATTCACTCTTGTACAATCACAAAAGGAACAAAAGTTTCCGACGTTTGATGGGTCCAGAAACGCCGCAATCAACACTAGTAACCGATCCAGATGGTAGCGAACATCTTATGAAATTGTCAATAGGAACTCCGCCTTTCGATATCTATGTAATTGCTGATACAGGCAGCACCCTACTATGGACTCAATGCCAGCCATGTAATAATTGCTTCAAGACGAAACATGCCATATTTAACCCGAAAGAATCCTCAACTTATAGGAACATTACTTGTTCTGAAAGTGAGTGTAGACTTGTTGACGAGTTCTCACCTCGAAACCATTGCAAAATAAATCCTCAAGCTGCTTGCATGTATGATTCAACGTATGCAGATGAGTCATACTCTAAAGGTACACTGGCTAAAGAAGCAATTACCTTGAAGTCCACGTCAGGTAAGGTTGTAACCCTAAAAGATATTGTCATTGGGTGTGGGCAAAACAACAGTGGTATAGAGGCAAGTGAGAATGAAATGGGAATAATAGGGCTTGGACGCGGGCCCTTGTCATTTGCTTCTCAAATCAGTCCCCATGTTGGAGGCAAAAAATTCTCTTATTGCTTTGTGCCTGTTAGTACTGATCCCAAAATCGAAAGTACTATTAATTTCGGGAATGGGAGTGAAGTTTCGGGTGAAGAGGTGGTGTCAACACCTTTGATCGATGTAGAATCGGACATGGATAGTTATCTTGTGACGATGAAAGGAATTACAATTGGAAATGATTTTATTCCTTTTAACTCAACAGGGACAATGCTTGAGAAAGGTAACACGTTGATCGACTCAGGCACAGCTTTATCATATTTACCTCAAGATTTTTATGAACGGGTGGTGAATCAGCTCGTAAACAAACTTGATCCGAATTTGGAGGTAATCAATTATATTGACGAAGATAATTCAAGTAGCATATGCTTCAACACGACAACGCTTCCAAAAGCACCAAATATGGCTGTGCATTTTGACGATGGTGGAAAATTACAATTAACGGCGGAACATATATTTAGAGACGAAGAGAAAAAATTAGTCTGCCTTGGACTAAAGAACTCTAGTAAGCAGGGCTTCTCTAGTGACGATATTGGTGTTCTCGGAAACAATGTTCAAGAAAATTTCTTGATTGGTTTTGACTTGGATAAAAAATGGGTCTCCTTCAAGCCTACTAATTGCATAAAGATGGCTGCTGCTAGTGGTGCTAATATTGCTACTCATGTCTTTTCCATTTTCTCTACTTGCCTTTTGTATTTGTTTTTGATTGTGAAATCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

488

Amino Acids

53.7

Weight (kDa)

5.8

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 94 - 273 9.4e-49 Xylanase inhibitor N-terminal
Asp PF00026 94 - 145 8.1e-08 Eukaryotic aspartyl protease
Asp PF00026 147 - 450 1.3e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 297 - 451 6.1e-24 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 460
AccII CGCG 1 cut(s) 702
AciI CCGC 5 cut(s) 108, 239, 305, 702, 1190
AclWI GGATC 3 cut(s) 254, 779, 1052
AcsI RAATTY 4 cut(s) 175, 752, 1063, 1306
AfaI GTAC 5 cut(s) 25, 188, 562, 781, 802
AfiI CCNNNNNNNGG 2 cut(s) 351, 740
AflIII ACRYGT 1 cut(s) 972
AgsI TTSAA 7 cut(s) 385, 531, 589, 1101, 1117, 1301, 1351
AhlI ACTAGT 1 cut(s) 250
AjiI CACGTC 1 cut(s) 597
AloI GAACNNNNNNTCC 2 cut(s) 1281, 1313
AluBI AGCT 3 cut(s) 512, 995, 1042
AluI AGCT 3 cut(s) 512, 995, 1042
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 1200, 1348
AlwI GGATC 3 cut(s) 254, 779, 1052
AoxI GGCC 1 cut(s) 704
ApaI GGGCCC 1 cut(s) 708
ApeKI GCWGC 6 cut(s) 110, 113, 339, 512, 1376, 1379
ApoI RAATTY 4 cut(s) 175, 752, 1063, 1306
AseI ATTAAT 1 cut(s) 807
AspS9I GGNCC 3 cut(s) 227, 704, 705
AsuHPI GGTGA 3 cut(s) 471, 848, 1045
AvaII GGWCC 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 708
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 6 cut(s) 122, 125, 351, 499, 1363, 1366
BccI CCATC 4 cut(s) 217, 260, 1160, 1366
BceAI ACGGC 1 cut(s) 1203
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BcoDI GTCTC 2 cut(s) 1200, 1348
BcuI ACTAGT 1 cut(s) 250
BfaI CTAG 4 cut(s) 251, 1248, 1266, 1383
BisI GCNGC 7 cut(s) 111, 114, 239, 340, 513, 1377, 1380
BlsI GCNGC 7 cut(s) 112, 115, 240, 341, 514, 1378, 1381
BmcAI AGTACT 2 cut(s) 781, 802
Bme18I GGWCC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 597
BmgT120I GGNCC 3 cut(s) 227, 704, 705
BmiI GGNNCC 3 cut(s) 6, 228, 706
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpuEI CTTGAG 3 cut(s) 492, 980, 996
Bsa29I ATCGAT 1 cut(s) 864
BsaBI GATNNNNATC 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 1348
BsaJI CCNNGG 1 cut(s) 1231
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 740
Bse1I ACTGG 1 cut(s) 570
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 888
BseCI ATCGAT 1 cut(s) 864
BseDI CCNNGG 1 cut(s) 1231
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 2 cut(s) 351, 740
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 1 cut(s) 999
BseNI ACTGG 1 cut(s) 570
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 6 cut(s) 122, 125, 351, 499, 1363, 1366
Bsh1236I CGCG 1 cut(s) 702
BshFI GGCC 1 cut(s) 706
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 864
BsiHKAI GWGCWC 1 cut(s) 151
BslFI GGGAC 2 cut(s) 717, 964
BslI CCNNNNNNNGG 2 cut(s) 351, 740
BsmAI GTCTC 2 cut(s) 1200, 1348
BsmBI CGTCTC 1 cut(s) 1200
BsmFI GGGAC 2 cut(s) 717, 964
BsnI GGCC 1 cut(s) 706
Bso31I GGTCTC 1 cut(s) 1348
Bsp120I GGGCCC 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 151, 708
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 5 cut(s) 259, 784, 861, 978, 1057
BspACI CCGC 5 cut(s) 108, 239, 305, 702, 1190
BspANI GGCC 1 cut(s) 706
BspCNI CTCAG 1 cut(s) 998
BspDI ATCGAT 1 cut(s) 864
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 3 cut(s) 6, 228, 706
BspPI GGATC 3 cut(s) 254, 779, 1052
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 1348
BsrDI GCAATG 1 cut(s) 490
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 1 cut(s) 570
BssECI CCNNGG 1 cut(s) 1231
BssMI GATC 5 cut(s) 259, 784, 861, 978, 1057
BssT1I CCWWGG 1 cut(s) 1231
Bst4CI ACNGT 1 cut(s) 653
Bst6I CTCTTC 2 cut(s) 834, 1206
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 365, 517, 704
BstDEI CTNAG 2 cut(s) 985, 1464
BstFNI CGCG 1 cut(s) 702
BstKTI GATC 5 cut(s) 262, 787, 864, 981, 1060
BstMAI GTCTC 2 cut(s) 1200, 1348
BstMBI GATC 5 cut(s) 259, 784, 861, 978, 1057
BstMWI GCNNNNNNNGC 3 cut(s) 575, 1388, 1397
BstNSI RCATGY 2 cut(s) 398, 523
BstSLI GKGCMC 1 cut(s) 708
BstUI CGCG 1 cut(s) 702
BstV1I GCAGC 6 cut(s) 122, 125, 351, 499, 1363, 1366
Bsu15I ATCGAT 1 cut(s) 864
BsuRI GGCC 1 cut(s) 706
BsuTUI ATCGAT 1 cut(s) 864
BtrI CACGTC 1 cut(s) 597
BtsIMutI CAGTG 2 cut(s) 563, 658
Cac8I GCNNGC 3 cut(s) 365, 517, 704
Cfr13I GGNCC 3 cut(s) 227, 704, 705
ClaI ATCGAT 1 cut(s) 864
CseI GACGC 1 cut(s) 708
Csp6I GTAC 5 cut(s) 24, 187, 561, 780, 801
CviAII CATG 6 cut(s) 369, 395, 520, 737, 880, 1406
CviQI GTAC 5 cut(s) 24, 187, 561, 780, 801
DdeI CTNAG 2 cut(s) 985, 1464
DpnI GATC 5 cut(s) 261, 786, 863, 980, 1059
DpnII GATC 5 cut(s) 259, 784, 861, 978, 1057
Eam1104I CTCTTC 2 cut(s) 834, 1206
EarI CTCTTC 2 cut(s) 834, 1206
EciI GGCGGA 2 cut(s) 294, 1205
Eco130I CCWWGG 1 cut(s) 1231
Eco24I GRGCYC 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 1348
Eco32I GATATC 2 cut(s) 121, 316
Eco47I GGWCC 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 705
EcoRV GATATC 2 cut(s) 121, 316
EcoT14I CCWWGG 1 cut(s) 1231
EcoT38I GRGCYC 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 1231
Esp3I CGTCTC 1 cut(s) 1200
FaeI CATG 6 cut(s) 372, 398, 523, 740, 883, 1409
FalI AAGNNNNNCTT 2 cut(s) 1244, 1276
FaqI GGGAC 2 cut(s) 717, 964
FatI CATG 6 cut(s) 368, 394, 519, 736, 879, 1405
FauI CCCGC 1 cut(s) 695
FauNDI CATATG 1 cut(s) 1109
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 7 cut(s) 111, 114, 239, 340, 513, 1377, 1380
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 7 cut(s) 111, 114, 239, 340, 513, 1377, 1380
FspBI CTAG 4 cut(s) 251, 1248, 1266, 1383
GluI GCNGC 7 cut(s) 111, 114, 239, 340, 513, 1377, 1380
HaeIII GGCC 1 cut(s) 706
HgaI GACGC 1 cut(s) 708
Hin1II CATG 6 cut(s) 372, 398, 523, 740, 883, 1409
HincII GTYRAC 2 cut(s) 469, 852
HindII GTYRAC 2 cut(s) 469, 852
HinfI GANTC 7 cut(s) 355, 416, 527, 545, 872, 983, 1036
HphI GGTGA 3 cut(s) 471, 848, 1045
Hpy166II GTNNAC 6 cut(s) 461, 469, 563, 594, 852, 1048
Hpy188I TCNGA 6 cut(s) 161, 215, 448, 877, 1062, 1289
Hpy188III TCNNGA 7 cut(s) 230, 263, 385, 814, 1013, 1301, 1312
Hpy8I GTNNAC 6 cut(s) 461, 469, 563, 594, 852, 1048
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 1 cut(s) 1357
HpyCH4III ACNGT 1 cut(s) 653
HpyCH4IV ACGT 4 cut(s) 217, 533, 596, 974
HpyCH4V TGCA 5 cut(s) 495, 519, 539, 1156, 1365
HpyF10VI GCNNNNNNNGC 3 cut(s) 575, 1388, 1397
HpyF3I CTNAG 2 cut(s) 985, 1464
HpySE526I ACGT 4 cut(s) 217, 533, 596, 974
Hsp92II CATG 6 cut(s) 372, 398, 523, 740, 883, 1409
Kzo9I GATC 5 cut(s) 259, 784, 861, 978, 1057
Lsp1109I GCAGC 6 cut(s) 122, 125, 351, 499, 1363, 1366
MaeI CTAG 4 cut(s) 251, 1248, 1266, 1383
MaeII ACGT 4 cut(s) 217, 533, 596, 974
MaeIII GTNAC 5 cut(s) 253, 610, 895, 968, 1268
MalI GATC 5 cut(s) 261, 786, 863, 980, 1059
MboI GATC 5 cut(s) 259, 784, 861, 978, 1057
MboII GAAGA 4 cut(s) 174, 851, 1103, 1223
MfeI CAATTG 1 cut(s) 915
MhlI GDGCHC 2 cut(s) 151, 708
MlyI GAGTC 3 cut(s) 349, 554, 977
MmeI TCCRAC 2 cut(s) 238, 721
MnlI CCTC 8 cut(s) 430, 492, 516, 655, 737, 835, 1020, 1063
MseI TTAA 4 cut(s) 405, 807, 939, 1184
MslI CAYNNNNRTG 1 cut(s) 1370
MunI CAATTG 1 cut(s) 915
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 3 cut(s) 575, 1388, 1397
NdeI CATATG 1 cut(s) 1109
NdeII GATC 5 cut(s) 259, 784, 861, 978, 1057
NlaIII CATG 6 cut(s) 372, 398, 523, 740, 883, 1409
NlaIV GGNNCC 3 cut(s) 6, 228, 706
NmuCI GTSAC 2 cut(s) 895, 1268
NspI RCATGY 2 cut(s) 398, 523
PfeI GAWTC 4 cut(s) 416, 527, 872, 1036
PkrI GCNGC 7 cut(s) 112, 115, 240, 341, 514, 1378, 1381
PleI GAGTC 3 cut(s) 349, 553, 977
PpsI GAGTC 3 cut(s) 349, 553, 977
PshBI ATTAAT 1 cut(s) 807
PsiI TTATAA 1 cut(s) 132
PspN4I GGNNCC 3 cut(s) 6, 228, 706
PspOMI GGGCCC 1 cut(s) 704
PspPI GGNCC 3 cut(s) 227, 704, 705
RsaI GTAC 5 cut(s) 25, 188, 562, 781, 802
RsaNI GTAC 5 cut(s) 24, 187, 561, 780, 801
RseI CAYNNNNRTG 1 cut(s) 1370
SaqAI TTAA 4 cut(s) 405, 807, 939, 1184
SatI GCNGC 7 cut(s) 111, 114, 239, 340, 513, 1377, 1380
Sau3AI GATC 5 cut(s) 259, 784, 861, 978, 1057
Sau96I GGNCC 3 cut(s) 227, 704, 705
ScaI AGTACT 2 cut(s) 781, 802
SchI GAGTC 3 cut(s) 349, 554, 977
SduI GDGCHC 2 cut(s) 151, 708
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 1370
SmlI CTYRAG 3 cut(s) 507, 959, 1011
SmoI CTYRAG 3 cut(s) 507, 959, 1011
SpeI ACTAGT 1 cut(s) 250
SsiI CCGC 5 cut(s) 108, 239, 305, 702, 1190
SspI AATATT 1 cut(s) 1396
SspMI CTAG 4 cut(s) 251, 1248, 1266, 1383
StyI CCWWGG 1 cut(s) 1231
TaaI ACNGT 1 cut(s) 653
TaiI ACGT 4 cut(s) 220, 536, 599, 977
TaqI TCGA 5 cut(s) 312, 484, 795, 864, 981
TatI WGTACW 3 cut(s) 186, 779, 800
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 4 cut(s) 416, 527, 872, 1036
Tru1I TTAA 4 cut(s) 405, 807, 939, 1184
Tru9I TTAA 4 cut(s) 405, 807, 939, 1184
TscAI CASTG 2 cut(s) 570, 658
TseFI GTSAC 2 cut(s) 895, 1268
TseI GCWGC 6 cut(s) 110, 113, 339, 512, 1376, 1379
Tsp45I GTSAC 2 cut(s) 895, 1268
TspDTI ATGAA 5 cut(s) 74, 299, 690, 917, 1038
TspRI CASTG 2 cut(s) 570, 658
VpaK11BI GGWCC 1 cut(s) 227
VspI ATTAAT 1 cut(s) 807
XapI RAATTY 4 cut(s) 175, 752, 1063, 1306
XceI RCATGY 2 cut(s) 398, 523
XmiI GTMKAC 1 cut(s) 460
XspI CTAG 4 cut(s) 251, 1248, 1266, 1383
ZrmI AGTACT 2 cut(s) 781, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.