Rw3G004860

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000230
Physical Location & Seq
Forward (+)
4087293 .. 4088675
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004860.1

Sequence Viewer

Length: 1212 bp
ATGGCTGCCTTTTGCGATTTACACAAGAATAATTATACTAGAGCAGTTATTGCTATTCTTTTATTTCATCTTATATATTATCCTGTTATAGCAGCAGCCAATATCGACAATAATTATGGTGGCTTCAGTGCGCCTCTTATTCGAATAAATTTCAAAAATCCACCATTGCACAGTCGACCCAAACACCACAAATCTGGTCGACGTTTGATAGGTCCAGACACGCCACAAGCTACACTACAAACTGATCCAGATAAACAAGATGGACATCTTATGAAGCTCTCCGTAGGAACCCCGGCCTTCGATATCTATTTAGCAATTGATACAGGCAGCACTCTATTATGGACACATTGCCAGCCATATACAACATTCTCTACAGGTGTAATGGCTAAAGAAACAGTTACCTTAAATACCACATCAGGTAAGGCTGTAACCCTAAAAGATATTCTTATTGGGTGTGCGCAAGAGCAGAAAGGTGCTACTTACACGGACGATGAAATGGGAATAATTGGGCTTGGAGGAGGGAACTTGTCATTTGTTTCTCAAATTGCTCCCTATGCTGGAGGCAAAAAATTCTCTCATTGTTTCGTGCCTAGGGATACTGATCCCAATATCGAAAGCAAGATCAATTTCGGAAAAGGAAGTGAAGTTGTGGGTGAAGGGGTGGTGTCCACACCATTGCTCGAATCACGCGGGGATGCTTATATGATCGAAGTAGAAGGAATTACTATTGGAAATGATTTTGTTCCGTTTAACTCAACAGGGACGACAATGCTTGAAATGAGGATCGACTCTGGCACACCGAAAACATATATACCTCAAGATTTTTTTCACCGGGTGGCAACTCAGTTCATGAAGACATTTGATACAGTTGATTCGAAATTGGATTCTTTCATTTCAGATGACGAGAAATATGATGAAAGTCACCTTTGCATCGAGGGTACGACGATTCCAAAAGAACCGAAAGTGGCTATTAATTTCAAGGGTGGTCAAAAATTGCAGTTCACGGGGGAACAAATATTTTTTCCAAACAAAGATTTAAACTTAACCTGCTTTGGAATGTCGAACACCACTTCACAGGGCCTCGCTGGTGACCATTATGGTATTTATGGAGGCAATATTCAGAGAAATTTCTTGATTGGTTTTGACCTAGATAAAAATGTGGTCTCCTTCAAGCCAACTAATTGCATAACCAATGGTGGTGGTACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

403

Amino Acids

44.03

Weight (kDa)

5.77

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 90 - 121 8.8e-07 Xylanase inhibitor N-terminal
TAXi_N PF14543 122 - 211 2.7e-18 Xylanase inhibitor N-terminal
Asp PF00026 123 - 390 5.1e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 233 - 391 1.5e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 1055
AccI GTMKAC 2 cut(s) 175, 199
AccII CGCG 1 cut(s) 690
AciI CCGC 1 cut(s) 690
AclWI GGATC 3 cut(s) 239, 596, 791
AcsI RAATTY 3 cut(s) 148, 569, 1126
AcuI CTGAAG 1 cut(s) 109
AdeI CACNNNGTG 1 cut(s) 835
AfaI GTAC 2 cut(s) 940, 1204
AfiI CCNNNNNNNGG 1 cut(s) 557
AgsI TTSAA 4 cut(s) 154, 776, 979, 1171
AluBI AGCT 2 cut(s) 230, 277
AluI AGCT 2 cut(s) 230, 277
Alw26I GTCTC 1 cut(s) 1168
AlwI GGATC 3 cut(s) 239, 596, 791
AoxI GGCC 2 cut(s) 294, 1078
ApeKI GCWGC 4 cut(s) 5, 92, 95, 327
ApoI RAATTY 3 cut(s) 148, 569, 1126
AseI ATTAAT 1 cut(s) 972
AspA2I CCTAGG 1 cut(s) 590
AspLEI GCGC 2 cut(s) 133, 460
AspS9I GGNCC 2 cut(s) 212, 1078
AsuC2I CCSGG 2 cut(s) 293, 833
AsuHPI GGTGA 4 cut(s) 665, 821, 914, 1100
AsuII TTCGAA 2 cut(s) 142, 875
AvaII GGWCC 1 cut(s) 212
AvrII CCTAGG 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 860
BbvI GCAGC 3 cut(s) 104, 107, 339
BccI CCATC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 589
BcnI CCSGG 2 cut(s) 293, 833
BcoDI GTCTC 1 cut(s) 1168
BfaI CTAG 3 cut(s) 39, 591, 1148
BfmI CTRYAG 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 1055
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 4 cut(s) 6, 93, 96, 328
BlnI CCTAGG 1 cut(s) 590
BlsI GCNGC 4 cut(s) 7, 94, 97, 329
Bme1390I CCNGG 2 cut(s) 293, 833
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 212, 1078
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 2 cut(s) 293, 833
BmsI GCATC 2 cut(s) 685, 939
BpiI GAAGAC 1 cut(s) 860
BpmI CTGGAG 1 cut(s) 579
Bpu14I TTCGAA 2 cut(s) 142, 875
BpuEI CTTGAG 1 cut(s) 801
BpuMI CCSGG 2 cut(s) 293, 833
BsaBI GATNNNNATC 2 cut(s) 264, 600
BsaI GGTCTC 1 cut(s) 1168
BsaJI CCNNGG 2 cut(s) 291, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse3DI GCAATG 3 cut(s) 164, 346, 674
Bse8I GATNNNNATC 2 cut(s) 264, 600
BseDI CCNNGG 2 cut(s) 291, 590
BseGI GGATG 1 cut(s) 700
BseJI GATNNNNATC 2 cut(s) 264, 600
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMI GCAATG 3 cut(s) 164, 346, 674
BseMII CTCAG 1 cut(s) 857
BseRI GAGGAG 1 cut(s) 531
BseXI GCAGC 3 cut(s) 104, 107, 339
Bsh1236I CGCG 1 cut(s) 690
BshFI GGCC 2 cut(s) 296, 1080
BsiSI CCGG 2 cut(s) 293, 832
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 1 cut(s) 1168
BsmFI GGGAC 1 cut(s) 775
BsnI GGCC 2 cut(s) 296, 1080
Bso31I GGTCTC 1 cut(s) 1168
Bsp119I TTCGAA 2 cut(s) 142, 875
Bsp143I GATC 5 cut(s) 244, 601, 621, 705, 783
BspACI CCGC 1 cut(s) 690
BspANI GGCC 2 cut(s) 296, 1080
BspCNI CTCAG 1 cut(s) 856
BspFNI CGCG 1 cut(s) 690
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 1055
BspPI GGATC 3 cut(s) 239, 596, 791
BspT104I TTCGAA 2 cut(s) 142, 875
BspTNI GGTCTC 1 cut(s) 1168
BsrDI GCAATG 3 cut(s) 164, 346, 674
BssECI CCNNGG 2 cut(s) 291, 590
BssMI GATC 5 cut(s) 244, 601, 621, 705, 783
BssT1I CCWWGG 1 cut(s) 590
Bst4CI ACNGT 3 cut(s) 173, 397, 868
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBI TTCGAA 2 cut(s) 142, 875
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 843
BstEII GGTNACC 1 cut(s) 1088
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 1 cut(s) 690
BstHHI GCGC 2 cut(s) 133, 460
BstKTI GATC 5 cut(s) 247, 604, 624, 708, 786
BstMAI GTCTC 1 cut(s) 1168
BstMBI GATC 5 cut(s) 244, 601, 621, 705, 783
BstMWI GCNNNNNNNGC 2 cut(s) 50, 554
BstPI GGTNACC 1 cut(s) 1088
BstSCI CCNGG 2 cut(s) 291, 831
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 690
BstV1I GCAGC 3 cut(s) 104, 107, 339
BstV2I GAAGAC 1 cut(s) 860
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 2 cut(s) 296, 1080
BtsCI GGATG 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 1055
Cac8I GCNNGC 1 cut(s) 353
CciI TCATGA 1 cut(s) 849
CfoI GCGC 2 cut(s) 133, 460
Cfr13I GGNCC 2 cut(s) 212, 1078
Csp6I GTAC 2 cut(s) 939, 1203
CspCI CAANNNNNGTGG 1 cut(s) 1180
CviAII CATG 1 cut(s) 850
CviQI GTAC 2 cut(s) 939, 1203
DdeI CTNAG 1 cut(s) 843
DpnI GATC 5 cut(s) 246, 603, 623, 707, 785
DpnII GATC 5 cut(s) 244, 601, 621, 705, 783
DraI TTTAAA 1 cut(s) 1038
DraIII CACNNNGTG 1 cut(s) 835
Eco130I CCWWGG 1 cut(s) 590
Eco31I GGTCTC 1 cut(s) 1168
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 1088
EcoO109I RGGNCCY 1 cut(s) 1078
EcoO65I GGTNACC 1 cut(s) 1088
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 590
FaeI CATG 1 cut(s) 853
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 775
FatI CATG 1 cut(s) 849
FauI CCCGC 1 cut(s) 683
FblI GTMKAC 2 cut(s) 175, 199
Fnu4HI GCNGC 4 cut(s) 6, 93, 96, 328
FokI GGATG 1 cut(s) 707
Fsp4HI GCNGC 4 cut(s) 6, 93, 96, 328
FspBI CTAG 3 cut(s) 39, 591, 1148
FspI TGCGCA 1 cut(s) 459
GlaI GCGC 2 cut(s) 132, 459
GluI GCNGC 4 cut(s) 6, 93, 96, 328
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 2 cut(s) 296, 1080
HapII CCGG 2 cut(s) 293, 832
HhaI GCGC 2 cut(s) 133, 460
Hin1II CATG 1 cut(s) 853
Hin6I GCGC 2 cut(s) 131, 458
HinP1I GCGC 2 cut(s) 131, 458
HincII GTYRAC 2 cut(s) 176, 200
HindII GTYRAC 2 cut(s) 176, 200
HinfI GANTC 5 cut(s) 683, 788, 872, 884, 946
HpaII CCGG 2 cut(s) 293, 832
HphI GGTGA 4 cut(s) 665, 821, 914, 1100
Hpy166II GTNNAC 4 cut(s) 176, 200, 669, 1002
Hpy188I TCNGA 3 cut(s) 632, 898, 1122
Hpy188III TCNNGA 5 cut(s) 215, 248, 818, 850, 1132
Hpy8I GTNNAC 4 cut(s) 176, 200, 669, 1002
Hpy99I CGWCG 2 cut(s) 204, 946
HpyAV CCTTC 4 cut(s) 307, 650, 710, 1177
HpyCH4III ACNGT 3 cut(s) 173, 397, 868
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 169, 930, 997, 1185
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 554
HpyF3I CTNAG 1 cut(s) 843
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 1 cut(s) 853
HspAI GCGC 2 cut(s) 131, 458
Kzo9I GATC 5 cut(s) 244, 601, 621, 705, 783
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 3 cut(s) 104, 107, 339
LweI GCATC 2 cut(s) 685, 939
MaeI CTAG 3 cut(s) 39, 591, 1148
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 4 cut(s) 397, 427, 920, 1088
MalI GATC 5 cut(s) 246, 603, 623, 707, 785
MboI GATC 5 cut(s) 244, 601, 621, 705, 783
MboII GAAGA 1 cut(s) 865
MfeI CAATTG 1 cut(s) 315
MlyI GAGTC 1 cut(s) 782
MnlI CCTC 9 cut(s) 144, 509, 512, 554, 774, 825, 928, 1091, 1103
MseI TTAA 6 cut(s) 404, 750, 972, 1037, 1043, 1210
MspI CCGG 2 cut(s) 293, 832
MspR9I CCNGG 2 cut(s) 293, 833
MunI CAATTG 1 cut(s) 315
MvnI CGCG 1 cut(s) 690
MwoI GCNNNNNNNGC 2 cut(s) 50, 554
NciI CCSGG 2 cut(s) 293, 833
NdeII GATC 5 cut(s) 244, 601, 621, 705, 783
NlaIII CATG 1 cut(s) 853
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 920, 1088
NsbI TGCGCA 1 cut(s) 459
NspV TTCGAA 2 cut(s) 142, 875
PagI TCATGA 1 cut(s) 849
PfeI GAWTC 4 cut(s) 683, 872, 884, 946
PkrI GCNGC 4 cut(s) 7, 94, 97, 329
PleI GAGTC 1 cut(s) 782
PpsI GAGTC 1 cut(s) 782
PshBI ATTAAT 1 cut(s) 972
PspEI GGTNACC 1 cut(s) 1088
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 212, 1078
RsaI GTAC 2 cut(s) 940, 1204
RsaNI GTAC 2 cut(s) 939, 1203
SalI GTCGAC 2 cut(s) 174, 198
SaqAI TTAA 6 cut(s) 404, 750, 972, 1037, 1043, 1210
SatI GCNGC 4 cut(s) 6, 93, 96, 328
Sau3AI GATC 5 cut(s) 244, 601, 621, 705, 783
Sau96I GGNCC 2 cut(s) 212, 1078
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 2 cut(s) 293, 833
SfaNI GCATC 2 cut(s) 685, 939
SfcI CTRYAG 1 cut(s) 372
SfuI TTCGAA 2 cut(s) 142, 875
SinI GGWCC 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 816
SmoI CTYRAG 1 cut(s) 816
SsiI CCGC 1 cut(s) 690
SspI AATATT 2 cut(s) 1017, 1117
SspMI CTAG 3 cut(s) 39, 591, 1148
StyD4I CCNGG 2 cut(s) 291, 831
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 3 cut(s) 173, 397, 868
TaiI ACGT 1 cut(s) 205
TfiI GAWTC 4 cut(s) 683, 872, 884, 946
Tru1I TTAA 6 cut(s) 404, 750, 972, 1037, 1043, 1210
Tru9I TTAA 6 cut(s) 404, 750, 972, 1037, 1043, 1210
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 2 cut(s) 920, 1088
TseI GCWGC 4 cut(s) 5, 92, 95, 327
Tsp45I GTSAC 2 cut(s) 920, 1088
TspDTI ATGAA 7 cut(s) 56, 287, 507, 838, 866, 880, 930
TspGWI ACGGA 3 cut(s) 271, 500, 735
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 212
VspI ATTAAT 1 cut(s) 972
XapI RAATTY 3 cut(s) 148, 569, 1126
XmaJI CCTAGG 1 cut(s) 590
XmiI GTMKAC 2 cut(s) 175, 199
XspI CTAG 3 cut(s) 39, 591, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.