RLG00000025733

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000230
Physical Location & Seq
Forward (+)
47941036 .. 47941720
685 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025733

Sequence Viewer

Length: 408 bp
ATGCCTGTGGTCAAGTTTTTGGAAGGCAACATGTTCTTGGACTCAGGAACACCGCCAACACTAATCCCACAAGATCTCTACGACCGGTTGGCGGCAGAAGTAAAGAACCAGATTGCAATGGCACCCATTGGAGGTGACCCGACTTTGGGATCTCAGCTGTGCTACAAGACTCAAATTAATCTCGAAGGGCCAATATTGACAGTGCATTTTAAGGGCGGTGCTAATGTGGTGTTAACACCAACACAGACCTTCATTCCGCCAAAAGATGGGGTTTGCTGCTTCGCAATGCAAGGCGTTGCTAGTGACGGTGGTATTATCGGAAACTTTGCTCAGTCAAATTTCTTGATCGGTTATGACCTTGAAAAAATGACAGTCTCATTCAAGCCAGCAGATTGCACAAACGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

136

Amino Acids

14.36

Weight (kDa)

4.68

Isoelectric Point (pI)

26.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 8 - 128 4.6e-19 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 266
AciI CCGC 4 cut(s) 53, 92, 216, 257
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 337
AfiI CCNNNNNNNGG 5 cut(s) 91, 131, 145, 146, 266
AflIII ACRYGT 1 cut(s) 30
AgeI ACCGGT 1 cut(s) 84
AgsI TTSAA 2 cut(s) 362, 382
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 337
AseI ATTAAT 1 cut(s) 177
AsiGI ACCGGT 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 146
BanI GGYRCC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 300
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 93, 277
BlsI GCNGC 2 cut(s) 94, 278
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 131, 145, 146, 266
Bse118I RCCGGY 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 123, 291
BseLI CCNNNNNNNGG 5 cut(s) 91, 131, 145, 146, 266
BseMI GCAATG 2 cut(s) 123, 291
BseMII CTCAG 3 cut(s) 57, 167, 344
BseXI GCAGC 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 121
BshTI ACCGGT 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 85
BsiSI CCGG 1 cut(s) 85
BslI CCNNNNNNNGG 5 cut(s) 91, 131, 145, 146, 266
BsmAI GTCTC 1 cut(s) 379
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 73, 149, 345
BspACI CCGC 4 cut(s) 53, 92, 216, 257
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 3 cut(s) 56, 166, 343
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 2 cut(s) 123, 291
BsrFI RCCGGY 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 84
BssMI GATC 3 cut(s) 73, 149, 345
Bst4CI ACNGT 3 cut(s) 202, 308, 373
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 3 cut(s) 43, 153, 330
BstEII GGTNACC 1 cut(s) 134
BstKTI GATC 3 cut(s) 76, 152, 348
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 3 cut(s) 73, 149, 345
BstMCI CGRYCG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 34
BstPI GGTNACC 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 2 cut(s) 73, 149
BstYI RGATCY 2 cut(s) 73, 149
BsuRI GGCC 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 188
CspAI ACCGGT 1 cut(s) 84
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 157, 190, 385
CviKI_1 RGCY 3 cut(s) 157, 190, 385
DdeI CTNAG 3 cut(s) 43, 153, 330
DpnI GATC 3 cut(s) 75, 151, 347
DpnII GATC 3 cut(s) 73, 149, 345
EciI GGCGGA 1 cut(s) 246
Eco91I GGTNACC 1 cut(s) 134
EcoO65I GGTNACC 1 cut(s) 134
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 354
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 93, 277
Fsp4HI GCNGC 2 cut(s) 93, 277
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 93, 277
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 85
Hin1II CATG 1 cut(s) 34
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 2 cut(s) 41, 169
HpaI GTTAAC 1 cut(s) 234
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 3 cut(s) 45, 182, 343
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 3 cut(s) 17, 179, 259
HpyCH4III ACNGT 3 cut(s) 202, 308, 373
HpyCH4V TGCA 4 cut(s) 116, 205, 289, 396
HpyF3I CTNAG 3 cut(s) 43, 153, 330
Hsp92II CATG 1 cut(s) 34
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 73, 149, 345
LpnPI CCDG 5 cut(s) 18, 30, 98, 122, 399
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 134, 302
MalI GATC 3 cut(s) 75, 151, 347
MboI GATC 3 cut(s) 73, 149, 345
MflI RGATCY 2 cut(s) 73, 149
MluCI AATT 2 cut(s) 174, 337
MlyI GAGTC 2 cut(s) 35, 163
MnlI CCTC 1 cut(s) 125
MseI TTAA 3 cut(s) 177, 210, 233
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 1 cut(s) 85
NdeII GATC 3 cut(s) 73, 149, 345
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 2 cut(s) 134, 302
NspI RCATGY 1 cut(s) 34
PciI ACATGT 1 cut(s) 30
PflMI CCANNNNNTGG 1 cut(s) 266
PinAI ACCGGT 1 cut(s) 84
PkrI GCNGC 2 cut(s) 94, 278
PleI GAGTC 2 cut(s) 35, 163
PpsI GAGTC 2 cut(s) 35, 163
PscI ACATGT 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 177
PspEI GGTNACC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 73, 149
PvuII CAGCTG 1 cut(s) 157
SaqAI TTAA 3 cut(s) 177, 210, 233
SatI GCNGC 2 cut(s) 93, 277
Sau3AI GATC 3 cut(s) 73, 149, 345
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 2 cut(s) 35, 163
SetI ASST 4 cut(s) 136, 159, 251, 360
Sse9I AATT 2 cut(s) 174, 337
SsiI CCGC 4 cut(s) 53, 92, 216, 257
SspI AATATT 1 cut(s) 195
SspMI CTAG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 202, 308, 373
TaqI TCGA 1 cut(s) 183
TasI AATT 2 cut(s) 174, 337
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 177, 210, 233
Tru9I TTAA 3 cut(s) 177, 210, 233
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 2 cut(s) 134, 302
TseI GCWGC 1 cut(s) 276
Tsp45I GTSAC 2 cut(s) 134, 302
TspDTI ATGAA 1 cut(s) 241
TspRI CASTG 1 cut(s) 207
Van91I CCANNNNNTGG 1 cut(s) 266
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 34
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.