Rroxscaffold_6G00428250

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000230
Physical Location & Seq
Forward (+)
48706494 .. 48709431
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428250.1

Sequence Viewer

Length: 642 bp
ATGTTGGAGGAAAAAAATTCTCTCATTGCTTCGTGGCAGATCCCAATATTGAAAGCAAGATCTATTTCGGGAACGGAAGTTTTGGGTGAAGTTTTGGGTGAAGGGGTACTGACAGAACCTATGGCAGAACCAAACGGGGGTTATACTTTGACAATATCAGGAATTACCATTGAAAATGACTTTGTTCCTTTTAACTCAACTGGGACATTGCTCAAGAAAGCTAACATGCTGGTTGACTCAGGTACACCTCTGTCACGTTTACCACAAGACTTTTTTGACCGAGTGATAACTCAGCTAAACAACACAGTTAAATTAGAGTCATTCATGCAAAAAGGAGGTGAATTAAGTAACATTTGCTTCAATTACACGACGCTTCCAAAATTACCAACAGTGGCTTTAGAGTTTGAGAGTGGTGGAAAATTGCAGTTGAATGAGAACCAATTATTTCAAATAGACGAAAAGCGCAAGGCGTTTTGCTTTATGATGATGAACAGCACTTCTGATTTTATGATTTTTGGAGGTACTCTTCAAACAGATTTCTTGATTGGTTTTGACCTAGATAGAAAAGTGAAACTTTGCAGTGAATTGAAAGTTACTGATGCTTCATCTACAAGATGTGGAAATTCTACTTCTGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

213

Amino Acids

23.49

Weight (kDa)

4.82

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 41 - 188 1.8e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 48 - 189 1.7e-18 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 2 cut(s) 16, 622
AfaI GTAC 3 cut(s) 108, 244, 523
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 7 cut(s) 52, 173, 361, 430, 449, 530, 589
AluBI AGCT 2 cut(s) 221, 295
AluI AGCT 2 cut(s) 221, 295
AlwI GGATC 1 cut(s) 34
ApoI RAATTY 2 cut(s) 16, 622
AspLEI GCGC 1 cut(s) 465
AsuHPI GGTGA 3 cut(s) 98, 110, 350
BfaI CTAG 1 cut(s) 557
BglII AGATCT 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 589
BmuI ACTGGG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 2 cut(s) 24, 206
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 2 cut(s) 24, 206
BseMII CTCAG 2 cut(s) 252, 305
BseNI ACTGG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 39, 59
BspCNI CTCAG 2 cut(s) 251, 304
BspPI GGATC 1 cut(s) 34
BsrDI GCAATG 2 cut(s) 24, 206
BsrI ACTGG 1 cut(s) 205
BssMI GATC 2 cut(s) 39, 59
Bst4CI ACNGT 2 cut(s) 307, 391
Bst6I CTCTTC 1 cut(s) 531
BstDEI CTNAG 2 cut(s) 238, 291
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 2 cut(s) 42, 62
BstMBI GATC 2 cut(s) 39, 59
BstNSI RCATGY 1 cut(s) 229
BstX2I RGATCY 2 cut(s) 39, 59
BstYI RGATCY 2 cut(s) 39, 59
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 396, 586
CfoI GCGC 1 cut(s) 465
CseI GACGC 1 cut(s) 379
Csp6I GTAC 3 cut(s) 107, 243, 522
CviAII CATG 2 cut(s) 226, 325
CviJI RGCY 3 cut(s) 221, 295, 395
CviKI_1 RGCY 3 cut(s) 221, 295, 395
CviQI GTAC 3 cut(s) 107, 243, 522
DdeI CTNAG 2 cut(s) 238, 291
DpnI GATC 2 cut(s) 41, 61
DpnII GATC 2 cut(s) 39, 59
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
FaeI CATG 2 cut(s) 229, 328
FaiI YATR 7 cut(s) 122, 144, 227, 326, 482, 509, 640
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 1 cut(s) 217
FatI CATG 2 cut(s) 225, 324
FspBI CTAG 1 cut(s) 557
GlaI GCGC 1 cut(s) 464
HgaI GACGC 1 cut(s) 379
HhaI GCGC 1 cut(s) 465
Hin1II CATG 2 cut(s) 229, 328
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 2 cut(s) 236, 317
HphI GGTGA 3 cut(s) 98, 110, 350
Hpy166II GTNNAC 3 cut(s) 235, 245, 260
Hpy188I TCNGA 1 cut(s) 502
Hpy188III TCNNGA 4 cut(s) 69, 159, 214, 541
Hpy8I GTNNAC 3 cut(s) 235, 245, 260
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 307, 391
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 328, 424, 579
HpyF3I CTNAG 2 cut(s) 238, 291
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 2 cut(s) 229, 328
HspAI GCGC 1 cut(s) 463
Kzo9I GATC 2 cut(s) 39, 59
LpnPI CCDG 4 cut(s) 144, 186, 215, 225
LweI GCATC 1 cut(s) 589
MaeI CTAG 1 cut(s) 557
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 3 cut(s) 252, 347, 592
MalI GATC 2 cut(s) 41, 61
MboI GATC 2 cut(s) 39, 59
MboII GAAGA 1 cut(s) 518
MflI RGATCY 2 cut(s) 39, 59
MlyI GAGTC 2 cut(s) 230, 326
MnlI CCTC 3 cut(s) 258, 329, 512
MseI TTAA 3 cut(s) 192, 309, 344
NdeII GATC 2 cut(s) 39, 59
NlaIII CATG 2 cut(s) 229, 328
NmuCI GTSAC 1 cut(s) 252
NspI RCATGY 1 cut(s) 229
PleI GAGTC 2 cut(s) 230, 325
PpsI GAGTC 2 cut(s) 230, 325
PsuI RGATCY 2 cut(s) 39, 59
RsaI GTAC 3 cut(s) 108, 244, 523
RsaNI GTAC 3 cut(s) 107, 243, 522
SaqAI TTAA 3 cut(s) 192, 309, 344
Sau3AI GATC 2 cut(s) 39, 59
SchI GAGTC 2 cut(s) 230, 326
SetI ASST 9 cut(s) 121, 223, 244, 250, 259, 297, 340, 523, 558
SfaNI GCATC 1 cut(s) 589
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SspI AATATT 1 cut(s) 48
SspMI CTAG 1 cut(s) 557
TaaI ACNGT 2 cut(s) 307, 391
TaiI ACGT 1 cut(s) 259
TaqII GACCGA 1 cut(s) 294
Tru1I TTAA 3 cut(s) 192, 309, 344
Tru9I TTAA 3 cut(s) 192, 309, 344
TscAI CASTG 2 cut(s) 396, 586
TseFI GTSAC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 3 cut(s) 313, 503, 594
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 396, 586
XapI RAATTY 2 cut(s) 16, 622
XceI RCATGY 1 cut(s) 229
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.