FvH4_6g02690

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000230
Physical Location & Seq
Forward (+)
1539271 .. 1540422
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02690.t1

Sequence Viewer

Length: 1152 bp
ATGAGAACCGATGAGACGAGTGGCGAGCATATTATGAAGTTCTCAATGGGAACCCCGCCTATAGATATTTATGCAATTGCTGATACAGGTAGCGATCTATTATGGACTCAATGTCAGCCATGTTTTCTTTGCTACAAGAGCAAACATGCTTTGTTTGATCGCAGAAAATCCTCAACGTTTAGGAACATTACTTGTGGTGCAAGGGAATGTAGACTTGTCGCCGAGAGGAAACCTGCAAACTATCCACCAAACTATTGTAGTGAAGATCATGAAAAACCTTGTGTTTACCATTACAGTTATGCAGACGAGTCATACTCCGAAGGTTTATTAGTTAAAGAAACAATTACCATGGCATCCACAACAGGTGTGGTTGTAGCCGTAGAAGATATCATCGTGGGGTGTGGGATTAAGAACGATGTTGGTCATAATTCTGCAACAAGAAATGAAATGGGAATGATTGGGTTTGGACGTGGACCCTTGTCATTTGTTTCTCAAATTGCTCCCTATGTTGGAGGCAATAGATTCTCTCATTGTTTGGTTCCTGCAAGTACAGATCCGATAATTGAAAGCAAGATCTATTTCGGTAATGGTAGTGAAGTTTTGGGTGAAGGGGTGGTTTCTACACCATTGGTTGATACAAAAGAATTCTCAAACAACTACATTGTGATAGCAGAAGGAATCACAGTTGGGAATGAATTTGTTTCATTTACAGAAGAAACAATGGATATGAAATATAAGATGGTAGTCGACTCAGGCACACCTTTGTCTATTGTGCCTCGACATATTTTTGACCCAGTAATAACTCTAGTGAAGAAGATGGTTGATCCGAAATTGGAGCCGATCGTAGTATTTGAGGAGGAAATAAATTTGACAAGACTATGCTTGAACTCGATGACAATTCCAGAAGAACCAAAAGTGACCATTCATTTCGAGGGTGGTGGCAAACTGCAGCTAATGGCAGACCAACTATTTTACAATGAGCCAGAGTATGACAATAGAGTTTGTTTTGCAATGGTCTACAAAGATGTGGAAGACGTTACGTCGGAGAATTATGGGTTCTTTGGAGGCCATTTTCAGGGAAATTTGTTGGTTGGGTTTGACATGGATAAAAAAGTGGCATCCTTCAAGCCAACTAATTGCCTAAACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

384

Amino Acids

42.68

Weight (kDa)

4.99

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 11 - 196 4e-45 Xylanase inhibitor N-terminal
Asp PF00026 98 - 374 2.1e-06 Eukaryotic aspartyl protease
TAXi_C PF14541 219 - 376 4.6e-15 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AccI GTMKAC 3 cut(s) 211, 747, 1017
AciI CCGC 1 cut(s) 56
AclI AACGTT 1 cut(s) 176
AclWI GGATC 2 cut(s) 548, 818
AcsI RAATTY 4 cut(s) 644, 695, 865, 1081
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 2 cut(s) 509, 1075
AgsI TTSAA 3 cut(s) 566, 886, 1126
AhdI GACNNNNNGTC 2 cut(s) 111, 1039
AjiI CACGTC 1 cut(s) 470
AluBI AGCT 1 cut(s) 952
AluI AGCT 1 cut(s) 952
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 2 cut(s) 548, 818
AoxI GGCC 1 cut(s) 1066
ApeKI GCWGC 1 cut(s) 949
ApoI RAATTY 4 cut(s) 644, 695, 865, 1081
AspS9I GGNCC 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 617
AvaII GGWCC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 1038
BbvI GCAGC 1 cut(s) 961
BccI CCATC 2 cut(s) 733, 811
BceAI ACGGC 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 2 cut(s) 806, 1150
BfmI CTRYAG 2 cut(s) 60, 947
BfuAI ACCTGC 1 cut(s) 241
BglII AGATCT 1 cut(s) 573
BisI GCNGC 1 cut(s) 950
BlsI GCNGC 1 cut(s) 951
Bme18I GGWCC 1 cut(s) 473
BmeRI GACNNNNNGTC 2 cut(s) 111, 1039
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 4 cut(s) 52, 475, 540, 837
BmrI ACTGGG 1 cut(s) 788
BmsI GCATC 2 cut(s) 362, 1127
BmuI ACTGGG 1 cut(s) 788
BoxI GACNNNNGTC 1 cut(s) 478
BpiI GAAGAC 1 cut(s) 1038
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BsaJI CCNNGG 1 cut(s) 348
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 1075
Bse1I ACTGG 1 cut(s) 794
Bse3DI GCAATG 1 cut(s) 1017
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 353, 1118
BseLI CCNNNNNNNGG 2 cut(s) 509, 1075
BseMI GCAATG 1 cut(s) 1017
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 1 cut(s) 794
BseRI GAGGAG 1 cut(s) 869
BseXI GCAGC 1 cut(s) 961
Bsh1285I CGRYCG 1 cut(s) 843
BshFI GGCC 1 cut(s) 1068
BsiEI CGRYCG 1 cut(s) 843
BslI CCNNNNNNNGG 2 cut(s) 509, 1075
BsmAI GTCTC 1 cut(s) 8
BsmBI CGTCTC 1 cut(s) 8
BsnI GGCC 1 cut(s) 1068
Bsp143I GATC 7 cut(s) 94, 157, 265, 553, 573, 823, 840
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 1068
BspCNI CTCAG 1 cut(s) 764
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 4 cut(s) 52, 475, 540, 837
BspMAI CTGCAG 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 2 cut(s) 548, 818
BsrDI GCAATG 1 cut(s) 1017
BsrI ACTGG 1 cut(s) 794
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 7 cut(s) 94, 157, 265, 553, 573, 823, 840
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 296, 685
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 751
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 353, 1118
BstKTI GATC 7 cut(s) 97, 160, 268, 556, 576, 826, 843
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 7 cut(s) 94, 157, 265, 553, 573, 823, 840
BstMCI CGRYCG 1 cut(s) 843
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 149
BstPAI GACNNNNGTC 1 cut(s) 478
BstSFI CTRYAG 2 cut(s) 60, 947
BstV1I GCAGC 1 cut(s) 961
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 2 cut(s) 553, 573
BstYI RGATCY 2 cut(s) 553, 573
BsuRI GGCC 1 cut(s) 1068
BtgI CCRYGG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 2 cut(s) 353, 1118
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 549
CspCI CAANNNNNGTGG 2 cut(s) 348, 383
CviAII CATG 5 cut(s) 120, 146, 269, 349, 1102
CviJI RGCY 7 cut(s) 118, 377, 838, 952, 982, 1068, 1129
CviKI_1 RGCY 7 cut(s) 118, 377, 838, 952, 982, 1068, 1129
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 1 cut(s) 751
DpnI GATC 7 cut(s) 96, 159, 267, 555, 575, 825, 842
DpnII GATC 7 cut(s) 94, 157, 265, 553, 573, 823, 840
DriI GACNNNNNGTC 2 cut(s) 111, 1039
Eam1105I GACNNNNNGTC 2 cut(s) 111, 1039
Eco130I CCWWGG 1 cut(s) 348
Eco32I GATATC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 644
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 8
FaeI CATG 5 cut(s) 123, 149, 272, 352, 1105
FatI CATG 5 cut(s) 119, 145, 268, 348, 1101
FauI CCCGC 1 cut(s) 63
FblI GTMKAC 3 cut(s) 211, 747, 1017
Fnu4HI GCNGC 1 cut(s) 950
FokI GGATG 2 cut(s) 340, 1105
Fsp4HI GCNGC 1 cut(s) 950
FspBI CTAG 2 cut(s) 806, 1150
GluI GCNGC 1 cut(s) 950
HaeIII GGCC 1 cut(s) 1068
Hin1II CATG 5 cut(s) 123, 149, 272, 352, 1105
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 5 cut(s) 106, 308, 522, 678, 749
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 5 cut(s) 212, 286, 473, 748, 1018
Hpy188I TCNGA 4 cut(s) 319, 558, 828, 1045
Hpy188III TCNNGA 2 cut(s) 269, 902
Hpy8I GTNNAC 5 cut(s) 212, 286, 473, 748, 1018
Hpy99I CGWCG 1 cut(s) 1045
HpyAV CCTTC 4 cut(s) 314, 602, 668, 1132
HpyCH4III ACNGT 2 cut(s) 296, 685
HpyCH4IV ACGT 4 cut(s) 176, 469, 1035, 1040
HpyCH4V TGCA 8 cut(s) 74, 200, 236, 302, 434, 545, 949, 1010
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 751
HpySE526I ACGT 4 cut(s) 176, 469, 1035, 1040
Hsp92II CATG 5 cut(s) 123, 149, 272, 352, 1105
Kzo9I GATC 7 cut(s) 94, 157, 265, 553, 573, 823, 840
LmnI GCTCC 2 cut(s) 505, 835
LpnPI CCDG 9 cut(s) 72, 246, 348, 555, 738, 807, 915, 996, 1061
Lsp1109I GCAGC 1 cut(s) 961
LweI GCATC 2 cut(s) 362, 1127
MaeI CTAG 2 cut(s) 806, 1150
MaeII ACGT 4 cut(s) 176, 469, 1035, 1040
MaeIII GTNAC 2 cut(s) 916, 1036
MalI GATC 7 cut(s) 96, 159, 267, 555, 575, 825, 842
MboI GATC 7 cut(s) 94, 157, 265, 553, 573, 823, 840
MboII GAAGA 7 cut(s) 275, 395, 725, 823, 826, 917, 1043
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 2 cut(s) 553, 573
MlyI GAGTC 3 cut(s) 100, 317, 743
MmeI TCCRAC 2 cut(s) 490, 1023
MnlI CCTC 8 cut(s) 181, 219, 506, 786, 847, 850, 925, 1058
MseI TTAA 2 cut(s) 333, 408
MunI CAATTG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 138
NcoI CCATGG 1 cut(s) 348
NdeII GATC 7 cut(s) 94, 157, 265, 553, 573, 823, 840
NlaIII CATG 5 cut(s) 123, 149, 272, 352, 1105
NlaIV GGNNCC 4 cut(s) 52, 475, 540, 837
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 916
NspI RCATGY 1 cut(s) 149
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 2 cut(s) 522, 678
PkrI GCNGC 1 cut(s) 951
Ple19I CGATCG 1 cut(s) 843
PleI GAGTC 3 cut(s) 100, 316, 743
PpsI GAGTC 3 cut(s) 100, 316, 743
PshAI GACNNNNGTC 1 cut(s) 478
Psp1406I AACGTT 1 cut(s) 176
PspN4I GGNNCC 4 cut(s) 52, 475, 540, 837
PspPI GGNCC 1 cut(s) 473
PstI CTGCAG 1 cut(s) 951
PsuI RGATCY 2 cut(s) 553, 573
PvuI CGATCG 1 cut(s) 843
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SalI GTCGAC 1 cut(s) 746
SaqAI TTAA 2 cut(s) 333, 408
SatI GCNGC 1 cut(s) 950
Sau3AI GATC 7 cut(s) 94, 157, 265, 553, 573, 823, 840
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 3 cut(s) 100, 317, 743
SfaNI GCATC 2 cut(s) 362, 1127
SfcI CTRYAG 2 cut(s) 60, 947
SinI GGWCC 1 cut(s) 473
SsiI CCGC 1 cut(s) 56
SspMI CTAG 2 cut(s) 806, 1150
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 296, 685
TaiI ACGT 4 cut(s) 179, 472, 1038, 1043
TaqI TCGA 4 cut(s) 747, 778, 890, 930
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 2 cut(s) 522, 678
Tru1I TTAA 2 cut(s) 333, 408
Tru9I TTAA 2 cut(s) 333, 408
TseFI GTSAC 1 cut(s) 916
TseI GCWGC 1 cut(s) 949
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 7 cut(s) 50, 285, 459, 693, 708, 743, 914
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 4 cut(s) 644, 695, 865, 1081
XceI RCATGY 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XmiI GTMKAC 3 cut(s) 211, 747, 1017
XspI CTAG 2 cut(s) 806, 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.