Rh6CG008800

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000230
Physical Location & Seq
Reverse (-)
1042150 .. 1044146
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG008800.1

Sequence Viewer

Length: 1143 bp
ATGGGTCCAGACACGCCGGGATCACCAATGAAAATCGATCCAAAAAGTGGCGAACATATTATGAAGTTCTCAATGGGAACCCCACCCTTTGATATTTATGCAATTGCTGATACAGGCAGTGATCTACTATGGACGCAATGCCAACCATGTAAAGCTTGCTACAAGACCAACTTTGACCTTTTTGATCCGTTTAAATCCTCAACTTATAGGAACATTACTTGTCGTGCAAAGGACTGTAGACTCGTCGCCAGTCTTAGACCACAGAACTATCCACCAAACTTTTGTAAAGAAAATCCTAAGGGACCTTGCTTGTATATGTACGAGTATCTGGACACGTCATCCTCGACCGGTGAATTGGCTAAAGAAACAGTTACCTTGACATCTACTACAGGTAAAGTTGCATCCCTAAAAGATATTGTCGTTGGTTGTGGGCATGAGAACTATGAAGTTGGTTCAACTGGAAATGAAATGGGAATTATTGGGCTTGGACGTGGGCCCTTGTCATTTGTTTCACAAATTGCTCCCTATGTTGGAGGCAAAAGATTCTCTCATTGCTTGGTGCCAGATCCCGAAATCGAAAGCAAGATATATTTCGGCAACGGGAGTGAAGTTTTGGGTGAAGGGGTGCTAACAGCACCTTTGGTTGATAGACGACCAGACGAGAGTAACTATTTTGTAACAGTACGAGGAGTTACTATTGAAAATGGCTTTGTTCCTTTTAACTCAACTGGGACATTGCTTAAGAAAGGTAACATGGTGGTCGACTCAGGTACGCCTAAGACACGTTTACCAAACGACTTTTTTGAAAGGGTGATAACTCAGCTAAGAGAGACAGTTAAATTGGAGTCCTTCATACATGCACCGCATAATTTAAGTACCATTTGCTTCAATTACACGACGCTTCCAAAATTACCAACAATGGCTTTAGAATTTGAGGGTGGTGAAAAATTGTCGTTGAATGAGGACGAATTATTTAAAAAATATGAAGAGGACAAGGCATTTTGCTTTATGATGGTGAACAGCACTGCAGATTATGGTATTTTTGGAGGTACTCTTCAGACAAATTTCTTGATTGGTTTTGACTTGGATAGAAAAGTGGTATCCTTCAAGCCAACTAATTGCGCAGACTTTAACAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

380

Amino Acids

42.06

Weight (kDa)

5.55

Isoelectric Point (pI)

24.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 20 - 200 2.5e-48 Xylanase inhibitor N-terminal
Asp PF00026 108 - 369 1.2e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 223 - 370 1e-22 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1123
AccB1I GGYRCC 1 cut(s) 559
AccB7I CCANNNNNTGG 1 cut(s) 47
AccI GTMKAC 2 cut(s) 238, 762
AciI CCGC 1 cut(s) 863
AclWI GGATC 4 cut(s) 28, 32, 179, 560
AcsI RAATTY 2 cut(s) 929, 1063
AcuI CTGAAG 1 cut(s) 1040
AfaI GTAC 5 cut(s) 320, 684, 772, 877, 1051
AfiI CCNNNNNNNGG 2 cut(s) 47, 530
AflII CTTAAG 1 cut(s) 740
AflIII ACRYGT 2 cut(s) 333, 782
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 6 cut(s) 456, 701, 806, 889, 958, 1108
AjiI CACGTC 2 cut(s) 336, 491
AluBI AGCT 2 cut(s) 155, 823
AluI AGCT 2 cut(s) 155, 823
Alw26I GTCTC 1 cut(s) 824
AlwI GGATC 4 cut(s) 28, 32, 179, 560
AoxI GGCC 1 cut(s) 494
ApaI GGGCCC 1 cut(s) 498
ApoI RAATTY 2 cut(s) 929, 1063
AsiGI ACCGGT 1 cut(s) 347
AspLEI GCGC 1 cut(s) 1124
AspS9I GGNCC 4 cut(s) 5, 302, 494, 495
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 6 cut(s) 15, 362, 629, 823, 953, 1027
AvaII GGWCC 2 cut(s) 5, 302
AxyI CCTNAGG 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 498
BanI GGYRCC 1 cut(s) 559
BanII GRGCYC 1 cut(s) 498
BccI CCATC 1 cut(s) 1006
BciVI GTATCC 1 cut(s) 1111
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 824
BfmI CTRYAG 3 cut(s) 235, 387, 1026
BfrI CTTAAG 1 cut(s) 740
BfuI GTATCC 1 cut(s) 1111
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 2 cut(s) 5, 302
BmgBI CACGTC 2 cut(s) 336, 491
BmgT120I GGNCC 4 cut(s) 5, 302, 494, 495
BmiI GGNNCC 5 cut(s) 6, 79, 303, 496, 561
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 1 cut(s) 410
BmuI ACTGGG 1 cut(s) 738
BpuMI CCSGG 1 cut(s) 18
Bsa29I ATCGAT 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 530
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 3 cut(s) 249, 463, 733
Bse21I CCTNAGG 1 cut(s) 297
Bse3DI GCAATG 3 cut(s) 143, 550, 734
BseCI ATCGAT 1 cut(s) 36
BseGI GGATG 2 cut(s) 338, 401
BseLI CCNNNNNNNGG 2 cut(s) 47, 530
BseMI GCAATG 3 cut(s) 143, 550, 734
BseMII CTCAG 2 cut(s) 780, 833
BseNI ACTGG 3 cut(s) 249, 463, 733
BseRI GAGGAG 1 cut(s) 702
BseSI GKGCMC 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 496
BshNI GGYRCC 1 cut(s) 559
BshTI ACCGGT 1 cut(s) 347
BshVI ATCGAT 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 348
BsiSI CCGG 2 cut(s) 17, 348
BslFI GGGAC 2 cut(s) 315, 745
BslI CCNNNNNNNGG 2 cut(s) 47, 530
BsmAI GTCTC 1 cut(s) 824
BsmFI GGGAC 2 cut(s) 315, 745
BsnI GGCC 1 cut(s) 496
Bsp120I GGGCCC 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 5 cut(s) 20, 37, 121, 184, 565
BspACI CCGC 1 cut(s) 863
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 2 cut(s) 779, 832
BspDI ATCGAT 1 cut(s) 36
BspLI GGNNCC 5 cut(s) 6, 79, 303, 496, 561
BspMAI CTGCAG 1 cut(s) 1030
BspPI GGATC 4 cut(s) 28, 32, 179, 560
BspT107I GGYRCC 1 cut(s) 559
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 3 cut(s) 143, 550, 734
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 3 cut(s) 249, 463, 733
BssAI RCCGGY 1 cut(s) 347
BssMI GATC 5 cut(s) 20, 37, 121, 184, 565
Bst4CI ACNGT 4 cut(s) 236, 370, 682, 835
Bst6I CTCTTC 2 cut(s) 981, 1059
BstAFI CTTAAG 1 cut(s) 740
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 6 cut(s) 254, 297, 766, 777, 819, 824
BstF5I GGATG 2 cut(s) 338, 401
BstHHI GCGC 1 cut(s) 1124
BstKTI GATC 5 cut(s) 23, 40, 124, 187, 568
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 5 cut(s) 20, 37, 121, 184, 565
BstMCI CGRYCG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 860
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 3 cut(s) 235, 387, 1026
BstSLI GKGCMC 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
Bsu15I ATCGAT 1 cut(s) 36
Bsu36I CCTNAGG 1 cut(s) 297
BsuI GTATCC 1 cut(s) 1111
BsuRI GGCC 1 cut(s) 496
BsuTUI ATCGAT 1 cut(s) 36
BtrI CACGTC 2 cut(s) 336, 491
BtsCI GGATG 2 cut(s) 338, 401
BtsI GCAGTG 2 cut(s) 124, 1023
BtsIMutI CAGTG 2 cut(s) 124, 1023
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 1124
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 4 cut(s) 5, 302, 494, 495
ClaI ATCGAT 1 cut(s) 36
CseI GACGC 2 cut(s) 142, 907
Csp6I GTAC 5 cut(s) 319, 683, 771, 876, 1050
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 4 cut(s) 147, 434, 754, 857
CviJI RGCY 8 cut(s) 155, 359, 484, 496, 708, 823, 923, 1111
CviKI_1 RGCY 8 cut(s) 155, 359, 484, 496, 708, 823, 923, 1111
CviQI GTAC 5 cut(s) 319, 683, 771, 876, 1050
DdeI CTNAG 6 cut(s) 254, 297, 766, 777, 819, 824
DpnI GATC 5 cut(s) 22, 39, 123, 186, 567
DpnII GATC 5 cut(s) 20, 37, 121, 184, 565
DraI TTTAAA 2 cut(s) 193, 976
Eam1104I CTCTTC 2 cut(s) 981, 1059
EarI CTCTTC 2 cut(s) 981, 1059
Eco24I GRGCYC 1 cut(s) 498
Eco47I GGWCC 2 cut(s) 5, 302
Eco57I CTGAAG 1 cut(s) 1040
Eco81I CCTNAGG 1 cut(s) 297
EcoO109I RGGNCCY 2 cut(s) 302, 495
EcoT38I GRGCYC 1 cut(s) 498
FaeI CATG 4 cut(s) 150, 437, 757, 860
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 2 cut(s) 315, 745
FatI CATG 4 cut(s) 146, 433, 753, 856
FblI GTMKAC 2 cut(s) 238, 762
FokI GGATG 2 cut(s) 325, 388
FriOI GRGCYC 1 cut(s) 498
FspI TGCGCA 1 cut(s) 1123
GlaI GCGC 1 cut(s) 1123
HaeIII GGCC 1 cut(s) 496
HapII CCGG 2 cut(s) 17, 348
HgaI GACGC 2 cut(s) 142, 907
HhaI GCGC 1 cut(s) 1124
Hin1II CATG 4 cut(s) 150, 437, 757, 860
Hin6I GCGC 1 cut(s) 1122
HinP1I GCGC 1 cut(s) 1122
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 4 cut(s) 240, 543, 764, 845
HpaII CCGG 2 cut(s) 17, 348
HphI GGTGA 6 cut(s) 15, 362, 629, 823, 953, 1027
Hpy166II GTNNAC 4 cut(s) 239, 763, 788, 1018
Hpy188I TCNGA 1 cut(s) 1059
Hpy188III TCNNGA 4 cut(s) 8, 329, 569, 1069
Hpy8I GTNNAC 4 cut(s) 239, 763, 788, 1018
Hpy99I CGWCG 2 cut(s) 248, 901
HpyAV CCTTC 3 cut(s) 614, 859, 1114
HpyCH4III ACNGT 4 cut(s) 236, 370, 682, 835
HpyCH4IV ACGT 3 cut(s) 335, 490, 784
HpyCH4V TGCA 5 cut(s) 101, 227, 401, 860, 1028
HpyF3I CTNAG 6 cut(s) 254, 297, 766, 777, 819, 824
HpySE526I ACGT 3 cut(s) 335, 490, 784
Hsp92II CATG 4 cut(s) 150, 437, 757, 860
HspAI GCGC 1 cut(s) 1122
Kzo9I GATC 5 cut(s) 20, 37, 121, 184, 565
LmnI GCTCC 1 cut(s) 526
LweI GCATC 1 cut(s) 410
MaeII ACGT 3 cut(s) 335, 490, 784
MaeIII GTNAC 5 cut(s) 370, 665, 676, 691, 749
MalI GATC 5 cut(s) 22, 39, 123, 186, 567
MboI GATC 5 cut(s) 20, 37, 121, 184, 565
MboII GAAGA 2 cut(s) 998, 1046
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 498
MlyI GAGTC 3 cut(s) 234, 758, 854
MmeI TCCRAC 1 cut(s) 511
MnlI CCTC 8 cut(s) 208, 352, 527, 680, 928, 955, 982, 1040
MseI TTAA 7 cut(s) 192, 720, 741, 837, 872, 975, 1131
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 2 cut(s) 17, 348
MspR9I CCNGG 1 cut(s) 18
MunI CAATTG 1 cut(s) 102
NciI CCSGG 1 cut(s) 18
NdeII GATC 5 cut(s) 20, 37, 121, 184, 565
NlaIII CATG 4 cut(s) 150, 437, 757, 860
NlaIV GGNNCC 5 cut(s) 6, 79, 303, 496, 561
NsbI TGCGCA 1 cut(s) 1123
NspI RCATGY 1 cut(s) 860
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PfeI GAWTC 1 cut(s) 543
PflMI CCANNNNNTGG 1 cut(s) 47
PinAI ACCGGT 1 cut(s) 347
PleI GAGTC 3 cut(s) 234, 758, 853
PpsI GAGTC 3 cut(s) 234, 758, 853
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
PspN4I GGNNCC 5 cut(s) 6, 79, 303, 496, 561
PspOMI GGGCCC 1 cut(s) 494
PspPI GGNCC 4 cut(s) 5, 302, 494, 495
PspPPI RGGWCCY 1 cut(s) 302
PstI CTGCAG 1 cut(s) 1030
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 5 cut(s) 320, 684, 772, 877, 1051
RsaNI GTAC 5 cut(s) 319, 683, 771, 876, 1050
SalI GTCGAC 1 cut(s) 761
SaqAI TTAA 7 cut(s) 192, 720, 741, 837, 872, 975, 1131
Sau3AI GATC 5 cut(s) 20, 37, 121, 184, 565
Sau96I GGNCC 4 cut(s) 5, 302, 494, 495
SchI GAGTC 3 cut(s) 234, 758, 854
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 1 cut(s) 410
SfcI CTRYAG 3 cut(s) 235, 387, 1026
SinI GGWCC 2 cut(s) 5, 302
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
SsiI CCGC 1 cut(s) 863
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 4 cut(s) 236, 370, 682, 835
TaiI ACGT 3 cut(s) 338, 493, 787
TaqI TCGA 4 cut(s) 36, 344, 576, 762
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 7 cut(s) 192, 720, 741, 837, 872, 975, 1131
Tru9I TTAA 7 cut(s) 192, 720, 741, 837, 872, 975, 1131
TscAI CASTG 2 cut(s) 124, 1030
TspDTI ATGAA 6 cut(s) 44, 77, 459, 480, 841, 999
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 124, 1030
Van91I CCANNNNNTGG 1 cut(s) 47
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 5, 302
XapI RAATTY 2 cut(s) 929, 1063
XceI RCATGY 1 cut(s) 860
XmiI GTMKAC 2 cut(s) 238, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.