Rh3DG030600

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000230
Physical Location & Seq
Reverse (-)
2021700 .. 2023401
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG030600.1

Sequence Viewer

Length: 1017 bp
ATGGCAGTTAAAAACCCTAATAGTAGCCTTCGTCGTTTAGACAAGTATTATTATAGGGTAGTGGTCATCATCATTCTTGTGCTTCATCCGGTGTGTTATTCTGTTGCAGCAGCAAATATTAACAATAATCATCATTCTGGTTTCAGTACCCACCTTATTCGAAAAAAGTCCCTAAATTCACCCTTCCACAATCATAGAAAGAATAAAGTTTTTCGACGTTTGATGGGTCCAAACACACCACAATCACCGCTTACAATGGACGAGGATGATGGTGAACATCTTATGAAGTTCTCAATAGGAACTCCGGCCGTCGATATTTATGCAGTTGCTGATTCAGGTAGCACTTTACTATGGACCCAATGCAAGCCGTGTGATGGTTGCTACAAGATGAAGCGTGCCATGTTCGACCCGAAAAAGTCATCAACTTATAGGAAGGTTCCTTGTTCCACAAAGGAATGTAGTTTTCTTGAAGACAATGGATTTTGCTCCTTACCCAAAATGGTTTGCACTTACTACTACGCTTATGTAGATGACTCAATCTCTAAAGGGGTATTGGCTAAAGAAACAATTATCTTGACGTCCACGTCAGGTAAGCCTGTGTCCCTGAAAAATATCGTGATGGGTTGTGGGCATAACAACAGTGGTTCTTTAACTGAAAATCAAATGGGAGTGATTGGGCTTGGACGTGGACCATTGTCATTTATATCTCAAATTGGTCCTCTGGTTGGAGGCAAAAAATTCTCACATTGCTTGGTGCCAACTGATACTGATCCAAAAACTGCAAGCAAGATCAGTTTTGGAAATGGGAGTGAAGTTTCGGGTGACGGTGTGGTGACAACGTCATTGGTCGATAAAGCACTATTCCAGGATCAATATCTAGTGACGCTAGAAGGAGTTACCGTCGGAAATAAGTTTGTTCCGTTTAGTAATTCACAAGGAAACTTGAAGTTGTTTGAGAAAGATGACCGTGAAAATCGGACACACATTGTTGTAGATCACCATGAAATCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

338

Amino Acids

37.24

Weight (kDa)

8.96

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 94 - 268 1.3e-49 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 583
AatII GACGTC 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 754
AciI CCGC 1 cut(s) 248
AclWI GGATC 2 cut(s) 764, 876
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 175, 737
AcyI GRCGYC 1 cut(s) 578
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 374, 725
AgsI TTSAA 2 cut(s) 470, 946
AjiI CACGTC 2 cut(s) 585, 686
AjnI CCWGG 1 cut(s) 864
AlwI GGATC 2 cut(s) 764, 876
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 2 cut(s) 107, 110
ApoI RAATTY 2 cut(s) 175, 737
AspS9I GGNCC 4 cut(s) 227, 354, 689, 716
AsuHPI GGTGA 6 cut(s) 171, 237, 284, 833, 844, 989
AsuII TTCGAA 1 cut(s) 160
AvaII GGWCC 4 cut(s) 227, 354, 689, 716
BanI GGYRCC 1 cut(s) 754
BbsI GAAGAC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 119, 122
BccI CCATC 4 cut(s) 217, 263, 368, 613
BceAI ACGGC 2 cut(s) 293, 352
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 1 cut(s) 866
BfaI CTAG 2 cut(s) 878, 887
BisI GCNGC 2 cut(s) 108, 111
BlsI GCNGC 2 cut(s) 109, 112
Bme1390I CCNGG 1 cut(s) 866
Bme18I GGWCC 4 cut(s) 227, 354, 689, 716
BmgBI CACGTC 2 cut(s) 585, 686
BmgT120I GGNCC 4 cut(s) 227, 354, 689, 716
BmiI GGNNCC 4 cut(s) 228, 356, 438, 756
BmrFI CCNGG 1 cut(s) 866
BoxI GACNNNNGTC 1 cut(s) 694
BpiI GAAGAC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 160
BsaBI GATNNNNATC 2 cut(s) 768, 873
BsaHI GRCGYC 1 cut(s) 578
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 885, 915
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 725
Bse3DI GCAATG 1 cut(s) 745
Bse8I GATNNNNATC 2 cut(s) 768, 873
BseBI CCWGG 1 cut(s) 866
BseGI GGATG 2 cut(s) 85, 271
BseJI GATNNNNATC 2 cut(s) 768, 873
BseLI CCNNNNNNNGG 2 cut(s) 374, 725
BseMI GCAATG 1 cut(s) 745
BseX3I CGGCCG 1 cut(s) 306
BseXI GCAGC 2 cut(s) 119, 122
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 754
BsiEI CGRYCG 1 cut(s) 309
BsiSI CCGG 2 cut(s) 89, 305
BslFI GGGAC 2 cut(s) 154, 586
BslI CCNNNNNNNGG 2 cut(s) 374, 725
BsmFI GGGAC 2 cut(s) 154, 586
BsnI GGCC 1 cut(s) 308
Bsp119I TTCGAA 1 cut(s) 160
Bsp143I GATC 4 cut(s) 769, 789, 868, 994
BspACI CCGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 308
BspLI GGNNCC 4 cut(s) 228, 356, 438, 756
BspPI GGATC 2 cut(s) 764, 876
BspT104I TTCGAA 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 745
BssMI GATC 4 cut(s) 769, 789, 868, 994
BssNI GRCGYC 1 cut(s) 578
Bst2UI CCWGG 1 cut(s) 866
Bst4CI ACNGT 4 cut(s) 641, 827, 901, 968
BstACI GRCGYC 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 160
BstC8I GCNNGC 3 cut(s) 365, 396, 784
BstF5I GGATG 2 cut(s) 85, 271
BstKTI GATC 4 cut(s) 772, 792, 871, 997
BstMBI GATC 4 cut(s) 769, 789, 868, 994
BstMCI CGRYCG 1 cut(s) 309
BstNI CCWGG 1 cut(s) 866
BstPAI GACNNNNGTC 1 cut(s) 694
BstSCI CCNGG 1 cut(s) 864
BstV1I GCAGC 2 cut(s) 119, 122
BstV2I GAAGAC 1 cut(s) 477
BstZI CGGCCG 1 cut(s) 306
BsuRI GGCC 1 cut(s) 308
BtrI CACGTC 2 cut(s) 585, 686
BtsCI GGATG 2 cut(s) 85, 271
BtsIMutI CAGTG 1 cut(s) 646
Cac8I GCNNGC 3 cut(s) 365, 396, 784
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 4 cut(s) 227, 354, 689, 716
CseI GACGC 1 cut(s) 892
Csp6I GTAC 1 cut(s) 147
CviAII CATG 2 cut(s) 400, 1001
CviJI RGCY 6 cut(s) 27, 308, 367, 557, 595, 679
CviKI_1 RGCY 6 cut(s) 27, 308, 367, 557, 595, 679
CviQI GTAC 1 cut(s) 147
DpnI GATC 4 cut(s) 771, 791, 870, 996
DpnII GATC 4 cut(s) 769, 789, 868, 994
DrdI GACNNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 306
EagI CGGCCG 1 cut(s) 306
EclXI CGGCCG 1 cut(s) 306
Eco47I GGWCC 4 cut(s) 227, 354, 689, 716
Eco52I CGGCCG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 864
FaeI CATG 2 cut(s) 403, 1004
FaqI GGGAC 2 cut(s) 154, 586
FatI CATG 2 cut(s) 399, 1000
Fnu4HI GCNGC 2 cut(s) 108, 111
FokI GGATG 2 cut(s) 72, 278
Fsp4HI GCNGC 2 cut(s) 108, 111
FspBI CTAG 2 cut(s) 878, 887
GluI GCNGC 2 cut(s) 108, 111
HaeIII GGCC 1 cut(s) 308
HapII CCGG 2 cut(s) 89, 305
HgaI GACGC 1 cut(s) 892
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 2 cut(s) 403, 1004
HinfI GANTC 2 cut(s) 332, 533
HpaII CCGG 2 cut(s) 89, 305
HphI GGTGA 6 cut(s) 171, 237, 284, 833, 844, 989
Hpy166II GTNNAC 3 cut(s) 275, 582, 689
Hpy188I TCNGA 2 cut(s) 905, 978
Hpy188III TCNNGA 3 cut(s) 467, 574, 616
Hpy8I GTNNAC 3 cut(s) 275, 582, 689
Hpy99I CGWCG 4 cut(s) 36, 219, 314, 905
HpyAV CCTTC 4 cut(s) 38, 193, 427, 884
HpyCH4III ACNGT 4 cut(s) 641, 827, 901, 968
HpyCH4IV ACGT 5 cut(s) 217, 578, 584, 685, 839
HpyCH4V TGCA 5 cut(s) 107, 323, 363, 507, 782
HpySE526I ACGT 5 cut(s) 217, 578, 584, 685, 839
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 2 cut(s) 403, 1004
Kzo9I GATC 4 cut(s) 769, 789, 868, 994
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 2 cut(s) 119, 122
MaeI CTAG 2 cut(s) 878, 887
MaeII ACGT 5 cut(s) 217, 578, 584, 685, 839
MaeIII GTNAC 4 cut(s) 821, 832, 880, 895
MalI GATC 4 cut(s) 771, 791, 870, 996
MboI GATC 4 cut(s) 769, 789, 868, 994
MboII GAAGA 1 cut(s) 482
MluCI AATT 5 cut(s) 175, 567, 711, 737, 928
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 2 cut(s) 706, 883
MnlI CCTC 3 cut(s) 256, 722, 729
MseI TTAA 3 cut(s) 9, 120, 650
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 2 cut(s) 89, 305
MspR9I CCNGG 1 cut(s) 866
MvaI CCWGG 1 cut(s) 866
NdeII GATC 4 cut(s) 769, 789, 868, 994
NlaIII CATG 2 cut(s) 403, 1004
NlaIV GGNNCC 4 cut(s) 228, 356, 438, 756
NmuCI GTSAC 3 cut(s) 821, 832, 880
NspV TTCGAA 1 cut(s) 160
PfeI GAWTC 1 cut(s) 332
PflFI GACNNNGTC 1 cut(s) 838
PfoI TCCNGGA 1 cut(s) 864
PkrI GCNGC 2 cut(s) 109, 112
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PshAI GACNNNNGTC 1 cut(s) 694
Psp6I CCWGG 1 cut(s) 864
PspGI CCWGG 1 cut(s) 864
PspN4I GGNNCC 4 cut(s) 228, 356, 438, 756
PspPI GGNCC 4 cut(s) 227, 354, 689, 716
PstNI CAGNNNCTG 1 cut(s) 329
PsyI GACNNNGTC 1 cut(s) 838
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 3 cut(s) 9, 120, 650
SatI GCNGC 2 cut(s) 108, 111
Sau3AI GATC 4 cut(s) 769, 789, 868, 994
Sau96I GGNCC 4 cut(s) 227, 354, 689, 716
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 1 cut(s) 866
SetI ASST 9 cut(s) 156, 220, 340, 438, 581, 587, 592, 688, 842
SfuI TTCGAA 1 cut(s) 160
SinI GGWCC 4 cut(s) 227, 354, 689, 716
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 5 cut(s) 175, 567, 711, 737, 928
SsiI CCGC 1 cut(s) 248
SspI AATATT 1 cut(s) 118
SspMI CTAG 2 cut(s) 878, 887
StyD4I CCNGG 1 cut(s) 864
TaaI ACNGT 4 cut(s) 641, 827, 901, 968
TaiI ACGT 5 cut(s) 220, 581, 587, 688, 842
TaqI TCGA 5 cut(s) 160, 214, 312, 405, 849
TasI AATT 5 cut(s) 175, 567, 711, 737, 928
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 3 cut(s) 9, 120, 650
Tru9I TTAA 3 cut(s) 9, 120, 650
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 3 cut(s) 821, 832, 880
TseI GCWGC 2 cut(s) 107, 110
Tsp45I GTSAC 3 cut(s) 821, 832, 880
TspDTI ATGAA 4 cut(s) 74, 299, 404, 1017
TspGWI ACGGA 1 cut(s) 909
TspRI CASTG 1 cut(s) 646
Tth111I GACNNNGTC 1 cut(s) 838
VpaK11BI GGWCC 4 cut(s) 227, 354, 689, 716
XapI RAATTY 2 cut(s) 175, 737
XspI CTAG 2 cut(s) 878, 887
ZraI GACGTC 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.