Rorug02G0628500

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000230
Physical Location & Seq
Reverse (-)
74354016 .. 74354777
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0628500.1

Sequence Viewer

Length: 762 bp
ATGGAGACCCAAAATCTTCAAACCCTTCCAGTACCTCATGATTACCACGCGAATGTTGACAGTTCACGACCCTTCCGCTCAGTCAAGGAAGCTGTTGCCGTCTTTGGAGAGCGGCTTCTCCTCGGAGAGTTCTTCTCATCACCATCCCCTAAACCGCCGCAGCTGCTGCCATGTTACACCGAGCAAGAAGTAGAAACTTCTTCACCAAGGAACAAGTCTGTCATCTCATCACCAAGTACTAGTGCTGATCCACATAGTAAAGAAAGTGATAATGTTTTGGATAGTCTCAAGAAACTTGAGGCTGAGCTTGAGGAAACAAAGGTGGAGTTGAAGATGCTCAAGGAGAGAGAGTCTGAAACCGAGGTGGCCTTGGCAACCTTGAATGCAGAGCTTCACAAGAACATGTCCAAGTTGGCTCAGGCTGAGGCGGTCGCAGCAGCAAAAGCAGCGGCTAGTAGTGATCACCATGTTATCAGTTCGATGAGATCAAATTCGGAGGAAGCAGAGAAGAGTGTTAAGAAGGATCAGTGGTCGATGATAAGGATGGAGGACACTACTACTTTGGCTCAGATATTAAGCATTGGTTCTCAACATGAGAATCAATGTGGTTATTATGGGAGCGGAGGAAAAAGAGAGAGGAATTATAAGATGATGAAGAAGAAGCCTATTGTTCCTCTTCTGCAGGACTTGTTTTCCTGGAAAAAGGGGTCGTCTACTCCTCTCCATGACCATATTTATTCGTCTCCGAAACTCTACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

253

Amino Acids

28.3

Weight (kDa)

6.32

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 645
AccBSI CCGCTC 3 cut(s) 78, 112, 621
AccI GTMKAC 1 cut(s) 713
AccII CGCG 1 cut(s) 50
AciI CCGC 7 cut(s) 76, 112, 155, 158, 428, 449, 621
AclWI GGATC 2 cut(s) 242, 531
AcsI RAATTY 1 cut(s) 490
AfaI GTAC 2 cut(s) 33, 238
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 3 cut(s) 20, 331, 382
AhlI ACTAGT 1 cut(s) 239
AjnI CCWGG 1 cut(s) 695
AluBI AGCT 4 cut(s) 92, 163, 307, 391
AluI AGCT 4 cut(s) 92, 163, 307, 391
Alw26I GTCTC 2 cut(s) 290, 747
AlwI GGATC 2 cut(s) 242, 531
AlwNI CAGNNNCTG 1 cut(s) 166
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 6 cut(s) 160, 163, 166, 434, 437, 446
ApoI RAATTY 1 cut(s) 490
AsuHPI GGTGA 4 cut(s) 132, 195, 222, 455
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 6 cut(s) 150, 153, 172, 446, 449, 458
BccI CCATC 2 cut(s) 151, 538
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 697
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 290, 747
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 2 cut(s) 240, 453
BfmI CTRYAG 1 cut(s) 680
BisI GCNGC 9 cut(s) 113, 158, 161, 164, 167, 435, 438, 447, 450
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 9 cut(s) 114, 159, 162, 165, 168, 436, 439, 448, 451
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 697
BmrFI CCNGG 1 cut(s) 697
BmsI GCATC 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 119, 151
Bpu10I CCTNAGC 2 cut(s) 417, 423
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 4 cut(s) 272, 317, 323, 329
BsaJI CCNNGG 4 cut(s) 121, 206, 360, 369
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 697
BseDI CCNNGG 4 cut(s) 121, 206, 360, 369
BseGI GGATG 2 cut(s) 143, 549
BseMII CTCAG 5 cut(s) 93, 294, 414, 431, 581
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 2 cut(s) 110, 708
BseXI GCAGC 6 cut(s) 150, 153, 172, 446, 449, 458
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 432
BsmAI GTCTC 2 cut(s) 290, 747
BsmBI CGTCTC 1 cut(s) 747
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 1 cut(s) 368
Bsp143I GATC 4 cut(s) 247, 460, 485, 523
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 7 cut(s) 76, 112, 155, 158, 428, 449, 621
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 5 cut(s) 92, 295, 415, 430, 580
BspFNI CGCG 1 cut(s) 50
BspHI TCATGA 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 684
BspPI GGATC 2 cut(s) 242, 531
BsrBI CCGCTC 3 cut(s) 78, 112, 621
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 4 cut(s) 121, 206, 360, 369
BssMI GATC 4 cut(s) 247, 460, 485, 523
BssT1I CCWWGG 2 cut(s) 206, 369
Bst2UI CCWGG 1 cut(s) 697
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 503, 681
BstAPI GCANNNNNTGC 1 cut(s) 166
BstDEI CTNAG 5 cut(s) 79, 303, 417, 423, 567
BstF5I GGATG 2 cut(s) 143, 549
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 4 cut(s) 250, 463, 488, 526
BstMAI GTCTC 2 cut(s) 290, 747
BstMBI GATC 4 cut(s) 247, 460, 485, 523
BstMCI CGRYCG 1 cut(s) 432
BstMWI GCNNNNNNNGC 5 cut(s) 163, 166, 434, 443, 446
BstNI CCWGG 1 cut(s) 697
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 695
BstSFI CTRYAG 1 cut(s) 680
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 6 cut(s) 150, 153, 172, 446, 449, 458
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 2 cut(s) 143, 549
BtsIMutI CAGTG 1 cut(s) 533
CaiI CAGNNNCTG 1 cut(s) 166
CciI TCATGA 1 cut(s) 37
Csp6I GTAC 2 cut(s) 32, 237
CviAII CATG 6 cut(s) 38, 171, 403, 467, 593, 725
CviQI GTAC 2 cut(s) 32, 237
DdeI CTNAG 5 cut(s) 79, 303, 417, 423, 567
DpnI GATC 4 cut(s) 249, 462, 487, 525
DpnII GATC 4 cut(s) 247, 460, 485, 523
Eam1104I CTCTTC 2 cut(s) 503, 681
EarI CTCTTC 2 cut(s) 503, 681
Eco130I CCWWGG 2 cut(s) 206, 369
EcoRII CCWGG 1 cut(s) 695
EcoT14I CCWWGG 2 cut(s) 206, 369
ErhI CCWWGG 2 cut(s) 206, 369
Esp3I CGTCTC 1 cut(s) 747
FaeI CATG 6 cut(s) 41, 174, 406, 470, 596, 728
FatI CATG 6 cut(s) 37, 170, 402, 466, 592, 724
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 713
Fnu4HI GCNGC 9 cut(s) 113, 158, 161, 164, 167, 435, 438, 447, 450
FokI GGATG 2 cut(s) 130, 556
Fsp4HI GCNGC 9 cut(s) 113, 158, 161, 164, 167, 435, 438, 447, 450
FspBI CTAG 2 cut(s) 240, 453
GluI GCNGC 9 cut(s) 113, 158, 161, 164, 167, 435, 438, 447, 450
HaeIII GGCC 1 cut(s) 368
Hin1II CATG 6 cut(s) 41, 174, 406, 470, 596, 728
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 2 cut(s) 350, 598
HphI GGTGA 4 cut(s) 132, 195, 222, 455
Hpy166II GTNNAC 3 cut(s) 58, 65, 714
Hpy188I TCNGA 5 cut(s) 125, 355, 496, 570, 747
Hpy188III TCNNGA 3 cut(s) 38, 66, 289
Hpy8I GTNNAC 3 cut(s) 58, 65, 714
HpyAV CCTTC 3 cut(s) 35, 82, 514
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 386, 682
HpyF10VI GCNNNNNNNGC 5 cut(s) 163, 166, 434, 443, 446
HpyF3I CTNAG 5 cut(s) 79, 303, 417, 423, 567
Hsp92II CATG 6 cut(s) 41, 174, 406, 470, 596, 728
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 247, 460, 485, 523
LmnI GCTCC 1 cut(s) 618
LpnPI CCDG 5 cut(s) 42, 404, 668, 682, 709
Lsp1109I GCAGC 6 cut(s) 150, 153, 172, 446, 449, 458
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 240, 453
MaeIII GTNAC 1 cut(s) 173
MalI GATC 4 cut(s) 249, 462, 487, 525
MbiI CCGCTC 3 cut(s) 78, 112, 621
MboI GATC 4 cut(s) 247, 460, 485, 523
MboII GAAGA 8 cut(s) 8, 124, 192, 343, 520, 667, 668, 670
MluCI AATT 2 cut(s) 490, 640
MlyI GAGTC 1 cut(s) 359
MseI TTAA 2 cut(s) 516, 575
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 163, 449
MspR9I CCNGG 1 cut(s) 697
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 697
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 5 cut(s) 163, 166, 434, 443, 446
NdeII GATC 4 cut(s) 247, 460, 485, 523
NlaIII CATG 6 cut(s) 41, 174, 406, 470, 596, 728
NspI RCATGY 1 cut(s) 406
PagI TCATGA 1 cut(s) 37
PciI ACATGT 1 cut(s) 402
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 1 cut(s) 598
PfoI TCCNGGA 1 cut(s) 695
PkrI GCNGC 9 cut(s) 114, 159, 162, 165, 168, 436, 439, 448, 451
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PscI ACATGT 1 cut(s) 402
PsiI TTATAA 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 695
PspGI CCWGG 1 cut(s) 695
PstI CTGCAG 1 cut(s) 684
PstNI CAGNNNCTG 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 2 cut(s) 33, 238
RsaNI GTAC 2 cut(s) 32, 237
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 516, 575
SatI GCNGC 9 cut(s) 113, 158, 161, 164, 167, 435, 438, 447, 450
Sau3AI GATC 4 cut(s) 247, 460, 485, 523
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 697
SetI ASST 8 cut(s) 37, 94, 165, 309, 324, 366, 380, 393
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 4 cut(s) 287, 296, 308, 338
SmoI CTYRAG 4 cut(s) 287, 296, 308, 338
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 2 cut(s) 490, 640
SsiI CCGC 7 cut(s) 76, 112, 155, 158, 428, 449, 621
SspMI CTAG 2 cut(s) 240, 453
StyD4I CCNGG 1 cut(s) 695
StyI CCWWGG 2 cut(s) 206, 369
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 479, 533
TasI AATT 2 cut(s) 490, 640
TatI WGTACW 1 cut(s) 236
TauI GCSGC 3 cut(s) 115, 160, 452
TfiI GAWTC 1 cut(s) 598
Tru1I TTAA 2 cut(s) 516, 575
Tru9I TTAA 2 cut(s) 516, 575
TscAI CASTG 1 cut(s) 533
TseI GCWGC 6 cut(s) 160, 163, 166, 434, 437, 446
TspDTI ATGAA 1 cut(s) 668
TspRI CASTG 1 cut(s) 533
XapI RAATTY 1 cut(s) 490
XceI RCATGY 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 713
XspI CTAG 2 cut(s) 240, 453
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.