Rh3CG028800

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
1982430 .. 1984184
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG028800.1

Sequence Viewer

Length: 1326 bp
ATGGCTGTCCTATGTCCTTTACACAAAAATAATTATACTATGGCTGTCATCACCCTTTTTTTCTTTCATCTCATTTATAACTATGCTACAGTAGCAACCAATATCAATGGTGGCTTTAGCGCTCATCTTATCCGAAAAAATTCTCCAAAATCACCATTGCACCAACACAAAAACAACAAATTTTTTCGACGGTTGATGGGTCCAGACACGCCAGGATCACCAATGCAATTCGATGCAGGTAGTGGCGCACATATTATGAAGTTCTCAATGGGAACCCCGCTCTTCGATATTTATGCAATTGTTGATACAGGCAGCGATCTATTATGGACGCAATGTCAGCCTTGTCAAGGTTGCTACAAGAGCAACTTTGGCATTTTTGACCCGAGAAAATCCTCAACTCATAAGAACATTACTTGTCGGTCAAGAGACTGTAGACTCCTTGGCTCGTTCTATGCACATGACTATTGTATACAAAAACCTACGGGAAATTGTGTTTACAGCTACGAGTATCTAGAAGGGACTGGCTCAATGGGTCTATTGGGTAAAGAAACAGTTACCTTGACATCCACTACAGGTAAAGTTGTAGCCCTAAAAGATATTATTTTTGGGTGTGGGTATAAAAACAATGAATCTATTTCAAGTGGAAATATAATGGGAATGATTGGGCTTGGACGTGGGCCATTATCATTGATTTCTCAAATTGCTCCCTATGTTGGAGGCAAAAGATTCTCTTATTGTTTGGTGCAAGATCCCAACATCCAAAGCAAGATCTATTTTGGGAATGGGAGTGAAGTTTTGGGTGAAGGAGTGGTGACAACCCCTATGGTCGATATTGAATCAAACGAGAACAGTTATCTTATCACAGTATTAGGAATTACCATCGAAAATGAGTTTCTTTCTTTTAACTCAACTGGGACTTTACTCAAGAAAGGTAACATGAATGTTGACAGTGGTACATCTACGTCACGTTTACCACAAGACTTTTTTGACCGGATGGTAACTCAGCTAAAAAAGATAGTTAAATTGCAGTCATTCATATATACCAAGGATATGATGAGTCTCCTATGCTTTAACTCCACGACGCCTCCACAATTAACACCAATGGTTTTCCATTTTGAGGGTGGTAGCAAACTGCCGGTGGCGATGGACCAATTATTTTTTGAAGAAATGCCTGGGGCATTTTGCTTAGGAATTTCAAACATAACTAATGGGTATCAAGGTTATTTCGGAGGTTCTCTACAGACAAATCTCTTGATTGGCTTTGACTCTGATAAAAAAGTGATATCCTTTAAGCCAACTAATTGCGCAGACTTTAACAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

441

Amino Acids

48.67

Weight (kDa)

8.56

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 85 - 261 3.5e-48 Xylanase inhibitor N-terminal
Asp PF00026 86 - 430 6.3e-11 Eukaryotic aspartyl protease
TAXi_C PF14541 285 - 431 2.9e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
Acc16I TGCGCA 1 cut(s) 1306
Acc36I ACCTGC 1 cut(s) 227
AccBSI CCGCTC 1 cut(s) 280
AccI GTMKAC 2 cut(s) 433, 469
AciI CCGC 1 cut(s) 278
AclWI GGATC 2 cut(s) 223, 743
AcsI RAATTY 3 cut(s) 139, 179, 1191
AcyI GRCGYC 1 cut(s) 1082
AfaI GTAC 1 cut(s) 955
AfeI AGCGCT 1 cut(s) 121
AfiI CCNNNNNNNGG 3 cut(s) 347, 713, 1117
AgsI TTSAA 4 cut(s) 639, 836, 1163, 1197
AhdI GACNNNNNGTC 1 cut(s) 333
AjiI CACGTC 1 cut(s) 674
AjnI CCWGG 2 cut(s) 211, 1171
AluBI AGCT 2 cut(s) 501, 1006
AluI AGCT 2 cut(s) 501, 1006
Alw26I GTCTC 2 cut(s) 420, 1064
AlwI GGATC 2 cut(s) 223, 743
Ama87I CYCGRG 1 cut(s) 382
Aor51HI AGCGCT 1 cut(s) 121
AoxI GGCC 1 cut(s) 677
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 3 cut(s) 139, 179, 1191
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 3 cut(s) 122, 248, 1307
AspS9I GGNCC 3 cut(s) 200, 677, 1147
AsuHPI GGTGA 5 cut(s) 43, 144, 210, 812, 823
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 2 cut(s) 200, 1147
BbvI GCAGC 1 cut(s) 324
BccI CCATC 4 cut(s) 190, 887, 988, 1138
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 2 cut(s) 213, 1173
BcoDI GTCTC 2 cut(s) 420, 1064
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 4 cut(s) 87, 430, 570, 1238
BfoI RGCGCY 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 227
BglII AGATCT 1 cut(s) 768
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 2 cut(s) 213, 1173
Bme18I GGWCC 2 cut(s) 200, 1147
BmeRI GACNNNNNGTC 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 382
BmgBI CACGTC 1 cut(s) 674
BmgT120I GGNCC 3 cut(s) 200, 677, 1147
BmiI GGNNCC 2 cut(s) 201, 274
BmrFI CCNGG 2 cut(s) 213, 1173
BmrI ACTGGG 1 cut(s) 921
BmsI GCATC 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 921
Bpu10I CCTNAGC 1 cut(s) 1186
BpuEI CTTGAG 1 cut(s) 908
BsaHI GRCGYC 1 cut(s) 1082
BsaJI CCNNGG 3 cut(s) 439, 1044, 1172
BsaWI WCCGGW 1 cut(s) 990
BsaXI ACNNNNNCTCC 2 cut(s) 1069, 1099
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 713, 1117
Bse118I RCCGGY 1 cut(s) 1135
Bse1I ACTGG 2 cut(s) 526, 916
Bse3DI GCAATG 2 cut(s) 155, 338
BseBI CCWGG 2 cut(s) 213, 1173
BseDI CCNNGG 3 cut(s) 439, 1044, 1172
BseGI GGATG 3 cut(s) 563, 756, 999
BseLI CCNNNNNNNGG 3 cut(s) 347, 713, 1117
BseMI GCAATG 2 cut(s) 155, 338
BseMII CTCAG 1 cut(s) 1016
BseNI ACTGG 2 cut(s) 526, 916
BseXI GCAGC 1 cut(s) 324
BshFI GGCC 1 cut(s) 679
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 2 cut(s) 991, 1136
BslFI GGGAC 2 cut(s) 532, 928
BslI CCNNNNNNNGG 3 cut(s) 347, 713, 1117
BsmAI GTCTC 2 cut(s) 420, 1064
BsmFI GGGAC 2 cut(s) 532, 928
BsnI GGCC 1 cut(s) 679
BsoBI CYCGRG 1 cut(s) 382
Bsp143I GATC 4 cut(s) 215, 316, 748, 768
BspACI CCGC 1 cut(s) 278
BspANI GGCC 1 cut(s) 679
BspCNI CTCAG 1 cut(s) 1015
BspLI GGNNCC 2 cut(s) 201, 274
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 2 cut(s) 223, 743
BspQI GCTCTTC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 280
BsrDI GCAATG 2 cut(s) 155, 338
BsrFI RCCGGY 1 cut(s) 1135
BsrI ACTGG 2 cut(s) 526, 916
BssAI RCCGGY 1 cut(s) 1135
BssECI CCNNGG 3 cut(s) 439, 1044, 1172
BssMI GATC 4 cut(s) 215, 316, 748, 768
BssNAI GTATAC 1 cut(s) 470
BssNI GRCGYC 1 cut(s) 1082
BssT1I CCWWGG 2 cut(s) 439, 1044
Bst1107I GTATAC 1 cut(s) 470
Bst2UI CCWGG 2 cut(s) 213, 1173
Bst4CI ACNGT 7 cut(s) 91, 192, 431, 553, 851, 865, 950
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 1082
BstDEI CTNAG 2 cut(s) 1002, 1186
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 3 cut(s) 563, 756, 999
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 3 cut(s) 122, 248, 1307
BstKTI GATC 4 cut(s) 218, 319, 751, 771
BstMAI GTCTC 2 cut(s) 420, 1064
BstMBI GATC 4 cut(s) 215, 316, 748, 768
BstMWI GCNNNNNNNGC 4 cut(s) 92, 337, 360, 369
BstNI CCWGG 2 cut(s) 213, 1173
BstSCI CCNGG 2 cut(s) 211, 1171
BstSFI CTRYAG 4 cut(s) 87, 430, 570, 1238
BstV1I GCAGC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 748, 768
BstYI RGATCY 2 cut(s) 748, 768
BstZ17I GTATAC 1 cut(s) 470
BsuRI GGCC 1 cut(s) 679
BtgZI GCGATG 1 cut(s) 1157
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 3 cut(s) 563, 756, 999
BtsIMutI CAGTG 1 cut(s) 955
BveI ACCTGC 1 cut(s) 227
CfoI GCGC 3 cut(s) 122, 248, 1307
Cfr10I RCCGGY 1 cut(s) 1135
Cfr13I GGNCC 3 cut(s) 200, 677, 1147
CseI GACGC 2 cut(s) 337, 1090
Csp6I GTAC 1 cut(s) 954
CviAII CATG 2 cut(s) 458, 937
CviQI GTAC 1 cut(s) 954
DdeI CTNAG 2 cut(s) 1002, 1186
DpnI GATC 4 cut(s) 217, 318, 750, 770
DpnII GATC 4 cut(s) 215, 316, 748, 768
DriI GACNNNNNGTC 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 287
Eam1105I GACNNNNNGTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 287
Eco130I CCWWGG 2 cut(s) 439, 1044
Eco32I GATATC 1 cut(s) 1284
Eco47I GGWCC 2 cut(s) 200, 1147
Eco47III AGCGCT 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 382
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 211, 1171
EcoRV GATATC 1 cut(s) 1284
EcoT14I CCWWGG 2 cut(s) 439, 1044
ErhI CCWWGG 2 cut(s) 439, 1044
FaeI CATG 2 cut(s) 461, 940
FalI AAGNNNNNCTT 4 cut(s) 350, 382, 715, 747
FaqI GGGAC 2 cut(s) 532, 928
FatI CATG 2 cut(s) 457, 936
FauI CCCGC 1 cut(s) 285
FblI GTMKAC 2 cut(s) 433, 469
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 3 cut(s) 550, 743, 1006
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 1 cut(s) 512
FspI TGCGCA 1 cut(s) 1306
GlaI GCGC 3 cut(s) 121, 247, 1306
GluI GCNGC 1 cut(s) 313
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 1 cut(s) 679
HapII CCGG 2 cut(s) 991, 1136
HgaI GACGC 2 cut(s) 337, 1090
HhaI GCGC 3 cut(s) 122, 248, 1307
Hin1I GRCGYC 1 cut(s) 1082
Hin1II CATG 2 cut(s) 461, 940
Hin6I GCGC 3 cut(s) 120, 246, 1305
HinP1I GCGC 3 cut(s) 120, 246, 1305
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HinfI GANTC 6 cut(s) 435, 629, 726, 836, 1057, 1265
HpaII CCGG 2 cut(s) 991, 1136
HphI GGTGA 5 cut(s) 43, 144, 210, 812, 823
Hpy166II GTNNAC 5 cut(s) 434, 470, 496, 946, 971
Hpy188I TCNGA 3 cut(s) 134, 1229, 1270
Hpy188III TCNNGA 5 cut(s) 203, 423, 512, 925, 1252
Hpy8I GTNNAC 5 cut(s) 434, 470, 496, 946, 971
Hpy99I CGWCG 2 cut(s) 192, 1084
HpyAV CCTTC 2 cut(s) 509, 797
HpyCH4III ACNGT 7 cut(s) 91, 192, 431, 553, 851, 865, 950
HpyCH4IV ACGT 3 cut(s) 673, 962, 967
HpyCH4V TGCA 7 cut(s) 160, 226, 236, 296, 455, 745, 1027
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 337, 360, 369
HpyF3I CTNAG 2 cut(s) 1002, 1186
HpySE526I ACGT 3 cut(s) 673, 962, 967
Hsp92I GRCGYC 1 cut(s) 1082
Hsp92II CATG 2 cut(s) 461, 940
HspAI GCGC 3 cut(s) 120, 246, 1305
Kzo9I GATC 4 cut(s) 215, 316, 748, 768
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 1 cut(s) 709
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 512
MaeII ACGT 3 cut(s) 673, 962, 967
MaeIII GTNAC 5 cut(s) 553, 811, 932, 963, 997
MalI GATC 4 cut(s) 217, 318, 750, 770
MbiI CCGCTC 1 cut(s) 280
MboI GATC 4 cut(s) 215, 316, 748, 768
MboII GAAGA 2 cut(s) 274, 1175
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 2 cut(s) 748, 768
MlyI GAGTC 3 cut(s) 429, 1066, 1259
MmeI TCCRAC 1 cut(s) 694
MnlI CCTC 5 cut(s) 403, 710, 1095, 1111, 1223
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 6 cut(s) 903, 1020, 1071, 1094, 1290, 1314
MspI CCGG 2 cut(s) 991, 1136
MspR9I CCNGG 2 cut(s) 213, 1173
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 2 cut(s) 213, 1173
MwoI GCNNNNNNNGC 4 cut(s) 92, 337, 360, 369
NdeII GATC 4 cut(s) 215, 316, 748, 768
NlaIII CATG 2 cut(s) 461, 940
NlaIV GGNNCC 2 cut(s) 201, 274
NmuCI GTSAC 2 cut(s) 811, 963
NsbI TGCGCA 1 cut(s) 1306
PciSI GCTCTTC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 3 cut(s) 629, 726, 836
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 3 cut(s) 429, 1065, 1259
PpsI GAGTC 3 cut(s) 429, 1065, 1259
PsiI TTATAA 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 211, 1171
PspGI CCWGG 2 cut(s) 211, 1171
PspN4I GGNNCC 2 cut(s) 201, 274
PspPI GGNCC 3 cut(s) 200, 677, 1147
PsuI RGATCY 2 cut(s) 748, 768
RsaI GTAC 1 cut(s) 955
RsaNI GTAC 1 cut(s) 954
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 6 cut(s) 903, 1020, 1071, 1094, 1290, 1314
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 4 cut(s) 215, 316, 748, 768
Sau96I GGNCC 3 cut(s) 200, 677, 1147
SchI GAGTC 3 cut(s) 429, 1066, 1259
ScrFI CCNGG 2 cut(s) 213, 1173
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 4 cut(s) 87, 430, 570, 1238
SinI GGWCC 2 cut(s) 200, 1147
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
SsiI CCGC 1 cut(s) 278
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 2 cut(s) 211, 1171
StyI CCWWGG 2 cut(s) 439, 1044
TaaI ACNGT 7 cut(s) 91, 192, 431, 553, 851, 865, 950
TaiI ACGT 3 cut(s) 676, 965, 970
TaqI TCGA 5 cut(s) 187, 231, 285, 828, 882
TaqII GACCGA 1 cut(s) 408
TfiI GAWTC 3 cut(s) 629, 726, 836
Tru1I TTAA 6 cut(s) 903, 1020, 1071, 1094, 1290, 1314
Tru9I TTAA 6 cut(s) 903, 1020, 1071, 1094, 1290, 1314
TscAI CASTG 1 cut(s) 955
TseFI GTSAC 2 cut(s) 811, 963
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 2 cut(s) 811, 963
TspDTI ATGAA 5 cut(s) 56, 272, 642, 953, 1024
TspRI CASTG 1 cut(s) 955
VpaK11BI GGWCC 2 cut(s) 200, 1147
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 3 cut(s) 139, 179, 1191
XbaI TCTAGA 1 cut(s) 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 1118
XmiI GTMKAC 2 cut(s) 433, 469
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.