Rw2G042600

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000230
Physical Location & Seq
Reverse (-)
68958697 .. 68962965
4269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042600.1

Sequence Viewer

Length: 1338 bp
ATGGCTACCCTTTGTCCTTCATATAAAAATAATTATACTATAGCAATCATCACTATATTTTTCTTTCATCTCATATATTACTCTGTTACAGCAACAACTTCTATCAATAACAACGGTGGCTTTAGTGCCCATCTTATCCGAAGAAATTCTCCATATTCACCATTTTACAACCACAAAACCAACAAAGTTTTTCTACGGTTGATGGATCCAGACACAGCGGGATCCACATTGCCAACCGATTCGGGTGATGGCTTTAATATGAAGTTCTCATTGGGAACCCCGCCCTTAGATATTTATGCAGCTGCAGATACAGGTAGCGATATAGTATGGATGCAATGTCAGCCGTGTCAAGCTTGCTACGAGACCAAATATGCCCTCTTCGACTCGAGAAATTCCTCAACTTATAGAAACATTACTTGTTCTGCAAGGGAGTGTAGACTTCTTGGTGATGCCAGACCACCAAACTATTCACCAAACATATGTAGAAAACTTCCTAAAAGAAATTGTGATTATCGTGTCACGTATTCAGACAAGGCATCCTCTACAGGCATACTGGCAAAAGAAACAATTACCTTGACATCTAAGACAGGTAAAGTTGTAACTCTAAAAAATATTGTCTTTGGGTGTGGGTTTTTGAATGATGCTGGTCCAGTTGGTGCAACTGGAAATCAAATGGGAGTGATTGGGCTTGGAAAGGGGCCTTTGCCCGGCTCGTTGATGAGGCCTACTCCCCATGTTGGAGGGAAGAGATTTTCTTATTACTTGGTGCCCCTAGATACTGATCCCTCAACTAAAAGCCAGATCAATTTTGGGAATGGGAGTAAAGTTTTGGGTGAAGGGGTGGTCTCAACACCATTGGTTGATATAGAAGGAGAATCTTATGTTGTAGCGGTAGAAGGAATTACCATCGGAAAGGAATTTGTTCCGTTCAACTCATCAAAGACATTGGCCAATAAACTTAACATGATTGTCGACTTAGGCTCAACTCTTGGAGATGTACCTCGAGATATTTTTGACCGGGTGGTAACTCAGTTGAATAAGACTCTTGATCCGGAATTAGAGCGGTACATTTACACTGACTCGGAAGATAATTCAACTTCATTGTGCCTCAATTCGACGACAATTCCAAATGAACCAAAATTGGCTATTCATTTCGAGGGTGGTGGCAAAGTGGAGTTAATGGCAGAACAAATATTCTTTAGATTCAAAAATGAACTAATATGCTTTGGAATGCAAAGCACGTCTGATCTTGCCATTTTCCAAGAAAATTTCTTGGTTGGTTTTGACTTGGATAAAAAAGTGGTATCCTTCAAGCCAACTAATTGCCTAAACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

445

Amino Acids

48.92

Weight (kDa)

7.45

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 86 - 272 2.3e-39 Xylanase inhibitor N-terminal
Asp PF00026 167 - 437 1e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 294 - 438 1.6e-15 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 766
AccBSI CCGCTC 1 cut(s) 1063
AccI GTMKAC 2 cut(s) 436, 972
AccIII TCCGGA 1 cut(s) 1051
AciI CCGC 4 cut(s) 218, 281, 890, 1063
AclWI GGATC 6 cut(s) 200, 213, 216, 229, 776, 1043
AcoI YGGCCR 1 cut(s) 948
AcsI RAATTY 4 cut(s) 145, 391, 917, 1267
AfaI GTAC 2 cut(s) 999, 1067
AfiI CCNNNNNNNGG 2 cut(s) 707, 737
AgsI TTSAA 6 cut(s) 637, 931, 1036, 1095, 1207, 1312
AjiI CACGTC 1 cut(s) 1242
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 2 cut(s) 302, 353
AluI AGCT 2 cut(s) 302, 353
Alw26I GTCTC 2 cut(s) 356, 850
AlwI GGATC 6 cut(s) 200, 213, 216, 229, 776, 1043
Ama87I CYCGRG 2 cut(s) 385, 1002
Aor13HI TCCGGA 1 cut(s) 1051
AoxI GGCC 3 cut(s) 698, 722, 948
ApeKI GCWGC 2 cut(s) 299, 302
ApoI RAATTY 4 cut(s) 145, 391, 917, 1267
Asp700I GAANNNNTTC 2 cut(s) 145, 921
AspS9I GGNCC 2 cut(s) 647, 698
AsuC2I CCSGG 2 cut(s) 708, 1019
AsuHPI GGTGA 5 cut(s) 150, 257, 458, 462, 845
AvaI CYCGRG 2 cut(s) 385, 1002
AvaII GGWCC 1 cut(s) 647
BaeGI GKGCMC 2 cut(s) 130, 771
BalI TGGCCA 1 cut(s) 950
BamHI GGATCC 2 cut(s) 205, 221
BanI GGYRCC 1 cut(s) 766
BbvI GCAGC 2 cut(s) 289, 311
BccI CCATC 4 cut(s) 138, 196, 242, 914
BceAI ACGGC 1 cut(s) 328
BciVI GTATCC 1 cut(s) 1315
BcnI CCSGG 2 cut(s) 708, 1019
BcoDI GTCTC 2 cut(s) 356, 850
BfaI CTAG 2 cut(s) 773, 1336
BfmI CTRYAG 3 cut(s) 39, 303, 543
BfuI GTATCC 1 cut(s) 1315
BisI GCNGC 2 cut(s) 300, 303
BlsI GCNGC 2 cut(s) 301, 304
Bme1390I CCNGG 2 cut(s) 708, 1019
Bme18I GGWCC 1 cut(s) 647
BmeT110I CYCGRG 2 cut(s) 385, 1002
BmgBI CACGTC 1 cut(s) 1242
BmgT120I GGNCC 2 cut(s) 647, 698
BmiI GGNNCC 5 cut(s) 207, 223, 277, 699, 768
BmrFI CCNGG 2 cut(s) 708, 1019
BmsI GCATC 4 cut(s) 321, 439, 545, 631
BplI GAGNNNNNCTC 2 cut(s) 712, 744
BpuMI CCSGG 2 cut(s) 708, 1019
BsaAI YACGTR 1 cut(s) 522
BsaBI GATNNNNATC 1 cut(s) 780
BsaI GGTCTC 2 cut(s) 356, 850
BsaWI WCCGGW 1 cut(s) 1051
Bsc4I CCNNNNNNNGG 2 cut(s) 707, 737
Bse1I ACTGG 3 cut(s) 558, 650, 667
Bse3DI GCAATG 2 cut(s) 227, 341
Bse8I GATNNNNATC 1 cut(s) 780
BseAI TCCGGA 1 cut(s) 1051
BseGI GGATG 2 cut(s) 336, 536
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 2 cut(s) 707, 737
BseMI GCAATG 2 cut(s) 227, 341
BseMII CTCAG 1 cut(s) 1043
BseNI ACTGG 3 cut(s) 558, 650, 667
BseSI GKGCMC 2 cut(s) 130, 771
BseXI GCAGC 2 cut(s) 289, 311
BshFI GGCC 3 cut(s) 700, 724, 950
BshNI GGYRCC 1 cut(s) 766
BsiHKCI CYCGRG 2 cut(s) 385, 1002
BsiSI CCGG 3 cut(s) 708, 1018, 1052
BslI CCNNNNNNNGG 2 cut(s) 707, 737
BsmAI GTCTC 2 cut(s) 356, 850
BsmI GAATGC 1 cut(s) 1236
BsnI GGCC 3 cut(s) 700, 724, 950
Bso31I GGTCTC 2 cut(s) 356, 850
BsoBI CYCGRG 2 cut(s) 385, 1002
Bsp1286I GDGCHC 2 cut(s) 130, 771
Bsp13I TCCGGA 1 cut(s) 1051
Bsp143I GATC 6 cut(s) 205, 221, 781, 801, 1048, 1246
BspACI CCGC 4 cut(s) 218, 281, 890, 1063
BspANI GGCC 3 cut(s) 700, 724, 950
BspCNI CTCAG 1 cut(s) 1042
BspEI TCCGGA 1 cut(s) 1051
BspLI GGNNCC 5 cut(s) 207, 223, 277, 699, 768
BspMAI CTGCAG 1 cut(s) 307
BspPI GGATC 6 cut(s) 200, 213, 216, 229, 776, 1043
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 2 cut(s) 356, 850
BsrBI CCGCTC 1 cut(s) 1063
BsrDI GCAATG 2 cut(s) 227, 341
BsrI ACTGG 3 cut(s) 558, 650, 667
BssMI GATC 6 cut(s) 205, 221, 781, 801, 1048, 1246
Bst4CI ACNGT 2 cut(s) 116, 198
Bst6I CTCTTC 2 cut(s) 383, 740
BstBAI YACGTR 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 4 cut(s) 286, 582, 976, 1029
BstF5I GGATG 2 cut(s) 336, 536
BstKTI GATC 6 cut(s) 208, 224, 784, 804, 1051, 1249
BstMAI GTCTC 2 cut(s) 356, 850
BstMBI GATC 6 cut(s) 205, 221, 781, 801, 1048, 1246
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstSCI CCNGG 2 cut(s) 706, 1017
BstSFI CTRYAG 3 cut(s) 39, 303, 543
BstSLI GKGCMC 2 cut(s) 130, 771
BstV1I GCAGC 2 cut(s) 289, 311
BstX2I RGATCY 2 cut(s) 205, 221
BstYI RGATCY 2 cut(s) 205, 221
BsuI GTATCC 1 cut(s) 1315
BsuRI GGCC 3 cut(s) 700, 724, 950
BtrI CACGTC 1 cut(s) 1242
BtsCI GGATG 2 cut(s) 336, 536
BtsIMutI CAGTG 1 cut(s) 1074
Cac8I GCNNGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 647, 698
Csp6I GTAC 2 cut(s) 998, 1066
CviAII CATG 2 cut(s) 734, 964
CviQI GTAC 2 cut(s) 998, 1066
DdeI CTNAG 4 cut(s) 286, 582, 976, 1029
DpnI GATC 6 cut(s) 207, 223, 783, 803, 1050, 1248
DpnII GATC 6 cut(s) 205, 221, 781, 801, 1048, 1246
EaeI YGGCCR 1 cut(s) 948
Eam1104I CTCTTC 2 cut(s) 383, 740
EarI CTCTTC 2 cut(s) 383, 740
Eco147I AGGCCT 1 cut(s) 724
Eco31I GGTCTC 2 cut(s) 356, 850
Eco47I GGWCC 1 cut(s) 647
Eco88I CYCGRG 2 cut(s) 385, 1002
EcoO109I RGGNCCY 1 cut(s) 698
FaeI CATG 2 cut(s) 737, 967
FatI CATG 2 cut(s) 733, 963
FauI CCCGC 2 cut(s) 211, 288
FauNDI CATATG 1 cut(s) 479
FblI GTMKAC 2 cut(s) 436, 972
Fnu4HI GCNGC 2 cut(s) 300, 303
FokI GGATG 2 cut(s) 343, 523
Fsp4HI GCNGC 2 cut(s) 300, 303
FspBI CTAG 2 cut(s) 773, 1336
GluI GCNGC 2 cut(s) 300, 303
HaeIII GGCC 3 cut(s) 700, 724, 950
HapII CCGG 3 cut(s) 708, 1018, 1052
Hin1II CATG 2 cut(s) 737, 967
HincII GTYRAC 1 cut(s) 973
HindII GTYRAC 1 cut(s) 973
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 6 cut(s) 239, 383, 875, 1042, 1079, 1203
HpaII CCGG 3 cut(s) 708, 1018, 1052
HphI GGTGA 5 cut(s) 150, 257, 458, 462, 845
Hpy166II GTNNAC 2 cut(s) 437, 973
Hpy188I TCNGA 5 cut(s) 140, 529, 911, 1084, 1246
Hpy188III TCNNGA 5 cut(s) 209, 387, 1004, 1046, 1052
Hpy8I GTNNAC 2 cut(s) 437, 973
Hpy99I CGWCG 1 cut(s) 1120
HpyAV CCTTC 5 cut(s) 27, 830, 863, 890, 1318
HpyCH4III ACNGT 2 cut(s) 116, 198
HpyCH4IV ACGT 2 cut(s) 521, 1241
HpyCH4V TGCA 6 cut(s) 299, 305, 334, 425, 659, 1234
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 4 cut(s) 286, 582, 976, 1029
HpySE526I ACGT 2 cut(s) 521, 1241
Hsp92II CATG 2 cut(s) 737, 967
Kpn2I TCCGGA 1 cut(s) 1051
Kzo9I GATC 6 cut(s) 205, 221, 781, 801, 1048, 1246
Lsp1109I GCAGC 2 cut(s) 289, 311
LweI GCATC 4 cut(s) 321, 439, 545, 631
MaeI CTAG 2 cut(s) 773, 1336
MaeII ACGT 2 cut(s) 521, 1241
MaeIII GTNAC 4 cut(s) 85, 517, 598, 1024
MalI GATC 6 cut(s) 207, 223, 783, 803, 1050, 1248
MbiI CCGCTC 1 cut(s) 1063
MboI GATC 6 cut(s) 205, 221, 781, 801, 1048, 1246
MboII GAAGA 4 cut(s) 153, 370, 757, 1097
MflI RGATCY 2 cut(s) 205, 221
MhlI GDGCHC 2 cut(s) 130, 771
MlsI TGGCCA 1 cut(s) 950
MluNI TGGCCA 1 cut(s) 950
MlyI GAGTC 3 cut(s) 377, 1036, 1073
MmeI TCCRAC 1 cut(s) 718
MnlI CCTC 9 cut(s) 386, 406, 550, 714, 734, 796, 1011, 1118, 1150
Mox20I TGGCCA 1 cut(s) 950
MroI TCCGGA 1 cut(s) 1051
MroXI GAANNNNTTC 2 cut(s) 145, 921
MscI TGGCCA 1 cut(s) 950
MseI TTAA 3 cut(s) 255, 960, 1178
Msp20I TGGCCA 1 cut(s) 950
MspA1I CMGCKG 2 cut(s) 218, 302
MspI CCGG 3 cut(s) 708, 1018, 1052
MspR9I CCNGG 2 cut(s) 708, 1019
Mva1269I GAATGC 1 cut(s) 1236
MwoI GCNNNNNNNGC 1 cut(s) 340
NciI CCSGG 2 cut(s) 708, 1019
NdeI CATATG 1 cut(s) 479
NdeII GATC 6 cut(s) 205, 221, 781, 801, 1048, 1246
NlaIII CATG 2 cut(s) 737, 967
NlaIV GGNNCC 5 cut(s) 207, 223, 277, 699, 768
NmuCI GTSAC 1 cut(s) 517
PaeR7I CTCGAG 2 cut(s) 385, 1002
PceI AGGCCT 1 cut(s) 724
PctI GAATGC 1 cut(s) 1236
PdmI GAANNNNTTC 2 cut(s) 145, 921
PfeI GAWTC 3 cut(s) 239, 875, 1203
PkrI GCNGC 2 cut(s) 301, 304
PleI GAGTC 3 cut(s) 377, 1036, 1073
PpsI GAGTC 3 cut(s) 377, 1036, 1073
Ppu21I YACGTR 1 cut(s) 522
PspN4I GGNNCC 5 cut(s) 207, 223, 277, 699, 768
PspPI GGNCC 2 cut(s) 647, 698
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 2 cut(s) 205, 221
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 2 cut(s) 999, 1067
RsaNI GTAC 2 cut(s) 998, 1066
SalI GTCGAC 1 cut(s) 971
SaqAI TTAA 3 cut(s) 255, 960, 1178
SatI GCNGC 2 cut(s) 300, 303
Sau3AI GATC 6 cut(s) 205, 221, 781, 801, 1048, 1246
Sau96I GGNCC 2 cut(s) 647, 698
SchI GAGTC 3 cut(s) 377, 1036, 1073
ScrFI CCNGG 2 cut(s) 708, 1019
SduI GDGCHC 2 cut(s) 130, 771
SetI ASST 8 cut(s) 304, 316, 355, 524, 575, 592, 1003, 1244
SfaNI GCATC 4 cut(s) 321, 439, 545, 631
SfcI CTRYAG 3 cut(s) 39, 303, 543
Sfr274I CTCGAG 2 cut(s) 385, 1002
SinI GGWCC 1 cut(s) 647
SlaI CTCGAG 2 cut(s) 385, 1002
SmlI CTYRAG 2 cut(s) 385, 1002
SmoI CTYRAG 2 cut(s) 385, 1002
SseBI AGGCCT 1 cut(s) 724
SsiI CCGC 4 cut(s) 218, 281, 890, 1063
SspI AATATT 2 cut(s) 613, 1194
SspMI CTAG 2 cut(s) 773, 1336
StuI AGGCCT 1 cut(s) 724
StyD4I CCNGG 2 cut(s) 706, 1017
TaaI ACNGT 2 cut(s) 116, 198
TaiI ACGT 2 cut(s) 524, 1244
TaqI TCGA 6 cut(s) 381, 386, 972, 1003, 1115, 1155
TfiI GAWTC 3 cut(s) 239, 875, 1203
Tru1I TTAA 3 cut(s) 255, 960, 1178
Tru9I TTAA 3 cut(s) 255, 960, 1178
TscAI CASTG 1 cut(s) 1081
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 2 cut(s) 299, 302
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 7 cut(s) 9, 56, 275, 1089, 1139, 1146, 1227
TspGWI ACGGA 1 cut(s) 915
TspRI CASTG 1 cut(s) 1081
VpaK11BI GGWCC 1 cut(s) 647
XapI RAATTY 4 cut(s) 145, 391, 917, 1267
XcmI CCANNNNNNNNNTGG 1 cut(s) 806
XhoI CTCGAG 2 cut(s) 385, 1002
XmiI GTMKAC 2 cut(s) 436, 972
XmnI GAANNNNTTC 2 cut(s) 145, 921
XspI CTAG 2 cut(s) 773, 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.