FvH4_6g02640

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000230
Physical Location & Seq
Forward (+)
1516700 .. 1517752
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02640.t1

Sequence Viewer

Length: 1053 bp
ATGGCTGATACTGGGAGCCATCTACTATGGACGCAATGTGAACCGTGTAAGGCTTGCTACAAATCAAATTTTGGCATTTTTGATCCAAGCAAATCCTCAACTTATAGGAAGATTAATTGTCGTGCAAGAGATTGTAGACTCGTCGGTCATTTCAAACCACAAGACTATGAACCAAACTATTGTAGAGAAGATGGTAAAAGACCATGCCTTTATAGCTACTCGTATGCAGACACGGCAACAACGACTGGTGTATTGTCTAAAGAAACAGTTACCCTGTCCACTACCAGTAGAGTTGTAACTCTACAAAATATTGTCTTTGGGTGTGGGTATGCGAATAATGAAACTGTTAATTCTGGAAATGAAATGGGAGTTATAGGGCTTGGGCGTGGGCCCTTGTCATTTGTTTCTCAGATAGCTCCTTATGTTGGAGGCAAAAAGTTCTCGCATTGCCTCGTAGATGAGGATTCTGATAAAATAAGTAAGATTTTTTTCGGGAATGGGAGTGAAGTTTTGGGTGAAGGGGTGGTGTCAACACCTTTGGTCGATACAACCCCAGAAGAGATGAGTTATTTTGTGACAGTAACAGGAATTTCCTTCGGGAATGAATTTGTCTCTTATAACTCAATTGGAACATTGCTCAAGAAAGGTAACGTGGTAATCGATTCTGGTACACCTGTGACACGTTTGCCACAAGATTTTTTCGACCGGATAGTAATCCAATTAAAAAAGATGGTTAAATTAGAGTCATTCGTTAAAAGTTACGTGACAAGTAGTACAAGTAATCTTTGCTTCAACACCACGACGCCTCCAAAATTACCGACTGTTTCTGTACATTTTGAAGGTGGTGGCAAGCTGCAATTAGCAGATAAACAATTACTTTATGGAGAAGAGGAAGATGTATTTTGCTTTGGATTGGCAAAACACACAATCGACGGCAAGGACTTTAGCAATGTCGGTATATATGGAGGTCAACTTCAGACTAATATGTTTATTGGTTTTGATCTGGACAAAAATTTGATTTCCTTCAAGCCAACTAATTGCGAAAACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

351

Amino Acids

38.47

Weight (kDa)

6.01

Isoelectric Point (pI)

20.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 2 - 166 1.2e-44 Xylanase inhibitor N-terminal
Asp PF00026 71 - 342 1.1e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 189 - 343 3.2e-25 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AasI GACNNNNNNGTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 136
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 4 cut(s) 67, 588, 605, 1012
AcuI CTGAAG 1 cut(s) 959
AcyI GRCGYC 1 cut(s) 803
AfaI GTAC 3 cut(s) 670, 775, 831
AfiI CCNNNNNNNGG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 680
AgsI TTSAA 4 cut(s) 154, 793, 839, 1027
AluBI AGCT 3 cut(s) 216, 416, 853
AluI AGCT 3 cut(s) 216, 416, 853
Alw26I GTCTC 1 cut(s) 616
AlwI GGATC 1 cut(s) 77
AoxI GGCC 1 cut(s) 389
ApaI GGGCCC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 853
ApoI RAATTY 4 cut(s) 67, 588, 605, 1012
AseI ATTAAT 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 389, 390
AsuHPI GGTGA 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 393
BaeI ACNNNNGTAYC 2 cut(s) 660, 693
BanII GRGCYC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 840
BccI CCATC 3 cut(s) 27, 185, 724
BceAI ACGGC 2 cut(s) 249, 949
BcoDI GTCTC 1 cut(s) 616
BisI GCNGC 1 cut(s) 854
BlsI GCNGC 1 cut(s) 855
BmgT120I GGNCC 2 cut(s) 389, 390
BmiI GGNNCC 2 cut(s) 17, 391
BmrI ACTGGG 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 623
Bsa29I ATCGAT 1 cut(s) 660
BsaAI YACGTR 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 713
BsaHI GRCGYC 1 cut(s) 803
BsaWI WCCGGW 1 cut(s) 705
BsaXI ACNNNNNCTCC 2 cut(s) 790, 820
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 16, 250, 285
Bse3DI GCAATG 4 cut(s) 41, 445, 632, 955
Bse8I GATNNNNATC 1 cut(s) 713
BseCI ATCGAT 1 cut(s) 660
BseJI GATNNNNATC 1 cut(s) 713
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 4 cut(s) 41, 445, 632, 955
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 3 cut(s) 16, 250, 285
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 1 cut(s) 840
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 1 cut(s) 391
BshVI ATCGAT 1 cut(s) 660
BsiEI CGRYCG 1 cut(s) 706
BsiSI CCGG 1 cut(s) 706
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 616
BsnI GGCC 1 cut(s) 391
Bsp120I GGGCCC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 393
Bsp1407I TGTACA 1 cut(s) 829
Bsp143I GATC 2 cut(s) 82, 1000
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 421
BspDI ATCGAT 1 cut(s) 660
BspLI GGNNCC 2 cut(s) 17, 391
BspPI GGATC 1 cut(s) 77
BsrDI GCAATG 4 cut(s) 41, 445, 632, 955
BsrGI TGTACA 1 cut(s) 829
BsrI ACTGG 3 cut(s) 16, 250, 285
BssMI GATC 2 cut(s) 82, 1000
BssNI GRCGYC 1 cut(s) 803
Bst4CI ACNGT 5 cut(s) 45, 268, 346, 580, 823
Bst6I CTCTTC 2 cut(s) 552, 882
BstACI GRCGYC 1 cut(s) 803
BstAUI TGTACA 1 cut(s) 829
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 55, 851
BstDEI CTNAG 1 cut(s) 408
BstKTI GATC 2 cut(s) 85, 1003
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 2 cut(s) 82, 1000
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 2 cut(s) 213, 233
BstSLI GKGCMC 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 840
Bsu15I ATCGAT 1 cut(s) 660
BsuRI GGCC 1 cut(s) 391
BsuTUI ATCGAT 1 cut(s) 660
Cac8I GCNNGC 2 cut(s) 55, 851
Cfr13I GGNCC 2 cut(s) 389, 390
ClaI ATCGAT 1 cut(s) 660
CseI GACGC 2 cut(s) 40, 811
Csp6I GTAC 3 cut(s) 669, 774, 830
CviAII CATG 1 cut(s) 204
CviJI RGCY 9 cut(s) 5, 18, 53, 216, 379, 391, 416, 853, 1030
CviKI_1 RGCY 9 cut(s) 5, 18, 53, 216, 379, 391, 416, 853, 1030
CviQI GTAC 3 cut(s) 669, 774, 830
DdeI CTNAG 1 cut(s) 408
DpnI GATC 2 cut(s) 84, 1002
DpnII GATC 2 cut(s) 82, 1000
DrdI GACNNNNNNGTC 1 cut(s) 144
DseDI GACNNNNNNGTC 1 cut(s) 144
Eam1104I CTCTTC 2 cut(s) 552, 882
EarI CTCTTC 2 cut(s) 552, 882
Eco24I GRGCYC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 959
EcoO109I RGGNCCY 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 393
FaeI CATG 1 cut(s) 207
FatI CATG 1 cut(s) 203
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 854
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 1 cut(s) 854
GluI GCNGC 1 cut(s) 854
HaeIII GGCC 1 cut(s) 391
HapII CCGG 1 cut(s) 706
HgaI GACGC 2 cut(s) 40, 811
Hin1I GRCGYC 1 cut(s) 803
Hin1II CATG 1 cut(s) 207
HincII GTYRAC 2 cut(s) 531, 971
HindII GTYRAC 2 cut(s) 531, 971
HinfI GANTC 4 cut(s) 138, 464, 662, 743
HpaII CCGG 1 cut(s) 706
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 6 cut(s) 41, 137, 279, 531, 671, 971
Hpy188I TCNGA 3 cut(s) 411, 469, 978
Hpy188III TCNNGA 5 cut(s) 354, 493, 598, 640, 1004
Hpy8I GTNNAC 6 cut(s) 41, 137, 279, 531, 671, 971
Hpy99I CGWCG 3 cut(s) 146, 805, 935
HpyAV CCTTC 4 cut(s) 512, 604, 833, 1033
HpyCH4III ACNGT 5 cut(s) 45, 268, 346, 580, 823
HpyCH4IV ACGT 3 cut(s) 651, 682, 762
HpyCH4V TGCA 3 cut(s) 125, 227, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 233
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 3 cut(s) 651, 682, 762
Hsp92I GRCGYC 1 cut(s) 803
Hsp92II CATG 1 cut(s) 207
Kzo9I GATC 2 cut(s) 82, 1000
LmnI GCTCC 2 cut(s) 15, 421
Lsp1109I GCAGC 1 cut(s) 840
MaeII ACGT 3 cut(s) 651, 682, 762
MaeIII GTNAC 8 cut(s) 268, 295, 574, 580, 647, 676, 758, 763
MalI GATC 2 cut(s) 84, 1002
MboI GATC 2 cut(s) 82, 1000
MboII GAAGA 5 cut(s) 121, 200, 569, 899, 905
MfeI CAATTG 1 cut(s) 624
MhlI GDGCHC 1 cut(s) 393
MlyI GAGTC 2 cut(s) 132, 752
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 7 cut(s) 106, 422, 454, 461, 816, 883, 959
MseI TTAA 5 cut(s) 114, 348, 722, 735, 753
MspI CCGG 1 cut(s) 706
MunI CAATTG 1 cut(s) 624
MwoI GCNNNNNNNGC 2 cut(s) 213, 233
NdeII GATC 2 cut(s) 82, 1000
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 2 cut(s) 17, 391
NmuCI GTSAC 3 cut(s) 574, 676, 763
PcsI WCGNNNNNNNCGW 2 cut(s) 239, 657
PfeI GAWTC 2 cut(s) 464, 662
PkrI GCNGC 1 cut(s) 855
PleI GAGTC 2 cut(s) 132, 751
PpsI GAGTC 2 cut(s) 132, 751
Ppu21I YACGTR 1 cut(s) 763
PshBI ATTAAT 1 cut(s) 114
PsiI TTATAA 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 17, 391
PspOMI GGGCCC 1 cut(s) 389
PspPI GGNCC 2 cut(s) 389, 390
RsaI GTAC 3 cut(s) 670, 775, 831
RsaNI GTAC 3 cut(s) 669, 774, 830
SaqAI TTAA 5 cut(s) 114, 348, 722, 735, 753
SatI GCNGC 1 cut(s) 854
Sau3AI GATC 2 cut(s) 82, 1000
Sau96I GGNCC 2 cut(s) 389, 390
SchI GAGTC 2 cut(s) 132, 752
SduI GDGCHC 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
SspI AATATT 1 cut(s) 310
TaaI ACNGT 5 cut(s) 45, 268, 346, 580, 823
TaiI ACGT 3 cut(s) 654, 685, 765
TaqI TCGA 4 cut(s) 543, 660, 702, 930
TaqII GACCGA 1 cut(s) 134
TatI WGTACW 2 cut(s) 773, 829
TfiI GAWTC 2 cut(s) 464, 662
Tru1I TTAA 5 cut(s) 114, 348, 722, 735, 753
Tru9I TTAA 5 cut(s) 114, 348, 722, 735, 753
TseFI GTSAC 3 cut(s) 574, 676, 763
TseI GCWGC 1 cut(s) 853
Tsp45I GTSAC 3 cut(s) 574, 676, 763
TspDTI ATGAA 4 cut(s) 183, 354, 375, 618
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 4 cut(s) 67, 588, 605, 1012
XmiI GTMKAC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.