Rroxscaffold_6G00428270

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000230
Physical Location & Seq
Forward (+)
48725508 .. 48729798
4291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428270.1

Sequence Viewer

Length: 777 bp
ATGGGTCTTTTGGATAAAGAAACAGTTACCTTGACATCCACTACAAGTAAAGTTGTAGCCCTAAAAGATATTATTTTTGGGTGTGGGTATAAAAACAATGAATCTATTTTAAGTGGAAATATAATGGGAATGATTGGGCTTGGACCTGGGCCATTATCATTGATTTCTCAAATTGCTCCCTATGTTGGAGGCAAAAGATTTTCTTATTGCTTGGTGCAAGATTCCAAAATCCAAAGCAAGATCTATTTCGGGAATGAGAGTGAAGTTTTGGGTGAAGGAGTGGTGACAACCCCTATGGTCGATATTGAACCAAACGAGAAGAGTTATCTTGTCACGGTATTAGGAATTACCATCGAAAATGAGTTTCTTTCTTTTAACTCAACTGGGACATTACTTAAGAAAGGTAACATGAATATCAACAGCGGTACATCTACGTCACGTTTACCACAAGACTATTTTGACCGGATGGTAACTCGGCTAAAAAAGGTAGTTAAATTGGAGTCATTCATATATACCAAGGATATGATGAGTCTCCTTTGCTTTAACTCCACGACGCCTCCAAAATTAACACCAATGGTTTTCCATTTTGAGGGTGGTAGCAAGCTGCCGGTGGCGATGGACCAATTATTTTATGAAGAAATGCCTAGGGCATTTTGCTTAGGAATTTCAAACATAACTAATGGGTATCAAGGTCTTTTTGGAGGTTCTCTACAGACAAATCTCTTGATTGGTTTTGACTACGATAAAAAACTAAGATGCATCCCAACAAATCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

258

Amino Acids

28.46

Weight (kDa)

8.18

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 2 - 85 2.9e-18 Xylanase inhibitor N-terminal
TAXi_C PF14541 109 - 249 3.2e-15 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 423
AcsI RAATTY 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 554
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 2 cut(s) 185, 589
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 2 cut(s) 308, 669
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 604
AluI AGCT 1 cut(s) 604
Alw26I GTCTC 1 cut(s) 536
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 604
ApoI RAATTY 1 cut(s) 663
AspA2I CCTAGG 1 cut(s) 644
AspS9I GGNCC 3 cut(s) 143, 149, 619
AsuHPI GGTGA 2 cut(s) 284, 295
AvaII GGWCC 2 cut(s) 143, 619
AvrII CCTAGG 1 cut(s) 644
BbvI GCAGC 1 cut(s) 591
BccI CCATC 3 cut(s) 359, 460, 610
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 1 cut(s) 710
BfrI CTTAAG 1 cut(s) 395
BglII AGATCT 1 cut(s) 240
BisI GCNGC 1 cut(s) 605
BlnI CCTAGG 1 cut(s) 644
BlsI GCNGC 1 cut(s) 606
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 2 cut(s) 143, 619
BmgT120I GGNCC 3 cut(s) 143, 149, 619
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 2 cut(s) 746, 768
BmuI ACTGGG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 658
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 146, 516, 644
BsaWI WCCGGW 1 cut(s) 462
BsaXI ACNNNNNCTCC 2 cut(s) 541, 571
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 589
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 1 cut(s) 388
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 146, 516, 644
BseGI GGATG 3 cut(s) 35, 471, 759
BseLI CCNNNNNNNGG 2 cut(s) 185, 589
BseNI ACTGG 1 cut(s) 388
BseXI GCAGC 1 cut(s) 591
BshFI GGCC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 463, 608
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 2 cut(s) 185, 589
BsmAI GTCTC 1 cut(s) 536
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 1 cut(s) 423
BspANI GGCC 1 cut(s) 151
BspTI CTTAAG 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 146, 516, 644
BssMI GATC 1 cut(s) 240
BssNI GRCGYC 1 cut(s) 554
BssT1I CCWWGG 2 cut(s) 516, 644
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 25, 337
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 554
BstAFI CTTAAG 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 602
BstDEI CTNAG 2 cut(s) 658, 752
BstF5I GGATG 3 cut(s) 35, 471, 759
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 591
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 629
BtsCI GGATG 3 cut(s) 35, 471, 759
Cac8I GCNNGC 1 cut(s) 602
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 3 cut(s) 143, 149, 619
CseI GACGC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 426
CviAII CATG 1 cut(s) 409
CviJI RGCY 5 cut(s) 59, 139, 151, 478, 604
CviKI_1 RGCY 5 cut(s) 59, 139, 151, 478, 604
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 2 cut(s) 658, 752
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 2 cut(s) 516, 644
Eco47I GGWCC 2 cut(s) 143, 619
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 516, 644
EcoT22I ATGCAT 1 cut(s) 761
ErhI CCWWGG 2 cut(s) 516, 644
FaeI CATG 1 cut(s) 412
FalI AAGNNNNNCTT 2 cut(s) 187, 219
FaqI GGGAC 1 cut(s) 400
FatI CATG 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 605
FokI GGATG 3 cut(s) 22, 478, 746
Fsp4HI GCNGC 1 cut(s) 605
FspBI CTAG 1 cut(s) 645
GluI GCNGC 1 cut(s) 605
HaeIII GGCC 1 cut(s) 151
HapII CCGG 2 cut(s) 463, 608
HgaI GACGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 1 cut(s) 412
HinfI GANTC 4 cut(s) 101, 221, 500, 529
HpaII CCGG 2 cut(s) 463, 608
HphI GGTGA 2 cut(s) 284, 295
Hpy166II GTNNAC 1 cut(s) 443
Hpy188III TCNNGA 2 cut(s) 250, 724
Hpy8I GTNNAC 1 cut(s) 443
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 25, 337
HpyCH4IV ACGT 2 cut(s) 434, 439
HpyCH4V TGCA 2 cut(s) 217, 759
HpyF3I CTNAG 2 cut(s) 658, 752
HpySE526I ACGT 2 cut(s) 434, 439
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 1 cut(s) 412
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 132, 159, 369, 476, 621
Lsp1109I GCAGC 1 cut(s) 591
LweI GCATC 2 cut(s) 746, 768
MaeI CTAG 1 cut(s) 645
MaeII ACGT 2 cut(s) 434, 439
MaeIII GTNAC 6 cut(s) 25, 283, 331, 404, 435, 469
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 2 cut(s) 331, 647
MflI RGATCY 1 cut(s) 240
MluCI AATT 6 cut(s) 171, 345, 494, 563, 623, 663
MlyI GAGTC 2 cut(s) 509, 538
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 182, 567, 583, 695
Mph1103I ATGCAT 1 cut(s) 761
MseI TTAA 6 cut(s) 110, 375, 396, 492, 543, 566
MspA1I CMGCKG 1 cut(s) 423
MspCI CTTAAG 1 cut(s) 395
MspI CCGG 2 cut(s) 463, 608
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
NdeII GATC 1 cut(s) 240
NlaIII CATG 1 cut(s) 412
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 3 cut(s) 283, 331, 435
NsiI ATGCAT 1 cut(s) 761
PfeI GAWTC 2 cut(s) 101, 221
PkrI GCNGC 1 cut(s) 606
PleI GAGTC 2 cut(s) 508, 537
PpsI GAGTC 2 cut(s) 508, 537
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspPI GGNCC 3 cut(s) 143, 149, 619
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SaqAI TTAA 6 cut(s) 110, 375, 396, 492, 543, 566
SatI GCNGC 1 cut(s) 605
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 3 cut(s) 143, 149, 619
SchI GAGTC 2 cut(s) 509, 538
ScrFI CCNGG 1 cut(s) 147
SetI ASST 9 cut(s) 32, 148, 406, 437, 442, 489, 606, 694, 706
SfaNI GCATC 2 cut(s) 746, 768
SfcI CTRYAG 1 cut(s) 710
SinI GGWCC 2 cut(s) 143, 619
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 6 cut(s) 171, 345, 494, 563, 623, 663
SsiI CCGC 1 cut(s) 423
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 2 cut(s) 516, 644
TaaI ACNGT 2 cut(s) 25, 337
TaiI ACGT 2 cut(s) 437, 442
TaqI TCGA 2 cut(s) 300, 354
TasI AATT 6 cut(s) 171, 345, 494, 563, 623, 663
TfiI GAWTC 2 cut(s) 101, 221
Tru1I TTAA 6 cut(s) 110, 375, 396, 492, 543, 566
Tru9I TTAA 6 cut(s) 110, 375, 396, 492, 543, 566
TseFI GTSAC 3 cut(s) 283, 331, 435
TseI GCWGC 1 cut(s) 604
Tsp45I GTSAC 3 cut(s) 283, 331, 435
TspDTI ATGAA 4 cut(s) 114, 425, 496, 648
Vha464I CTTAAG 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 143, 619
XapI RAATTY 1 cut(s) 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 590
XmaJI CCTAGG 1 cut(s) 644
XspI CTAG 1 cut(s) 645
Zsp2I ATGCAT 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.