Rw3G002340

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000230
Physical Location & Seq
Reverse (-)
2051695 .. 2052954
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002340.1

Sequence Viewer

Length: 1260 bp
ATGGACACTATCCTTTGTCATGTACACTTTGGTGTAGTACTTGTGACTACTCTTTTCATATATCTTGTATCCTTTTCTGCTACAGCAGCAAGCAATGGTGGATTTAGTGTCCAACTCGTCCACCGAAACTCCCCAAAGTCGCCGTTTTACAATCATAACAAAACTCCTATGATGAGCAAGAAGCCACAGTCACGAGTACAAGCCAACAACGGCCAGTATCTTATGAAGCTCTCACTTGGAAATCCGCTGTTCGATGTTTACGGCATTGCTGATACAGGCAGTGACTTATTATGGGCACAATGTGTACCATGTGAGGGCTGCTATAAGCAAATCAAACCCAAATTCGATCCGAAGAAGTCATCAACATATAGCGACCTACCTTGTGGTGCACAAGAATGTAGTTTGGTTCCTAATTCTTGTTCGACAGAAAATGTTTGCAGTTACCATTACGAATACGGAGACGGTTCGGTGACCAGAGGGGTATTGGCTAAAGAGACCATTTCCTTGGAATCCACGTCTGAGAAGGGTACTGTTGCCCTAAAAGGTATTGCGTTTGGTTGTGGACATAACAATACTGGTGTTTTTAATCAAGATGATATGGGTCTAATTGGCCTTGGAGGAGGCCCTATATCTTTCATTTCTCAAGTGGCTCCCTTAGTTGGAGGCAAGAAGTTCTCATACTGTTTGGTTCCATTTCATACTGACCCTAGTATCGAAAGCAAGATGAGCTTTGGGAAGGGCAGTGAAGTGTTGGGTAATGGTGTTGTGACAGTACCGTTGGTGCCGAAAGACGACACTTTTTATTTTGTGACGGTGGAAGGATTTAGCGTCGGAGATAAGTTTTTGCCTTTCGATTCATCAGGGAAAGTTGAAAAGGGCAACATTTTCCTCGACTCAGGAACACCGCCGACGTATATACCGACGGATTTATATGATCGGTTGGCAGCTGAACTGAGGAAGCAGATTCCGATGGCGCCCATTGAAGATGACCCGGATTTGGGGAATCAGCTGTGTTACAGGACCAAGACTAATCTCAAGGGACCAATATTGACGGTGCATTTTGAGGGGGGTGCTAATATAAAGTTGACACCAACACAAACATTTATTCCACCAAAAGATGAGGTTTTCTGCTTTGCAATGATAGGTGATAACAGTGGTGTTAACATTTATGGAAACTTTGCTCAGACAAATTTCTTGATTGGTATTGACCTTGAAACAAAGGTGGTTTCTTTCAAGCCAAATGATTGCACAAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

419

Amino Acids

45.39

Weight (kDa)

5.79

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 72 - 411 3.3e-12 Eukaryotic aspartyl protease
TAXi_N PF14543 73 - 246 1.6e-49 Xylanase inhibitor N-terminal
TAXi_C PF14541 268 - 412 2.2e-23 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 781, 973
AciI CCGC 2 cut(s) 245, 905
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 2 cut(s) 341, 1189
AcyI GRCGYC 1 cut(s) 974
AdeI CACNNNGTG 1 cut(s) 302
AfaI GTAC 6 cut(s) 24, 39, 198, 306, 529, 774
AfiI CCNNNNNNNGG 4 cut(s) 314, 659, 997, 998
AgsI TTSAA 4 cut(s) 872, 983, 1214, 1234
AjiI CACGTC 1 cut(s) 516
AleI CACNNNNGTG 1 cut(s) 30
AluBI AGCT 4 cut(s) 229, 729, 947, 1009
AluI AGCT 4 cut(s) 229, 729, 947, 1009
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 453, 488
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 1 cut(s) 341
AoxI GGCC 3 cut(s) 211, 610, 622
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 3 cut(s) 86, 318, 944
ApoI RAATTY 2 cut(s) 341, 1189
AspLEI GCGC 1 cut(s) 976
AspS9I GGNCC 3 cut(s) 623, 1020, 1040
AsuC2I CCSGG 1 cut(s) 992
AsuHPI GGTGA 2 cut(s) 481, 1157
AvaII GGWCC 2 cut(s) 1020, 1040
BaeGI GKGCMC 2 cut(s) 298, 391
BaeI ACNNNNGTAYC 2 cut(s) 694, 727
BanI GGYRCC 2 cut(s) 781, 973
BarI GAAGNNNNNNTAC 2 cut(s) 662, 694
BauI CACGAG 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 3 cut(s) 98, 305, 956
BccI CCATC 1 cut(s) 964
BceAI ACGGC 3 cut(s) 127, 226, 277
BciVI GTATCC 1 cut(s) 79
BcnI CCSGG 1 cut(s) 992
BcoDI GTCTC 2 cut(s) 453, 488
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 977
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 3 cut(s) 87, 319, 945
BlsI GCNGC 3 cut(s) 88, 320, 946
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 992
Bme18I GGWCC 2 cut(s) 1020, 1040
BmgBI CACGTC 1 cut(s) 516
BmgT120I GGNCC 3 cut(s) 623, 1020, 1040
BmiI GGNNCC 6 cut(s) 408, 651, 690, 783, 975, 1041
BmrFI CCNGG 1 cut(s) 992
BpuEI CTTGAG 2 cut(s) 627, 1019
BpuMI CCSGG 1 cut(s) 992
BsaHI GRCGYC 1 cut(s) 974
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 504, 613
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 314, 659, 997, 998
Bse1I ACTGG 2 cut(s) 214, 580
Bse3DI GCAATG 3 cut(s) 100, 264, 1143
BseDI CCNNGG 2 cut(s) 504, 613
BseLI CCNNNNNNNGG 4 cut(s) 314, 659, 997, 998
BseMI GCAATG 3 cut(s) 100, 264, 1143
BseMII CTCAG 4 cut(s) 510, 909, 944, 1196
BseNI ACTGG 2 cut(s) 214, 580
BseRI GAGGAG 1 cut(s) 633
BseSI GKGCMC 2 cut(s) 298, 391
BseXI GCAGC 3 cut(s) 98, 305, 956
BshFI GGCC 3 cut(s) 213, 612, 624
BshNI GGYRCC 2 cut(s) 781, 973
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 1 cut(s) 992
BslFI GGGAC 1 cut(s) 1053
BslI CCNNNNNNNGG 4 cut(s) 314, 659, 997, 998
BsmAI GTCTC 2 cut(s) 453, 488
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 1053
BsnI GGCC 3 cut(s) 213, 612, 624
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 2 cut(s) 298, 391
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 2 cut(s) 346, 934
BspACI CCGC 2 cut(s) 245, 905
BspANI GGCC 3 cut(s) 213, 612, 624
BspCNI CTCAG 4 cut(s) 511, 908, 945, 1195
BspLI GGNNCC 6 cut(s) 408, 651, 690, 783, 975, 1041
BspPI GGATC 1 cut(s) 341
BspT107I GGYRCC 2 cut(s) 781, 973
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 3 cut(s) 100, 264, 1143
BsrGI TGTACA 1 cut(s) 22
BsrI ACTGG 2 cut(s) 214, 580
BssECI CCNNGG 2 cut(s) 504, 613
BssMI GATC 2 cut(s) 346, 934
BssNI GRCGYC 1 cut(s) 974
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 504, 613
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 9 cut(s) 189, 464, 532, 683, 772, 777, 814, 1054, 1154
BstACI GRCGYC 1 cut(s) 974
BstAUI TGTACA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 5 cut(s) 519, 655, 895, 953, 1182
BstEII GGTNACC 1 cut(s) 469
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 1 cut(s) 976
BstKTI GATC 2 cut(s) 349, 937
BstMAI GTCTC 2 cut(s) 453, 488
BstMBI GATC 2 cut(s) 346, 934
BstMWI GCNNNNNNNGC 2 cut(s) 86, 726
BstPI GGTNACC 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 990
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 2 cut(s) 298, 391
BstV1I GCAGC 3 cut(s) 98, 305, 956
BstXI CCANNNNNNTGG 1 cut(s) 505
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 3 cut(s) 213, 612, 624
BtrI CACGTC 1 cut(s) 516
BtsI GCAGTG 2 cut(s) 286, 748
BtsIMutI CAGTG 3 cut(s) 286, 748, 1159
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 1 cut(s) 976
Cfr13I GGNCC 3 cut(s) 623, 1020, 1040
CseI GACGC 1 cut(s) 817
Csp6I GTAC 6 cut(s) 23, 38, 197, 305, 528, 773
CviAII CATG 2 cut(s) 20, 309
CviQI GTAC 6 cut(s) 23, 38, 197, 305, 528, 773
DdeI CTNAG 5 cut(s) 519, 655, 895, 953, 1182
DinI GGCGCC 1 cut(s) 975
DpnI GATC 2 cut(s) 348, 936
DpnII GATC 2 cut(s) 346, 934
DraIII CACNNNGTG 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 504, 613
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 1020, 1040
Eco91I GGTNACC 1 cut(s) 469
EcoO109I RGGNCCY 1 cut(s) 623
EcoO65I GGTNACC 1 cut(s) 469
EcoT14I CCWWGG 2 cut(s) 504, 613
EgeI GGCGCC 1 cut(s) 975
EheI GGCGCC 1 cut(s) 975
ErhI CCWWGG 2 cut(s) 504, 613
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 2 cut(s) 23, 312
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 1 cut(s) 1053
FatI CATG 2 cut(s) 19, 308
Fnu4HI GCNGC 3 cut(s) 87, 319, 945
Fsp4HI GCNGC 3 cut(s) 87, 319, 945
FspBI CTAG 1 cut(s) 708
GlaI GCGC 1 cut(s) 975
GluI GCNGC 3 cut(s) 87, 319, 945
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 3 cut(s) 213, 612, 624
HapII CCGG 1 cut(s) 992
HgaI GACGC 1 cut(s) 817
HhaI GCGC 1 cut(s) 976
Hin1I GRCGYC 1 cut(s) 974
Hin1II CATG 2 cut(s) 23, 312
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HincII GTYRAC 2 cut(s) 1086, 1162
HindII GTYRAC 2 cut(s) 1086, 1162
HinfI GANTC 5 cut(s) 509, 854, 893, 964, 1003
HpaI GTTAAC 1 cut(s) 1162
HpaII CCGG 1 cut(s) 992
HphI GGTGA 2 cut(s) 481, 1157
Hpy166II GTNNAC 8 cut(s) 25, 121, 259, 305, 389, 563, 1086, 1162
Hpy188I TCNGA 5 cut(s) 351, 520, 833, 969, 1185
Hpy188III TCNNGA 4 cut(s) 192, 590, 897, 1195
Hpy8I GTNNAC 8 cut(s) 25, 121, 259, 305, 389, 563, 1086, 1162
Hpy99I CGWCG 3 cut(s) 833, 913, 925
HpyAV CCTTC 3 cut(s) 517, 730, 812
HpyCH4III ACNGT 9 cut(s) 189, 464, 532, 683, 772, 777, 814, 1054, 1154
HpyCH4IV ACGT 2 cut(s) 515, 911
HpyCH4V TGCA 5 cut(s) 389, 438, 1057, 1136, 1248
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 726
HpyF3I CTNAG 5 cut(s) 519, 655, 895, 953, 1182
HpySE526I ACGT 2 cut(s) 515, 911
Hsp92I GRCGYC 1 cut(s) 974
Hsp92II CATG 2 cut(s) 23, 312
HspAI GCGC 1 cut(s) 974
KasI GGCGCC 1 cut(s) 973
KspAI GTTAAC 1 cut(s) 1162
Kzo9I GATC 2 cut(s) 346, 934
LmnI GCTCC 1 cut(s) 655
LpnPI CCDG 8 cut(s) 227, 261, 487, 561, 846, 882, 1003, 1005
Lsp1109I GCAGC 3 cut(s) 98, 305, 956
MaeI CTAG 1 cut(s) 708
MaeII ACGT 2 cut(s) 515, 911
MaeIII GTNAC 8 cut(s) 43, 189, 281, 440, 469, 766, 808, 1013
MalI GATC 2 cut(s) 348, 936
MboI GATC 2 cut(s) 346, 934
MboII GAAGA 2 cut(s) 364, 995
MhlI GDGCHC 2 cut(s) 298, 391
MluCI AATT 4 cut(s) 341, 412, 606, 1189
Mly113I GGCGCC 1 cut(s) 974
MlyI GAGTC 1 cut(s) 887
MmeI TCCRAC 3 cut(s) 136, 640, 811
MnlI CCTC 9 cut(s) 307, 470, 611, 614, 656, 899, 948, 1057, 1114
MseI TTAA 3 cut(s) 585, 1161, 1258
MslI CAYNNNNRTG 2 cut(s) 30, 394
MspA1I CMGCKG 3 cut(s) 247, 947, 1009
MspI CCGG 1 cut(s) 992
MspR9I CCNGG 1 cut(s) 992
MwoI GCNNNNNNNGC 2 cut(s) 86, 726
NarI GGCGCC 1 cut(s) 974
NciI CCSGG 1 cut(s) 992
NdeII GATC 2 cut(s) 346, 934
NlaIII CATG 2 cut(s) 23, 312
NlaIV GGNNCC 6 cut(s) 408, 651, 690, 783, 975, 1041
NmuCI GTSAC 6 cut(s) 43, 189, 281, 469, 766, 808
OliI CACNNNNGTG 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 917
PfeI GAWTC 4 cut(s) 509, 854, 964, 1003
PkrI GCNGC 3 cut(s) 88, 320, 946
PleI GAGTC 1 cut(s) 887
PluTI GGCGCC 1 cut(s) 977
PpsI GAGTC 1 cut(s) 887
PspEI GGTNACC 1 cut(s) 469
PspN4I GGNNCC 6 cut(s) 408, 651, 690, 783, 975, 1041
PspPI GGNCC 3 cut(s) 623, 1020, 1040
PvuII CAGCTG 2 cut(s) 947, 1009
RsaI GTAC 6 cut(s) 24, 39, 198, 306, 529, 774
RsaNI GTAC 6 cut(s) 23, 38, 197, 305, 528, 773
RseI CAYNNNNRTG 2 cut(s) 30, 394
SaqAI TTAA 3 cut(s) 585, 1161, 1258
SatI GCNGC 3 cut(s) 87, 319, 945
Sau3AI GATC 2 cut(s) 346, 934
Sau96I GGNCC 3 cut(s) 623, 1020, 1040
ScaI AGTACT 1 cut(s) 39
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 1 cut(s) 992
SduI GDGCHC 2 cut(s) 298, 391
SfcI CTRYAG 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 975
SinI GGWCC 2 cut(s) 1020, 1040
SmiMI CAYNNNNRTG 2 cut(s) 30, 394
SmlI CTYRAG 2 cut(s) 642, 1034
SmoI CTYRAG 2 cut(s) 642, 1034
Sse9I AATT 4 cut(s) 341, 412, 606, 1189
SsiI CCGC 2 cut(s) 245, 905
SspDI GGCGCC 1 cut(s) 973
SspI AATATT 1 cut(s) 1047
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 1 cut(s) 990
StyI CCWWGG 2 cut(s) 504, 613
TaaI ACNGT 9 cut(s) 189, 464, 532, 683, 772, 777, 814, 1054, 1154
TaiI ACGT 2 cut(s) 518, 914
TaqI TCGA 6 cut(s) 252, 345, 422, 714, 852, 891
TasI AATT 4 cut(s) 341, 412, 606, 1189
TatI WGTACW 3 cut(s) 22, 37, 196
TfiI GAWTC 4 cut(s) 509, 854, 964, 1003
Tru1I TTAA 3 cut(s) 585, 1161, 1258
Tru9I TTAA 3 cut(s) 585, 1161, 1258
TscAI CASTG 3 cut(s) 286, 748, 1159
TseFI GTSAC 6 cut(s) 43, 189, 281, 469, 766, 808
TseI GCWGC 3 cut(s) 86, 318, 944
Tsp45I GTSAC 6 cut(s) 43, 189, 281, 469, 766, 808
TspDTI ATGAA 5 cut(s) 46, 239, 625, 686, 846
TspGWI ACGGA 2 cut(s) 471, 938
TspRI CASTG 3 cut(s) 286, 748, 1159
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 2 cut(s) 1020, 1040
XapI RAATTY 2 cut(s) 341, 1189
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XspI CTAG 1 cut(s) 708
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.