Rorug02G0627600

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
74283085 .. 74288839
5755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0627600.1

Sequence Viewer

Length: 2736 bp
ATGGATTTGGTGAATAGTTACAAGGGGGTTGTAGGTCTCGTCTTCGGCAATGAGAAATCTGCTTCTTCAAATGAAGATAGTTACGTTGAGCGATTGCTGGACTGTATAAGCAATGGGAAGCTGGCAGAGGACAGGAGGACTGCTATGGTGGAGCTTCAGTCTGTTGTGGCAGAGAGCTCTGGTGCTCAGCTGGCATTCGGAGCAATGGGCTTTCCTGTGATGATGGGTGTATTGAGAGAAGAGCGCGACGATGTTGAAATGGTCCGAGGTGCCCTTGAAACTCTTGTAGGTGCATTGACTCCTATTGAACATGCAAAAGTCCCAAAAAATGACATTCAATCTGCTCTAATGAACACTGATTTGCTTTCCAGAGAAGCAGACAGCATTTCACTTCTCTTAAGTTTGTTGTCAGAGGAGGATTTCTATGTACGATATTACACTCTTCAACTTTTGACAGCTCTTCTCACAAATTCTCCAAATAGGTTACAGGAAGCCATTCTGACCATACCTCGTGGTATAACTCGCCTAATGGATATGCTTATGGATCGGGAGGTTATACGAAATGAGGCCTTATTACTTCTTACTTACTTGACACGTGAAGCTGAGGAAATTCAAAAATTTGTGGTCTTTGAAGGTGCTTTTGAAAAGATTTTCAGCATCATCAAAGAGGAAGGTGGCTCAGACGGTGGTGTTGTTGTCCAGGACTGTATTGAACTGTTAAACAACCTTATTCGGAAGAATGCATCTAATCAGATACTATTGAGGGAGACAATTGGATTTGACCCATTAATGTCAATTTTGAAGTTACGAGGAAGTACTTACAGTTTCACTCAACAAAAGACAATTAATCTACTCAGTTCGTTGGAAACTATTAATTTGCTGATAATGGGAGGTTCAGAGGCTGATCCTGGAAAAGATGCAAATAAGCTGACAAACAAGACAACTCTTGTTCAGAAAAAAATCTTGGACCATCTTCTAATGCTGGGTGTAGAGAGCCAGTGGGCACCTGTAGCTGTCCGTTGTGCAGCATTACAATGCATCGGTAATCTAATTATCGGACATTCCAAGAATCTTGATGCCCTTGCAAGCAAAGTTCTCGGAGAGGGGCCACAGGAAGCTGCTCTGAACTCAATTCTACGAATCATCTTAAGGACATCTAGTGTACAAGAATTTGTTGCAGCTGATTATGTTTTTAAGAGCTTTTGTGAGAAAAATGCTGATGGCCAAACAATGTTAGCATCAACATTGATTCCTCAACCACATTCAATGACTCATGCACCCCTTGAGGAAGATGTGAACATGTCATTTGGAAGCATGCTGTTACAAGGTCTTACCTTGAGTGAGAGTGAAGTCGATCTTGAGACATGTTGCAGAGCTGCCAGTGTTCTATCTCATGTCATGAAGGACAATATCCAGTGCAAGGAAAAGGTGTTGCATATTGACCTTGAGGCACCTACGCCATCTTTAGGCGCTTCTGAGCCTCTAATGCATCGCGTGGTAAAATACTTGGCCCTTTCCTCTTCCATGAAAAGCAAAGATGGAAAGTCAGGTGGAAATGCATATATTCAACCAATCCTCTTGAAAATGCTGGTGACCTGGCTAGCTGATTGCCCTAGTGCTGTTCATTGCTTCCTAGATTCACGTCCCCACATCACATATCTGCTTGAACTGGTATCCAGTTCATCCGCTACAGTGTTCGTAAAGGGATTGGCGGCTGTTCTTCTGGGAGAGTGTGTTATCTACAATAAATCAGGTGAAAGTGGGAAAGATGCTTTTACTGTAGTTGATTCCATAAGCCAGAAGGTTGGACTCACATCATACTTTCTGAAGTTTGATGAAATGAGAAAAAACTTCCTTTTCACCTCTGCAAGGTCTGCTGAGCCCCGTCAACAATTAACCAGATCTGCTTCTGCTGGTATGGTAGAGCCTGAAGATGTTGATGGGAACAATTTATCTGATCAGAAAGATGAGGATCTACCGGTTCTCTCCTCAATCTTTGATGCTGCATTTGTAAACCTTGTTAAGAGTTTAGAGGCAAACATCAGAGAAAATATCGTTGAGGTTTACAGTAATCCAAAGAGCAAGGTGGCAGTGGTGCCAGCAGAATTGGAACAAAAGAGTGGGGAAAGTGATGGAGAGTATGTTAAGCGGCTGAAAGAATTTGTGGAAAAGCAATGCTCTGAGATACAGGACCTCCTCGGCCGCAATGCAAGCTTGGCTGAGGACGTGGCAGCAACTGGTGGGGGAAGTCATTCTCGGTCTGAGCAAGGCACAGGCTCAGATAGAGTTCATGTAGAGACGCTTAGACGAGATCTTCAAGAAGCATCTAGGCGGTTGGAGTTGCTCAAGGCAGAGAAAGCCAAGATTGAATCTGAGGCATCCATGTATAAAAATTTAGCTGGCAAGATGGAATCCGACCTGAAGAGTCTATCGGATGCTTACAACAGTCTTGAGCAGGCCAATTTCCAACTAGAAAAGGAGGTAAGAGGTCAAAAGGGTGTGGGGTCTTCAGCCTTTCCAGATGTGGATGCAATTAGAGCTCAGGCAAGGGAAGAAGCTCAGAAGGAGAGCGAGGCAGAACTGAATGATCTTCTCGTGTGCCTTGGACAAGAACAGAGCAAGGTCGAAAAGCTTAGTGCCAGGTTGTTGGAGTTGGGGGAGGACGTGGACAAGCTGCTTGAAGATATCGGAGATGATATGGGATTGCCTGGAGATGGTGAAGAGGAGGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

911

Amino Acids

99.82

Weight (kDa)

4.82

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Uso1_p115_head PF04869 375 - 684 2.9e-25 Uso1 / p115 like vesicle tethering protein, head region
Uso1_p115_C PF04871 785 - 909 8.8e-29 Uso1 / p115 like vesicle tethering protein, C terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 269, 1003, 1450, 2095
AccII CGCG 2 cut(s) 246, 1494
AciI CCGC 5 cut(s) 1686, 1712, 2149, 2203, 2332
AclWI GGATC 3 cut(s) 552, 899, 1980
AcoI YGGCCR 2 cut(s) 1222, 2200
AcsI RAATTY 6 cut(s) 469, 609, 617, 1169, 2159, 2392
AcuI CTGAAG 5 cut(s) 140, 1847, 1950, 2441, 2493
AcvI CACGTG 1 cut(s) 596
AfaI GTAC 3 cut(s) 429, 817, 1164
AfiI CCNNNNNNNGG 4 cut(s) 1420, 1466, 1869, 2714
AflII CTTAAG 2 cut(s) 397, 1147
AflIII ACRYGT 3 cut(s) 593, 1299, 1364
AgeI ACCGGT 1 cut(s) 1978
AjiI CACGTC 3 cut(s) 1643, 2227, 2665
AjnI CCWGG 5 cut(s) 699, 907, 1595, 2639, 2707
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
Alw21I GWGCWC 3 cut(s) 179, 187, 2542
Alw26I GTCTC 4 cut(s) 41, 761, 1355, 2291
AlwI GGATC 3 cut(s) 552, 899, 1980
AlwNI CAGNNNCTG 2 cut(s) 902, 2237
AoxI GGCC 6 cut(s) 567, 1106, 1222, 1509, 2200, 2457
ApeKI GCWGC 7 cut(s) 1025, 1118, 1178, 1376, 2003, 2231, 2674
ApoI RAATTY 6 cut(s) 469, 609, 617, 1169, 2159, 2392
AseI ATTAAT 3 cut(s) 788, 846, 873
AsiGI ACCGGT 1 cut(s) 1978
Asp700I GAANNNNTTC 2 cut(s) 495, 2251
AspLEI GCGC 2 cut(s) 246, 1472
AspS9I GGNCC 5 cut(s) 262, 967, 1106, 1510, 2191
AsuHPI GGTGA 5 cut(s) 22, 1603, 1766, 1852, 2729
AsuNHI GCTAGC 1 cut(s) 1600
AvaII GGWCC 3 cut(s) 262, 967, 2191
BaeGI GKGCMC 2 cut(s) 274, 1006
BalI TGGCCA 1 cut(s) 1224
BanI GGYRCC 4 cut(s) 269, 1003, 1450, 2095
BanII GRGCYC 3 cut(s) 179, 1884, 2542
BauI CACGAG 2 cut(s) 510, 2594
BbrPI CACGTG 1 cut(s) 596
BbsI GAAGAC 2 cut(s) 34, 2499
Bbv12I GWGCWC 3 cut(s) 179, 187, 2542
BbvCI CCTCAGC 2 cut(s) 603, 2220
BbvI GCAGC 7 cut(s) 1037, 1105, 1190, 1363, 1990, 2243, 2661
BccI CCATC 9 cut(s) 217, 978, 1214, 1468, 1532, 1934, 2126, 2401, 2708
BcgI CGANNNNNNTGC 2 cut(s) 1078, 1112
BciT130I CCWGG 5 cut(s) 701, 909, 1597, 2641, 2709
BciVI GTATCC 1 cut(s) 1684
BclI TGATCA 1 cut(s) 1957
BcoDI GTCTC 4 cut(s) 41, 761, 1355, 2291
BfaI CTAG 6 cut(s) 1158, 1601, 1614, 1634, 2328, 2471
BfmI CTRYAG 3 cut(s) 1008, 1689, 1779
BfoI RGCGCY 1 cut(s) 1473
BfrI CTTAAG 2 cut(s) 397, 1147
BfuI GTATCC 1 cut(s) 1684
BglII AGATCT 2 cut(s) 1901, 2311
BlpI GCTNAGC 2 cut(s) 186, 1878
BmcAI AGTACT 1 cut(s) 817
Bme1390I CCNGG 5 cut(s) 701, 909, 1597, 2641, 2709
Bme18I GGWCC 3 cut(s) 262, 967, 2191
BmgBI CACGTC 3 cut(s) 1643, 2227, 2665
BmgT120I GGNCC 5 cut(s) 262, 967, 1106, 1510, 2191
BmiI GGNNCC 5 cut(s) 271, 1005, 1107, 1452, 2097
BmrFI CCNGG 5 cut(s) 701, 909, 1597, 2641, 2709
BmtI GCTAGC 1 cut(s) 1604
BpiI GAAGAC 2 cut(s) 34, 2499
BpmI CTGGAG 1 cut(s) 2730
Bpu10I CCTNAGC 3 cut(s) 603, 2220, 2541
Bpu1102I GCTNAGC 2 cut(s) 186, 1878
BpuEI CTTGAG 6 cut(s) 1304, 1357, 1379, 1466, 2330, 2471
BsaAI YACGTR 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 1971
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 265, 2197, 2602
BsaWI WCCGGW 1 cut(s) 1978
Bsc4I CCNNNNNNNGG 4 cut(s) 1420, 1466, 1869, 2714
Bse118I RCCGGY 1 cut(s) 1978
Bse1I ACTGG 6 cut(s) 997, 1380, 1414, 1674, 1677, 2242
Bse3DI GCAATG 6 cut(s) 55, 118, 210, 1624, 2180, 2212
Bse8I GATNNNNATC 1 cut(s) 1971
BseBI CCWGG 5 cut(s) 701, 909, 1597, 2641, 2709
BseDI CCNNGG 3 cut(s) 265, 2197, 2602
BseGI GGATG 4 cut(s) 1682, 2378, 2440, 2533
BseJI GATNNNNATC 1 cut(s) 1971
BseLI CCNNNNNNNGG 4 cut(s) 1420, 1466, 1869, 2714
BseMI GCAATG 6 cut(s) 55, 118, 210, 1624, 2180, 2212
BseNI ACTGG 6 cut(s) 997, 1380, 1414, 1674, 1677, 2242
BseRI GAGGAG 3 cut(s) 428, 1978, 2186
BseSI GKGCMC 2 cut(s) 274, 1006
BseX3I CGGCCG 1 cut(s) 2200
BseXI GCAGC 7 cut(s) 1037, 1105, 1190, 1363, 1990, 2243, 2661
BseYI CCCAGC 1 cut(s) 982
BsgI GTGCAG 1 cut(s) 1044
Bsh1236I CGCG 2 cut(s) 246, 1494
Bsh1285I CGRYCG 1 cut(s) 2203
BshFI GGCC 6 cut(s) 569, 1108, 1224, 1511, 2202, 2459
BshNI GGYRCC 4 cut(s) 269, 1003, 1450, 2095
BshTI ACCGGT 1 cut(s) 1978
BsiEI CGRYCG 1 cut(s) 2203
BsiHKAI GWGCWC 3 cut(s) 179, 187, 2542
BsiSI CCGG 1 cut(s) 1979
BslFI GGGAC 2 cut(s) 305, 1629
BslI CCNNNNNNNGG 4 cut(s) 1420, 1466, 1869, 2714
BsmAI GTCTC 4 cut(s) 41, 761, 1355, 2291
BsmBI CGTCTC 1 cut(s) 2291
BsmFI GGGAC 2 cut(s) 305, 1629
BsmI GAATGC 2 cut(s) 194, 745
BsnI GGCC 6 cut(s) 569, 1108, 1224, 1511, 2202, 2459
Bso31I GGTCTC 1 cut(s) 41
Bsp1286I GDGCHC 6 cut(s) 179, 187, 274, 1006, 1884, 2542
Bsp1407I TGTACA 1 cut(s) 1162
Bsp143I GATC 8 cut(s) 544, 904, 1354, 1901, 1957, 1972, 2311, 2587
Bsp1720I GCTNAGC 2 cut(s) 186, 1878
BspACI CCGC 5 cut(s) 1686, 1712, 2149, 2203, 2332
BspANI GGCC 6 cut(s) 569, 1108, 1224, 1511, 2202, 2459
BspFNI CGCG 2 cut(s) 246, 1494
BspHI TCATGA 1 cut(s) 1398
BspLI GGNNCC 5 cut(s) 271, 1005, 1107, 1452, 2097
BspOI GCTAGC 1 cut(s) 1604
BspPI GGATC 3 cut(s) 552, 899, 1980
BspQI GCTCTTC 2 cut(s) 234, 465
BspT107I GGYRCC 4 cut(s) 269, 1003, 1450, 2095
BspTI CTTAAG 2 cut(s) 397, 1147
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 6 cut(s) 55, 118, 210, 1624, 2180, 2212
BsrFI RCCGGY 1 cut(s) 1978
BsrGI TGTACA 1 cut(s) 1162
BsrI ACTGG 6 cut(s) 997, 1380, 1414, 1674, 1677, 2242
BssAI RCCGGY 1 cut(s) 1978
BssECI CCNNGG 3 cut(s) 265, 2197, 2602
BssMI GATC 8 cut(s) 544, 904, 1354, 1901, 1957, 1972, 2311, 2587
BssSI CACGAG 2 cut(s) 510, 2594
BssT1I CCWWGG 1 cut(s) 2602
Bst2BI CACGAG 2 cut(s) 510, 2594
Bst2UI CCWGG 5 cut(s) 701, 909, 1597, 2641, 2709
Bst4CI ACNGT 9 cut(s) 104, 686, 707, 717, 824, 1693, 1780, 2069, 2447
Bst6I CTCTTC 6 cut(s) 234, 447, 465, 1525, 2417, 2715
BstAFI CTTAAG 2 cut(s) 397, 1147
BstAPI GCANNNNNTGC 1 cut(s) 1874
BstAUI TGTACA 1 cut(s) 1162
BstBAI YACGTR 1 cut(s) 596
BstC8I GCNNGC 9 cut(s) 123, 192, 1087, 1316, 1602, 2100, 2212, 2401, 2457
BstEII GGTNACC 1 cut(s) 1591
BstENI CCTNNNNNAGG 1 cut(s) 1867
BstF5I GGATG 4 cut(s) 1682, 2378, 2440, 2533
BstFNI CGCG 2 cut(s) 246, 1494
BstH2I RGCGCY 1 cut(s) 1473
BstHHI GCGC 2 cut(s) 246, 1472
BstKTI GATC 8 cut(s) 547, 907, 1357, 1904, 1960, 1975, 2314, 2590
BstMAI GTCTC 4 cut(s) 41, 761, 1355, 2291
BstMBI GATC 8 cut(s) 544, 904, 1354, 1901, 1957, 1972, 2311, 2587
BstMCI CGRYCG 1 cut(s) 2203
BstMWI GCNNNNNNNGC 9 cut(s) 191, 200, 1010, 1486, 1874, 2211, 2216, 2357, 2537
BstNI CCWGG 5 cut(s) 701, 909, 1597, 2641, 2709
BstNSI RCATGY 4 cut(s) 314, 1303, 1318, 1368
BstPI GGTNACC 1 cut(s) 1591
BstSCI CCNGG 5 cut(s) 699, 907, 1595, 2639, 2707
BstSFI CTRYAG 3 cut(s) 1008, 1689, 1779
BstSLI GKGCMC 2 cut(s) 274, 1006
BstUI CGCG 2 cut(s) 246, 1494
BstV1I GCAGC 7 cut(s) 1037, 1105, 1190, 1363, 1990, 2243, 2661
BstV2I GAAGAC 2 cut(s) 34, 2499
BstX2I RGATCY 3 cut(s) 1901, 1972, 2311
BstXI CCANNNNNNTGG 2 cut(s) 1805, 2647
BstYI RGATCY 3 cut(s) 1901, 1972, 2311
BstZI CGGCCG 1 cut(s) 2200
BsuI GTATCC 1 cut(s) 1684
BsuRI GGCC 6 cut(s) 569, 1108, 1224, 1511, 2202, 2459
BtgZI GCGATG 1 cut(s) 1475
BtrI CACGTC 3 cut(s) 1643, 2227, 2665
BtsCI GGATG 4 cut(s) 1682, 2378, 2440, 2533
BtsI GCAGTG 1 cut(s) 2097
BtsIMutI CAGTG 6 cut(s) 354, 1004, 1387, 1421, 1698, 2097
Cac8I GCNNGC 9 cut(s) 123, 192, 1087, 1316, 1602, 2100, 2212, 2401, 2457
CaiI CAGNNNCTG 2 cut(s) 902, 2237
CciI TCATGA 1 cut(s) 1398
CfoI GCGC 2 cut(s) 246, 1472
Cfr10I RCCGGY 1 cut(s) 1978
Cfr13I GGNCC 5 cut(s) 262, 967, 1106, 1510, 2191
CseI GACGC 1 cut(s) 2308
Csp6I GTAC 3 cut(s) 428, 816, 1163
CspAI ACCGGT 1 cut(s) 1978
CviQI GTAC 3 cut(s) 428, 816, 1163
DpnI GATC 8 cut(s) 546, 906, 1356, 1903, 1959, 1974, 2313, 2589
DpnII GATC 8 cut(s) 544, 904, 1354, 1901, 1957, 1972, 2311, 2587
EaeI YGGCCR 2 cut(s) 1222, 2200
EagI CGGCCG 1 cut(s) 2200
Eam1104I CTCTTC 6 cut(s) 234, 447, 465, 1525, 2417, 2715
EarI CTCTTC 6 cut(s) 234, 447, 465, 1525, 2417, 2715
Ecl136II GAGCTC 2 cut(s) 177, 2540
EclXI CGGCCG 1 cut(s) 2200
Eco130I CCWWGG 1 cut(s) 2602
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 3 cut(s) 179, 1884, 2542
Eco31I GGTCTC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 2686
Eco47I GGWCC 3 cut(s) 262, 967, 2191
Eco52I CGGCCG 1 cut(s) 2200
Eco53kI GAGCTC 2 cut(s) 177, 2540
Eco57I CTGAAG 5 cut(s) 140, 1847, 1950, 2441, 2493
Eco72I CACGTG 1 cut(s) 596
Eco91I GGTNACC 1 cut(s) 1591
EcoICRI GAGCTC 2 cut(s) 177, 2540
EcoNI CCTNNNNNAGG 1 cut(s) 1867
EcoO109I RGGNCCY 1 cut(s) 2191
EcoO65I GGTNACC 1 cut(s) 1591
EcoRII CCWGG 5 cut(s) 699, 907, 1595, 2639, 2707
EcoRV GATATC 1 cut(s) 2686
EcoT14I CCWWGG 1 cut(s) 2602
EcoT22I ATGCAT 4 cut(s) 745, 1040, 1491, 1561
EcoT38I GRGCYC 3 cut(s) 179, 1884, 2542
ErhI CCWWGG 1 cut(s) 2602
Esp3I CGTCTC 1 cut(s) 2291
FalI AAGNNNNNCTT 2 cut(s) 1341, 1373
FaqI GGGAC 2 cut(s) 305, 1629
FbaI TGATCA 1 cut(s) 1957
FokI GGATG 4 cut(s) 1669, 2365, 2447, 2540
FriOI GRGCYC 3 cut(s) 179, 1884, 2542
FspBI CTAG 6 cut(s) 1158, 1601, 1614, 1634, 2328, 2471
GlaI GCGC 2 cut(s) 245, 1471
GsaI CCCAGC 1 cut(s) 986
GsuI CTGGAG 1 cut(s) 2730
HaeII RGCGCY 1 cut(s) 1473
HaeIII GGCC 6 cut(s) 569, 1108, 1224, 1511, 2202, 2459
HapII CCGG 1 cut(s) 1979
HgaI GACGC 1 cut(s) 2308
HhaI GCGC 2 cut(s) 246, 1472
Hin6I GCGC 2 cut(s) 244, 1470
HinP1I GCGC 2 cut(s) 244, 1470
HincII GTYRAC 1 cut(s) 1889
HindII GTYRAC 1 cut(s) 1889
HindIII AAGCTT 2 cut(s) 2212, 2630
HpaII CCGG 1 cut(s) 1979
HphI GGTGA 5 cut(s) 22, 1603, 1766, 1852, 2729
Hpy166II GTNNAC 6 cut(s) 1163, 1297, 1889, 2014, 2065, 2668
Hpy188III TCNNGA 9 cut(s) 369, 548, 1073, 1358, 1399, 1579, 2318, 2450, 2519
Hpy8I GTNNAC 6 cut(s) 1163, 1297, 1889, 2014, 2065, 2668
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 5 cut(s) 626, 665, 1396, 1795, 2557
HpyCH4III ACNGT 9 cut(s) 104, 686, 707, 717, 824, 1693, 1780, 2069, 2447
HpyCH4IV ACGT 5 cut(s) 84, 595, 1642, 2226, 2664
HpyF10VI GCNNNNNNNGC 9 cut(s) 191, 200, 1010, 1486, 1874, 2211, 2216, 2357, 2537
HpySE526I ACGT 5 cut(s) 84, 595, 1642, 2226, 2664
HspAI GCGC 2 cut(s) 244, 1470
Ksp22I TGATCA 1 cut(s) 1957
Kzo9I GATC 8 cut(s) 544, 904, 1354, 1901, 1957, 1972, 2311, 2587
LguI GCTCTTC 2 cut(s) 234, 465
LmnI GCTCC 2 cut(s) 151, 200
Lsp1109I GCAGC 7 cut(s) 1037, 1105, 1190, 1363, 1990, 2243, 2661
MaeI CTAG 6 cut(s) 1158, 1601, 1614, 1634, 2328, 2471
MaeII ACGT 5 cut(s) 84, 595, 1642, 2226, 2664
MaeIII GTNAC 6 cut(s) 17, 80, 483, 804, 1320, 1591
MalI GATC 8 cut(s) 546, 906, 1356, 1903, 1959, 1974, 2313, 2589
MboI GATC 8 cut(s) 544, 904, 1354, 1901, 1957, 1972, 2311, 2587
MfeI CAATTG 1 cut(s) 771
MflI RGATCY 3 cut(s) 1901, 1972, 2311
MhlI GDGCHC 6 cut(s) 179, 187, 274, 1006, 1884, 2542
MlsI TGGCCA 1 cut(s) 1224
MluNI TGGCCA 1 cut(s) 1224
MlyI GAGTC 4 cut(s) 292, 1264, 1803, 2434
MmeI TCCRAC 6 cut(s) 843, 1786, 2316, 2439, 2491, 2628
Mox20I TGGCCA 1 cut(s) 1224
Mph1103I ATGCAT 4 cut(s) 745, 1040, 1491, 1561
MroXI GAANNNNTTC 2 cut(s) 495, 2251
MscI TGGCCA 1 cut(s) 1224
MslI CAYNNNNRTG 1 cut(s) 1033
Msp20I TGGCCA 1 cut(s) 1224
MspA1I CMGCKG 2 cut(s) 190, 1181
MspCI CTTAAG 2 cut(s) 397, 1147
MspI CCGG 1 cut(s) 1979
MspR9I CCNGG 5 cut(s) 701, 909, 1597, 2641, 2709
MunI CAATTG 1 cut(s) 771
Mva1269I GAATGC 2 cut(s) 194, 745
MvaI CCWGG 5 cut(s) 701, 909, 1597, 2641, 2709
MvnI CGCG 2 cut(s) 246, 1494
MwoI GCNNNNNNNGC 9 cut(s) 191, 200, 1010, 1486, 1874, 2211, 2216, 2357, 2537
NdeII GATC 8 cut(s) 544, 904, 1354, 1901, 1957, 1972, 2311, 2587
NheI GCTAGC 1 cut(s) 1600
NlaIV GGNNCC 5 cut(s) 271, 1005, 1107, 1452, 2097
NmeAIII GCCGAG 1 cut(s) 2178
NmuCI GTSAC 1 cut(s) 1591
NsiI ATGCAT 4 cut(s) 745, 1040, 1491, 1561
NspI RCATGY 4 cut(s) 314, 1303, 1318, 1368
PaeI GCATGC 1 cut(s) 1318
PagI TCATGA 1 cut(s) 1398
PceI AGGCCT 1 cut(s) 569
PciI ACATGT 2 cut(s) 1299, 1364
PciSI GCTCTTC 2 cut(s) 234, 465
PctI GAATGC 2 cut(s) 194, 745
PdmI GAANNNNTTC 2 cut(s) 495, 2251
PfeI GAWTC 7 cut(s) 1069, 1140, 1249, 1637, 1787, 2369, 2411
PfoI TCCNGGA 2 cut(s) 699, 907
PinAI ACCGGT 1 cut(s) 1978
PleI GAGTC 4 cut(s) 292, 1264, 1803, 2433
PmaCI CACGTG 1 cut(s) 596
PmlI CACGTG 1 cut(s) 596
PpsI GAGTC 4 cut(s) 292, 1264, 1803, 2433
Ppu21I YACGTR 1 cut(s) 596
PpuMI RGGWCCY 1 cut(s) 2191
PscI ACATGT 2 cut(s) 1299, 1364
PshBI ATTAAT 3 cut(s) 788, 846, 873
Psp124BI GAGCTC 2 cut(s) 179, 2542
Psp5II RGGWCCY 1 cut(s) 2191
Psp6I CCWGG 5 cut(s) 699, 907, 1595, 2639, 2707
PspCI CACGTG 1 cut(s) 596
PspEI GGTNACC 1 cut(s) 1591
PspFI CCCAGC 1 cut(s) 982
PspGI CCWGG 5 cut(s) 699, 907, 1595, 2639, 2707
PspN4I GGNNCC 5 cut(s) 271, 1005, 1107, 1452, 2097
PspPI GGNCC 5 cut(s) 262, 967, 1106, 1510, 2191
PspPPI RGGWCCY 1 cut(s) 2191
PstNI CAGNNNCTG 2 cut(s) 902, 2237
PsuI RGATCY 3 cut(s) 1901, 1972, 2311
PvuII CAGCTG 2 cut(s) 190, 1181
RsaI GTAC 3 cut(s) 429, 817, 1164
RsaNI GTAC 3 cut(s) 428, 816, 1163
RseI CAYNNNNRTG 1 cut(s) 1033
SacI GAGCTC 2 cut(s) 179, 2542
SapI GCTCTTC 2 cut(s) 234, 465
Sau3AI GATC 8 cut(s) 544, 904, 1354, 1901, 1957, 1972, 2311, 2587
Sau96I GGNCC 5 cut(s) 262, 967, 1106, 1510, 2191
ScaI AGTACT 1 cut(s) 817
SchI GAGTC 4 cut(s) 292, 1264, 1803, 2434
ScrFI CCNGG 5 cut(s) 701, 909, 1597, 2641, 2709
SduI GDGCHC 6 cut(s) 179, 187, 274, 1006, 1884, 2542
SfcI CTRYAG 3 cut(s) 1008, 1689, 1779
SinI GGWCC 3 cut(s) 262, 967, 2191
SmiMI CAYNNNNRTG 1 cut(s) 1033
SmlI CTYRAG 8 cut(s) 397, 1147, 1283, 1336, 1358, 1445, 2345, 2450
SmoI CTYRAG 8 cut(s) 397, 1147, 1283, 1336, 1358, 1445, 2345, 2450
SphI GCATGC 1 cut(s) 1318
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 5 cut(s) 1686, 1712, 2149, 2203, 2332
SspMI CTAG 6 cut(s) 1158, 1601, 1614, 1634, 2328, 2471
SstI GAGCTC 2 cut(s) 179, 2542
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 5 cut(s) 699, 907, 1595, 2639, 2707
StyI CCWWGG 1 cut(s) 2602
TaaI ACNGT 9 cut(s) 104, 686, 707, 717, 824, 1693, 1780, 2069, 2447
TaiI ACGT 5 cut(s) 87, 598, 1645, 2229, 2667
TaqI TCGA 2 cut(s) 1353, 2625
TaqII GACCGA 1 cut(s) 2247
TatI WGTACW 2 cut(s) 815, 1162
TauI GCSGC 3 cut(s) 1715, 2152, 2205
TfiI GAWTC 7 cut(s) 1069, 1140, 1249, 1637, 1787, 2369, 2411
TscAI CASTG 6 cut(s) 361, 1004, 1387, 1421, 1698, 2097
TseFI GTSAC 1 cut(s) 1591
TseI GCWGC 7 cut(s) 1025, 1118, 1178, 1376, 2003, 2231, 2674
Tsp45I GTSAC 1 cut(s) 1591
TspDTI ATGAA 8 cut(s) 87, 365, 1415, 1541, 1613, 1671, 1851, 2279
TspGWI ACGGA 1 cut(s) 1007
TspRI CASTG 6 cut(s) 361, 1004, 1387, 1421, 1698, 2097
Vha464I CTTAAG 2 cut(s) 397, 1147
VpaK11BI GGWCC 3 cut(s) 262, 967, 2191
VspI ATTAAT 3 cut(s) 788, 846, 873
XagI CCTNNNNNAGG 1 cut(s) 1867
XapI RAATTY 6 cut(s) 469, 609, 617, 1169, 2159, 2392
XceI RCATGY 4 cut(s) 314, 1303, 1318, 1368
XmnI GAANNNNTTC 2 cut(s) 495, 2251
XspI CTAG 6 cut(s) 1158, 1601, 1614, 1634, 2328, 2471
ZrmI AGTACT 1 cut(s) 817
Zsp2I ATGCAT 4 cut(s) 745, 1040, 1491, 1561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.