Rmu_sc0000120.1_g000013

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000120.1
OG0000136
Physical Location & Seq
Forward (+)
51650 .. 52339
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000120.1_g000013.1.cds

Sequence Viewer

Length: 690 bp
atggataagagttggattaacatagggaacagatggtcaaagagggttattgatggttatgaagaatttctgaagtttgcatacactaataggaaggaaagtgaattgataacttgtccatgtagaaaatgttgcaaccgacccatttatttgcctaaagaaactgtccgaaaacatctcaaagataatggcttcttgagaaggtatacgaattggattaaccacggagagcctccaattgctactaaccatgccaactctgaaattgaaaatgaagttgatttaaatgtccaagatgatatgtttgaaatgctgcatggagctacgggcattccaaacatgggtgaaactgatgatcctccatcagatgatccccaagttgggccaaaccaaactactgctcattttttaaagctattggaaggtgcacaacttctactatatctgggttgtacacgctttactgccttatcattccttgttcgaatgatgcataataaagtgttgcatgggtggtcagataaatcattcacgagtttactcaagaacttggctcgtgctttcccggagggtgtgttacttcccaagtcctactatgaggctagaaagataacaaaagatttaggtttcacctatcaaacttgggatgcatgtaggaacaatgcatgttgttccgaaatgatgacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

229

Amino Acids

26.39

Weight (kDa)

7.03

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 206
AclWI GGATC 2 cut(s) 350, 365
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 92
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 3 cut(s) 341, 380, 381
AgsI TTSAA 2 cut(s) 269, 308
AluBI AGCT 2 cut(s) 323, 415
AluI AGCT 2 cut(s) 323, 415
Alw21I GWGCWC 1 cut(s) 430
Alw44I GTGCAC 1 cut(s) 426
AlwI GGATC 2 cut(s) 350, 365
AoxI GGCC 1 cut(s) 383
ApaLI GTGCAC 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 383
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 356, 622
AsuII TTCGAA 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 430
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
BauI CACGAG 2 cut(s) 532, 555
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 300
BccI CCATC 3 cut(s) 27, 47, 370
BcnI CCSGG 1 cut(s) 566
BfaI CTAG 1 cut(s) 603
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 2 cut(s) 480, 637
Bpu14I TTCGAA 1 cut(s) 484
BpuEI CTTGAG 2 cut(s) 217, 527
BpuMI CCSGG 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 380, 381
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 652
BseLI CCNNNNNNNGG 3 cut(s) 341, 380, 381
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 1 cut(s) 300
BshFI GGCC 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 3 cut(s) 341, 380, 381
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 1 cut(s) 385
Bsp119I TTCGAA 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 430
Bsp1407I TGTACA 1 cut(s) 452
Bsp143I GATC 2 cut(s) 355, 370
BspANI GGCC 1 cut(s) 385
BspPI GGATC 2 cut(s) 350, 365
BspT104I TTCGAA 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 452
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 2 cut(s) 355, 370
BssNAI GTATAC 1 cut(s) 207
BssSI CACGAG 2 cut(s) 532, 555
Bst1107I GTATAC 1 cut(s) 207
Bst2BI CACGAG 2 cut(s) 532, 555
Bst4CI ACNGT 1 cut(s) 166
BstAUI TGTACA 1 cut(s) 452
BstBI TTCGAA 1 cut(s) 484
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 652
BstKTI GATC 2 cut(s) 358, 373
BstMBI GATC 2 cut(s) 355, 370
BstNSI RCATGY 2 cut(s) 654, 669
BstSCI CCNGG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 300
BstZ17I GTATAC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 385
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 652
Cfr13I GGNCC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 453
CviAII CATG 7 cut(s) 120, 251, 317, 340, 509, 651, 666
CviJI RGCY 7 cut(s) 192, 232, 323, 385, 415, 554, 602
CviKI_1 RGCY 7 cut(s) 192, 232, 323, 385, 415, 554, 602
CviQI GTAC 1 cut(s) 453
DpnI GATC 2 cut(s) 357, 372
DpnII GATC 2 cut(s) 355, 370
DraI TTTAAA 2 cut(s) 285, 411
Eco57I CTGAAG 1 cut(s) 92
EcoT22I ATGCAT 3 cut(s) 495, 652, 667
FaeI CATG 7 cut(s) 123, 254, 320, 343, 512, 654, 669
FatI CATG 7 cut(s) 119, 250, 316, 339, 508, 650, 665
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 1 cut(s) 659
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 1 cut(s) 603
GluI GCNGC 1 cut(s) 314
HaeIII GGCC 1 cut(s) 385
HapII CCGG 1 cut(s) 566
Hin1II CATG 7 cut(s) 123, 254, 320, 343, 512, 654, 669
HpaII CCGG 1 cut(s) 566
HphI GGTGA 2 cut(s) 356, 622
Hpy166II GTNNAC 4 cut(s) 207, 428, 455, 539
Hpy188I TCNGA 6 cut(s) 72, 170, 262, 367, 520, 676
Hpy188III TCNNGA 3 cut(s) 196, 532, 544
Hpy8I GTNNAC 4 cut(s) 207, 428, 455, 539
HpyAV CCTTC 3 cut(s) 88, 195, 416
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 8 cut(s) 80, 135, 316, 428, 493, 508, 650, 665
Hsp92II CATG 7 cut(s) 123, 254, 320, 343, 512, 654, 669
Kzo9I GATC 2 cut(s) 355, 370
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 2 cut(s) 431, 579
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 480, 637
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 1 cut(s) 576
MalI GATC 2 cut(s) 357, 372
MboI GATC 2 cut(s) 355, 370
MboII GAAGA 1 cut(s) 74
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 5 cut(s) 65, 104, 211, 237, 264
MnlI CCTC 5 cut(s) 36, 243, 369, 562, 592
Mph1103I ATGCAT 3 cut(s) 495, 652, 667
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 4 cut(s) 18, 219, 284, 410
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 566
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 330
NciI CCSGG 1 cut(s) 566
NdeII GATC 2 cut(s) 355, 370
NlaIII CATG 7 cut(s) 123, 254, 320, 343, 512, 654, 669
NsiI ATGCAT 3 cut(s) 495, 652, 667
NspI RCATGY 2 cut(s) 654, 669
NspV TTCGAA 1 cut(s) 484
PctI GAATGC 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 383
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SaqAI TTAA 4 cut(s) 18, 219, 284, 410
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 2 cut(s) 355, 370
Sau96I GGNCC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 1 cut(s) 430
SetI ASST 6 cut(s) 206, 325, 417, 427, 628, 635
SfaNI GCATC 2 cut(s) 480, 637
SfuI TTCGAA 1 cut(s) 484
SmiI ATTTAAAT 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 196, 542
SmoI CTYRAG 2 cut(s) 196, 542
Sse9I AATT 5 cut(s) 65, 104, 211, 237, 264
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 564
SwaI ATTTAAAT 1 cut(s) 285
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 484
TasI AATT 5 cut(s) 65, 104, 211, 237, 264
TatI WGTACW 1 cut(s) 452
Tru1I TTAA 4 cut(s) 18, 219, 284, 410
Tru9I TTAA 4 cut(s) 18, 219, 284, 410
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 75, 288
TspGWI ACGGA 1 cut(s) 240
VneI GTGCAC 1 cut(s) 426
XapI RAATTY 1 cut(s) 65
XceI RCATGY 2 cut(s) 654, 669
XmiI GTMKAC 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 603
Zsp2I ATGCAT 3 cut(s) 495, 652, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.