Rorug05G0543400

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000136
Physical Location & Seq
Forward (+)
73143018 .. 73146453
3436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0543400.1

Sequence Viewer

Length: 1419 bp
ATGGAGGAAGTCAGCGAATTGCTGAGGCAGCATGAACTTACTGGCAGGGAATTACTGAGTTTGTTCATAATCTGGTACAGAAATATTTCATACTGCTTGTCCCTAAACCCGAAAATGAAGAGGATTCTGAAGTCAACTAAGTCAAGTGCCTTGGGTTCAAGTCAAATAGCTGGTGTTAAGAACCGGAACAAATCATCTTCATCGTCTCAGGTCTTGTCAATGTTGAAGAAGGAGGAGGGCTTCGATCTCCCTGAAGATATTGTAGTGAAAATTCTGTGCCGGTTGCCGGTCAAAACACTGATCCGGTTCACTTGTGTGTCAAAACGGTGGCGTTTTATCATCATTTCCGATCCTCAATTCGCCAAATCCCACCTCCAACTAGCATTACAGCAGGGAACCCTCAGCCAAAGAATCCACCCCATATTTGTTTGTGAGTCCCCTCAATTTCAATCATGGGAACATAGTTTCAAGGGTTCAGTTATACGCCTCAGCTTCCCATCAGTGGAATGTGAGCAGCTAGTAAGGACCACGTGCAATGGCTTGGTTCTTCTAGGTGACTCCTATATAACTGGTTTGGTAGCCTTGTCTATCTGTAATCCATCAACAGGATTTGTCCGCAAAATACCTAGTCCAAGGATGCCTGACTACATGGACGAAAACGGAGAAAGACAGCGTCTAGACTTTGTAATTTCTGGTTTTGGTTATGTCTCGTCCACAGATGACTACAAGCTTGTTTTTGTAATACCGGGCGATAGCACACATTTTCATGTCTATATCTTTTCACTGAGGGCCAACTCTTGGAAAGTTATTGAAGCTCCTCACTTGTCATCACCAGACTGCGGTCACGAGGTGGGGACTCTTTTAAATGAAGCAATCCATTGGATTAACTACCGCAGTGGAGTTTCAGACCCAGCGAGTATGTATGCTTTTGATTTGGCAGAGGAGGAGTTCCGTGAAATGACATTGCCTGTTTGGTTCCCAAAAGATGAGACATACATAAGGGTTCTTTCATCAGGAGGATGCCTTTGTATGTGGTTAAAGGCAGATGATGGGCTTAGTTGCGAAATTTGGGGAATGACAGAGTATGCGGTGCCTGAATCTTGGGTTAAACTCTTCGGATTTAGAGAAGACGATTTACCAGATGTGTTCACTTCATTAAATTGTGGTTGGGATCTGTGTTTTATTACAGAAGGCGGTACAGTTGTGATTGAACTATTTGAAAGTAATGAGTTGGTCTGGATTGAATGCCGTAAAGAAGAGAAGCCAGTCTGCAGCGGTCGATATTTGCCTGAAGAGTTGCTCGGGTTTAGGCCTAGTTTGCCAAGCGGTCGATATTTGCCTGAAGTGTTGCTCGGGTTGAAGTATAGTAGTTTTTACATCACTTTATATGGTGAAACTTTAGTTTCGGTACCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

472

Amino Acids

53.65

Weight (kDa)

5.47

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 82 - 117 4.2e-10 F-box domain
F-box-like PF12937 82 - 117 1.6e-07 F-box-like
FBA_3 PF08268 140 - 335 1.1e-09 F-box associated beta propeller domain
FBA_1 PF07734 167 - 403 1.3e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1408
AccB1I GGYRCC 2 cut(s) 1090, 1408
AccB7I CCANNNNNTGG 1 cut(s) 798
AciI CCGC 7 cut(s) 616, 840, 892, 1088, 1194, 1275, 1326
AclWI GGATC 3 cut(s) 295, 344, 1179
AcsI RAATTY 2 cut(s) 270, 1065
AcuI CTGAAG 4 cut(s) 149, 273, 1311, 1362
AcvI CACGTG 1 cut(s) 531
AdeI CACNNNGTG 1 cut(s) 850
AfaI GTAC 3 cut(s) 77, 1198, 1410
AfiI CCNNNNNNNGG 5 cut(s) 286, 502, 605, 798, 839
AgsI TTSAA 9 cut(s) 159, 226, 449, 469, 812, 1211, 1220, 1244, 1360
AleI CACNNNNGTG 1 cut(s) 314
AluBI AGCT 5 cut(s) 170, 492, 517, 730, 815
AluI AGCT 5 cut(s) 170, 492, 517, 730, 815
Alw26I GTCTC 3 cut(s) 210, 712, 983
AlwI GGATC 3 cut(s) 295, 344, 1179
Ama87I CYCGRG 2 cut(s) 1301, 1352
AoxI GGCC 2 cut(s) 789, 1310
ApeKI GCWGC 3 cut(s) 28, 514, 1272
ApoI RAATTY 2 cut(s) 270, 1065
Asp700I GAANNNNTTC 1 cut(s) 85
Asp718I GGTACC 1 cut(s) 1408
AspS9I GGNCC 2 cut(s) 525, 789
AsuC2I CCSGG 1 cut(s) 747
AsuHPI GGTGA 3 cut(s) 566, 822, 1403
AvaI CYCGRG 2 cut(s) 1301, 1352
AvaII GGWCC 1 cut(s) 525
BaeI ACNNNNGTAYC 2 cut(s) 1188, 1221
BanI GGYRCC 2 cut(s) 1090, 1408
BarI GAAGNNNNNNTAC 2 cut(s) 1119, 1151
BauI CACGAG 1 cut(s) 845
BbrPI CACGTG 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 1134
BbvCI CCTCAGC 3 cut(s) 23, 401, 488
BbvI GCAGC 3 cut(s) 40, 526, 1284
BccI CCATC 3 cut(s) 505, 607, 1043
BceAI ACGGC 1 cut(s) 1233
BcnI CCSGG 1 cut(s) 747
BcoDI GTCTC 3 cut(s) 210, 712, 983
BfaI CTAG 6 cut(s) 380, 518, 551, 627, 677, 1314
BfmI CTRYAG 1 cut(s) 1270
BisI GCNGC 3 cut(s) 29, 515, 1273
BlsI GCNGC 3 cut(s) 30, 516, 1274
Bme1390I CCNGG 1 cut(s) 747
Bme18I GGWCC 1 cut(s) 525
BmeT110I CYCGRG 2 cut(s) 1301, 1352
BmgT120I GGNCC 2 cut(s) 525, 789
BmiI GGNNCC 4 cut(s) 397, 977, 1092, 1410
BmrFI CCNGG 1 cut(s) 747
BmsI GCATC 2 cut(s) 627, 1010
BoxI GACNNNNGTC 1 cut(s) 840
BpiI GAAGAC 1 cut(s) 1134
Bpu10I CCTNAGC 3 cut(s) 23, 401, 488
BpuMI CCSGG 1 cut(s) 747
BsaAI YACGTR 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 150, 632
BsaWI WCCGGW 2 cut(s) 183, 303
Bsc4I CCNNNNNNNGG 5 cut(s) 286, 502, 605, 798, 839
Bse118I RCCGGY 2 cut(s) 279, 286
Bse1I ACTGG 3 cut(s) 46, 574, 1265
Bse3DI GCAATG 2 cut(s) 541, 962
BseDI CCNNGG 2 cut(s) 150, 632
BseGI GGATG 2 cut(s) 642, 1025
BseLI CCNNNNNNNGG 5 cut(s) 286, 502, 605, 798, 839
BseMI GCAATG 2 cut(s) 541, 962
BseMII CTCAG 6 cut(s) 14, 47, 221, 415, 502, 776
BseNI ACTGG 3 cut(s) 46, 574, 1265
BseRI GAGGAG 4 cut(s) 248, 807, 956, 959
BseXI GCAGC 3 cut(s) 40, 526, 1284
BseYI CCCAGC 1 cut(s) 910
Bsh1285I CGRYCG 2 cut(s) 1279, 1330
BshFI GGCC 2 cut(s) 791, 1312
BshNI GGYRCC 2 cut(s) 1090, 1408
BsiEI CGRYCG 2 cut(s) 1279, 1330
BsiHKCI CYCGRG 2 cut(s) 1301, 1352
BsiSI CCGG 5 cut(s) 184, 280, 287, 304, 746
BslFI GGGAC 3 cut(s) 85, 421, 868
BslI CCNNNNNNNGG 5 cut(s) 286, 502, 605, 798, 839
BsmAI GTCTC 3 cut(s) 210, 712, 983
BsmBI CGTCTC 1 cut(s) 210
BsmFI GGGAC 3 cut(s) 85, 421, 868
BsmI GAATGC 1 cut(s) 1250
BsnI GGCC 2 cut(s) 791, 1312
BsoBI CYCGRG 2 cut(s) 1301, 1352
Bsp143I GATC 4 cut(s) 244, 300, 349, 1171
BspACI CCGC 7 cut(s) 616, 840, 892, 1088, 1194, 1275, 1326
BspANI GGCC 2 cut(s) 791, 1312
BspCNI CTCAG 6 cut(s) 15, 48, 220, 414, 501, 777
BspLI GGNNCC 4 cut(s) 397, 977, 1092, 1410
BspMAI CTGCAG 1 cut(s) 1274
BspPI GGATC 3 cut(s) 295, 344, 1179
BspT107I GGYRCC 2 cut(s) 1090, 1408
BsrDI GCAATG 2 cut(s) 541, 962
BsrFI RCCGGY 2 cut(s) 279, 286
BsrI ACTGG 3 cut(s) 46, 574, 1265
BssAI RCCGGY 2 cut(s) 279, 286
BssECI CCNNGG 2 cut(s) 150, 632
BssMI GATC 4 cut(s) 244, 300, 349, 1171
BssSI CACGAG 1 cut(s) 845
BssT1I CCWWGG 2 cut(s) 150, 632
Bst2BI CACGAG 1 cut(s) 845
Bst4CI ACNGT 2 cut(s) 327, 1201
Bst6I CTCTTC 4 cut(s) 113, 1118, 1251, 1287
BstBAI YACGTR 1 cut(s) 531
BstDEI CTNAG 8 cut(s) 23, 56, 138, 207, 401, 488, 785, 1055
BstF5I GGATG 2 cut(s) 642, 1025
BstKTI GATC 4 cut(s) 247, 303, 352, 1174
BstMAI GTCTC 3 cut(s) 210, 712, 983
BstMBI GATC 4 cut(s) 244, 300, 349, 1171
BstMCI CGRYCG 2 cut(s) 1279, 1330
BstMWI GCNNNNNNNGC 2 cut(s) 28, 1318
BstPAI GACNNNNGTC 1 cut(s) 840
BstSCI CCNGG 1 cut(s) 745
BstSFI CTRYAG 1 cut(s) 1270
BstV1I GCAGC 3 cut(s) 40, 526, 1284
BstV2I GAAGAC 1 cut(s) 1134
BstX2I RGATCY 1 cut(s) 1171
BstYI RGATCY 1 cut(s) 1171
BsuRI GGCC 2 cut(s) 791, 1312
BtsCI GGATG 2 cut(s) 642, 1025
BtsI GCAGTG 1 cut(s) 901
BtsIMutI CAGTG 4 cut(s) 296, 507, 782, 901
Cfr10I RCCGGY 2 cut(s) 279, 286
Cfr13I GGNCC 2 cut(s) 525, 789
CseI GACGC 1 cut(s) 662
Csp6I GTAC 3 cut(s) 76, 1197, 1409
CviAII CATG 4 cut(s) 32, 453, 649, 767
CviQI GTAC 3 cut(s) 76, 1197, 1409
DdeI CTNAG 8 cut(s) 23, 56, 138, 207, 401, 488, 785, 1055
DpnI GATC 4 cut(s) 246, 302, 351, 1173
DpnII GATC 4 cut(s) 244, 300, 349, 1171
DraI TTTAAA 1 cut(s) 864
DraIII CACNNNGTG 1 cut(s) 850
Eam1104I CTCTTC 4 cut(s) 113, 1118, 1251, 1287
EarI CTCTTC 4 cut(s) 113, 1118, 1251, 1287
Eco130I CCWWGG 2 cut(s) 150, 632
Eco147I AGGCCT 1 cut(s) 1312
Eco47I GGWCC 1 cut(s) 525
Eco57I CTGAAG 4 cut(s) 149, 273, 1311, 1362
Eco72I CACGTG 1 cut(s) 531
Eco88I CYCGRG 2 cut(s) 1301, 1352
EcoT14I CCWWGG 2 cut(s) 150, 632
ErhI CCWWGG 2 cut(s) 150, 632
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 4 cut(s) 35, 456, 652, 770
FaqI GGGAC 3 cut(s) 85, 421, 868
FatI CATG 4 cut(s) 31, 452, 648, 766
Fnu4HI GCNGC 3 cut(s) 29, 515, 1273
FokI GGATG 2 cut(s) 649, 1032
Fsp4HI GCNGC 3 cut(s) 29, 515, 1273
FspBI CTAG 6 cut(s) 380, 518, 551, 627, 677, 1314
GluI GCNGC 3 cut(s) 29, 515, 1273
GsaI CCCAGC 1 cut(s) 914
HaeIII GGCC 2 cut(s) 791, 1312
HapII CCGG 5 cut(s) 184, 280, 287, 304, 746
HgaI GACGC 1 cut(s) 662
Hin1II CATG 4 cut(s) 35, 456, 652, 770
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 6 cut(s) 124, 411, 434, 557, 856, 1097
HpaII CCGG 5 cut(s) 184, 280, 287, 304, 746
HphI GGTGA 3 cut(s) 566, 822, 1403
Hpy166II GTNNAC 4 cut(s) 135, 309, 714, 1149
Hpy188I TCNGA 4 cut(s) 129, 349, 907, 1118
Hpy188III TCNNGA 4 cut(s) 677, 845, 1014, 1237
Hpy8I GTNNAC 4 cut(s) 135, 309, 714, 1149
HpyAV CCTTC 2 cut(s) 223, 1184
HpyCH4III ACNGT 2 cut(s) 327, 1201
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 2 cut(s) 534, 1272
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 1318
HpyF3I CTNAG 8 cut(s) 23, 56, 138, 207, 401, 488, 785, 1055
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 4 cut(s) 35, 456, 652, 770
KpnI GGTACC 1 cut(s) 1412
Kzo9I GATC 4 cut(s) 244, 300, 349, 1171
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 3 cut(s) 40, 526, 1284
LweI GCATC 2 cut(s) 627, 1010
MaeI CTAG 6 cut(s) 380, 518, 551, 627, 677, 1314
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 2 cut(s) 554, 842
MalI GATC 4 cut(s) 246, 302, 351, 1173
MboI GATC 4 cut(s) 244, 300, 349, 1171
MboII GAAGA 9 cut(s) 130, 189, 238, 266, 539, 1105, 1139, 1268, 1304
MflI RGATCY 1 cut(s) 1171
MluCI AATT 8 cut(s) 17, 50, 270, 356, 443, 687, 1065, 1159
MlyI GAGTC 3 cut(s) 443, 551, 850
MmeI TCCRAC 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 6 cut(s) 177, 863, 885, 1037, 1107, 1157
MslI CAYNNNNRTG 2 cut(s) 314, 765
MspA1I CMGCKG 1 cut(s) 1275
MspI CCGG 5 cut(s) 184, 280, 287, 304, 746
MspR9I CCNGG 1 cut(s) 747
Mva1269I GAATGC 1 cut(s) 1250
MwoI GCNNNNNNNGC 2 cut(s) 28, 1318
NciI CCSGG 1 cut(s) 747
NdeII GATC 4 cut(s) 244, 300, 349, 1171
NlaIII CATG 4 cut(s) 35, 456, 652, 770
NlaIV GGNNCC 4 cut(s) 397, 977, 1092, 1410
NmuCI GTSAC 2 cut(s) 554, 842
OliI CACNNNNGTG 1 cut(s) 314
PceI AGGCCT 1 cut(s) 1312
PctI GAATGC 1 cut(s) 1250
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 3 cut(s) 124, 411, 1097
PflFI GACNNNGTC 1 cut(s) 672
PflMI CCANNNNNTGG 1 cut(s) 798
PkrI GCNGC 3 cut(s) 30, 516, 1274
PleI GAGTC 3 cut(s) 442, 551, 850
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
PpsI GAGTC 3 cut(s) 442, 551, 850
Ppu21I YACGTR 1 cut(s) 531
PshAI GACNNNNGTC 1 cut(s) 840
PspCI CACGTG 1 cut(s) 531
PspFI CCCAGC 1 cut(s) 910
PspN4I GGNNCC 4 cut(s) 397, 977, 1092, 1410
PspPI GGNCC 2 cut(s) 525, 789
PstI CTGCAG 1 cut(s) 1274
PsuI RGATCY 1 cut(s) 1171
PsyI GACNNNGTC 1 cut(s) 672
RsaI GTAC 3 cut(s) 77, 1198, 1410
RsaNI GTAC 3 cut(s) 76, 1197, 1409
RseI CAYNNNNRTG 2 cut(s) 314, 765
SaqAI TTAA 6 cut(s) 177, 863, 885, 1037, 1107, 1157
SatI GCNGC 3 cut(s) 29, 515, 1273
Sau3AI GATC 4 cut(s) 244, 300, 349, 1171
Sau96I GGNCC 2 cut(s) 525, 789
SchI GAGTC 3 cut(s) 443, 551, 850
ScrFI CCNGG 1 cut(s) 747
SfaNI GCATC 2 cut(s) 627, 1010
SfcI CTRYAG 1 cut(s) 1270
SinI GGWCC 1 cut(s) 525
SmiMI CAYNNNNRTG 2 cut(s) 314, 765
Sse9I AATT 8 cut(s) 17, 50, 270, 356, 443, 687, 1065, 1159
SseBI AGGCCT 1 cut(s) 1312
SsiI CCGC 7 cut(s) 616, 840, 892, 1088, 1194, 1275, 1326
SspI AATATT 1 cut(s) 85
SspMI CTAG 6 cut(s) 380, 518, 551, 627, 677, 1314
StuI AGGCCT 1 cut(s) 1312
StyD4I CCNGG 1 cut(s) 745
StyI CCWWGG 2 cut(s) 150, 632
TaaI ACNGT 2 cut(s) 327, 1201
TaiI ACGT 1 cut(s) 533
TaqI TCGA 3 cut(s) 243, 1279, 1330
TasI AATT 8 cut(s) 17, 50, 270, 356, 443, 687, 1065, 1159
TfiI GAWTC 3 cut(s) 124, 411, 1097
Tru1I TTAA 6 cut(s) 177, 863, 885, 1037, 1107, 1157
Tru9I TTAA 6 cut(s) 177, 863, 885, 1037, 1107, 1157
TscAI CASTG 4 cut(s) 303, 507, 789, 901
TseFI GTSAC 2 cut(s) 554, 842
TseI GCWGC 3 cut(s) 28, 514, 1272
Tsp45I GTSAC 2 cut(s) 554, 842
TspDTI ATGAA 9 cut(s) 48, 55, 78, 131, 189, 755, 882, 999, 1143
TspGWI ACGGA 2 cut(s) 675, 941
TspRI CASTG 4 cut(s) 303, 507, 789, 901
Tth111I GACNNNGTC 1 cut(s) 672
Van91I CCANNNNNTGG 1 cut(s) 798
VpaK11BI GGWCC 1 cut(s) 525
XapI RAATTY 2 cut(s) 270, 1065
XbaI TCTAGA 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 85
XspI CTAG 6 cut(s) 380, 518, 551, 627, 677, 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.