Prupe.2G006600_v2.0.a1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000136
Physical Location & Seq
Forward (+)
656726 .. 658152
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G006600.1

Sequence Viewer

Length: 993 bp
ATGGCCCCCAAGAGACTAAGAGAACAATCAATGGAGGAATTGATTCCCGCATCTCCTGTGAGAGCTAAAAAGAGTAGGTCACAAGCACGATCATCTCAACTACATGGATCAATTTCGAGTCAGCCTCAACTTGTTGCATCTAGGCGGCCTCAACCTACCACATCGAATCAATCTCAACGACAAGCACCATCTATGTCTGTTCAATCTCAACAACAAGCATCAACTGTGAGACTGACACAGTCTCAAGAGACACAACAATGTCACCCCAATTTGTCTACTCCTAGTCATGAGGACGAGCCTTTGATAACGCCATCAGATGAAACAGGTGAAATTGAGCCTACCATGAACGGTCGGGGTGCTGCTTGTTCTATTGCTGAATGGGGGACTGGAACAAAATTGCACATTGATTTTGATACTAAATGGAAATGGAAGCCAATAAAAGAAAATGCACAAAAATTTAGTACACAACTGGGAGTTATAGCACGAAATGCCCGAAAGGTCCCTTTGACAAAAGTTTCATGGAGTGGTATGCCTGATCATATATTAGATGACATTTGGAAAGATGTGCAGGATAACACGGATGTCCCTGACGCATATAGACCCCATTGCTTAAAGATTGTTGGTAACAGATGGAGAGATTGGAAATGTCGGCTTAAGAAAGAATGGTATGACAAATATGAGACCAATGAAGAGCGTTTAGCCATCACTCCTCCTCAAGTCCCTACAGACCAATGGAAGATACTTGTAAAGTATTGGGGTCTGCCTGATGTTAAGGAATGTTCTGAAGCAAATAAGGCTAATCGTGCACTAGGAAGTGCCCCTCATAGGACCGGTCGTACTTCTTTTGCTCAAGTGAAAAATCAGATGGAAGAGAAAGGAGAGAAAACAGATCGGTTGAGCTTGTTTATGCAGACGCGAAAAAAGAAAAAAAAGAATGACGATGAGGAAGTTTTTGACTATGAGAGTGCAAATATTATTGTAAGTATGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

331

Amino Acids

37.73

Weight (kDa)

9.22

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 275
AccII CGCG 1 cut(s) 916
AciI CCGC 2 cut(s) 48, 145
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 804
AfaI GTAC 2 cut(s) 463, 838
AfiI CCNNNNNNNGG 1 cut(s) 825
AflII CTTAAG 1 cut(s) 653
AgeI ACCGGT 1 cut(s) 830
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 2 cut(s) 65, 900
AluI AGCT 2 cut(s) 65, 900
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 5 cut(s) 7, 223, 242, 246, 674
Alw44I GTGCAC 1 cut(s) 804
AlwI GGATC 1 cut(s) 115
AoxI GGCC 2 cut(s) 3, 146
ApaLI GTGCAC 1 cut(s) 804
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 1 cut(s) 455
AsiGI ACCGGT 1 cut(s) 830
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 3 cut(s) 4, 499, 828
AsuHPI GGTGA 2 cut(s) 254, 338
AvaII GGWCC 2 cut(s) 499, 828
BaeGI GKGCMC 2 cut(s) 808, 820
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 1 cut(s) 346
BccI CCATC 5 cut(s) 196, 319, 624, 710, 859
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 5 cut(s) 7, 223, 242, 246, 674
BfaI CTAG 3 cut(s) 141, 282, 809
BfmI CTRYAG 1 cut(s) 723
BfrI CTTAAG 1 cut(s) 653
BisI GCNGC 2 cut(s) 146, 360
BlsI GCNGC 2 cut(s) 147, 361
Bme18I GGWCC 2 cut(s) 499, 828
BmgT120I GGNCC 3 cut(s) 4, 499, 828
BmiI GGNNCC 2 cut(s) 6, 501
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 3 cut(s) 59, 146, 227
BmuI ACTGGG 1 cut(s) 479
BplI GAGNNNNNCTC 2 cut(s) 109, 141
BpuEI CTTGAG 3 cut(s) 228, 699, 834
BsaI GGTCTC 1 cut(s) 674
BsaWI WCCGGW 1 cut(s) 830
Bsc4I CCNNNNNNNGG 1 cut(s) 825
Bse118I RCCGGY 1 cut(s) 830
Bse1I ACTGG 2 cut(s) 391, 474
Bse3DI GCAATG 1 cut(s) 604
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 1 cut(s) 825
BseMI GCAATG 1 cut(s) 604
BseNI ACTGG 2 cut(s) 391, 474
BseRI GAGGAG 2 cut(s) 699, 702
BseSI GKGCMC 2 cut(s) 808, 820
BseXI GCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 916
Bsh1285I CGRYCG 2 cut(s) 352, 835
BshFI GGCC 2 cut(s) 5, 148
BshTI ACCGGT 1 cut(s) 830
BsiEI CGRYCG 2 cut(s) 352, 835
BsiHKAI GWGCWC 1 cut(s) 808
BsiSI CCGG 1 cut(s) 831
BslFI GGGAC 4 cut(s) 397, 485, 569, 704
BslI CCNNNNNNNGG 1 cut(s) 825
BsmAI GTCTC 5 cut(s) 7, 223, 242, 246, 674
BsmFI GGGAC 4 cut(s) 397, 485, 569, 704
BsnI GGCC 2 cut(s) 5, 148
Bso31I GGTCTC 1 cut(s) 674
Bsp1286I GDGCHC 2 cut(s) 808, 820
Bsp143I GATC 4 cut(s) 89, 107, 535, 889
BspACI CCGC 2 cut(s) 48, 145
BspANI GGCC 2 cut(s) 5, 148
BspFNI CGCG 1 cut(s) 916
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 6, 501
BspPI GGATC 1 cut(s) 115
BspQI GCTCTTC 1 cut(s) 684
BspTI CTTAAG 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 674
BsrDI GCAATG 1 cut(s) 604
BsrFI RCCGGY 1 cut(s) 830
BsrI ACTGG 2 cut(s) 391, 474
BssAI RCCGGY 1 cut(s) 830
BssMI GATC 4 cut(s) 89, 107, 535, 889
Bst4CI ACNGT 3 cut(s) 226, 240, 350
Bst6I CTCTTC 2 cut(s) 684, 864
BstAFI CTTAAG 1 cut(s) 653
BstAPI GCANNNNNTGC 1 cut(s) 488
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 586
BstFNI CGCG 1 cut(s) 916
BstKTI GATC 4 cut(s) 92, 110, 538, 892
BstMAI GTCTC 5 cut(s) 7, 223, 242, 246, 674
BstMBI GATC 4 cut(s) 89, 107, 535, 889
BstMCI CGRYCG 2 cut(s) 352, 835
BstMWI GCNNNNNNNGC 3 cut(s) 488, 794, 803
BstSFI CTRYAG 1 cut(s) 723
BstSLI GKGCMC 2 cut(s) 808, 820
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 1 cut(s) 346
BsuRI GGCC 2 cut(s) 5, 148
BtsCI GGATG 1 cut(s) 586
CciI TCATGA 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 830
Cfr13I GGNCC 3 cut(s) 4, 499, 828
CseI GACGC 2 cut(s) 599, 922
Csp6I GTAC 2 cut(s) 462, 837
CspAI ACCGGT 1 cut(s) 830
CviAII CATG 4 cut(s) 104, 287, 343, 519
CviQI GTAC 2 cut(s) 462, 837
DdeI CTNAG 1 cut(s) 17
DpnI GATC 4 cut(s) 91, 109, 537, 891
DpnII GATC 4 cut(s) 89, 107, 535, 889
Eam1104I CTCTTC 2 cut(s) 684, 864
EarI CTCTTC 2 cut(s) 684, 864
Eco31I GGTCTC 1 cut(s) 674
Eco47I GGWCC 2 cut(s) 499, 828
Eco57I CTGAAG 1 cut(s) 804
EcoO109I RGGNCCY 1 cut(s) 499
FaeI CATG 4 cut(s) 107, 290, 346, 522
FaqI GGGAC 4 cut(s) 397, 485, 569, 704
FatI CATG 4 cut(s) 103, 286, 342, 518
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 146, 360
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 2 cut(s) 146, 360
FspBI CTAG 3 cut(s) 141, 282, 809
GluI GCNGC 2 cut(s) 146, 360
HaeIII GGCC 2 cut(s) 5, 148
HapII CCGG 1 cut(s) 831
HgaI GACGC 2 cut(s) 599, 922
Hin1II CATG 4 cut(s) 107, 290, 346, 522
HinfI GANTC 3 cut(s) 43, 118, 166
HpaII CCGG 1 cut(s) 831
HphI GGTGA 2 cut(s) 254, 338
Hpy166II GTNNAC 3 cut(s) 276, 464, 806
Hpy188I TCNGA 3 cut(s) 316, 784, 864
Hpy188III TCNNGA 2 cut(s) 245, 287
Hpy8I GTNNAC 3 cut(s) 276, 464, 806
HpyCH4III ACNGT 3 cut(s) 226, 240, 350
HpyCH4V TGCA 7 cut(s) 137, 400, 449, 568, 806, 910, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 794, 803
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 4 cut(s) 107, 290, 346, 522
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 4 cut(s) 89, 107, 535, 889
LguI GCTCTTC 1 cut(s) 684
LpnPI CCDG 9 cut(s) 69, 309, 372, 455, 546, 554, 600, 777, 844
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 3 cut(s) 59, 146, 227
MaeI CTAG 3 cut(s) 141, 282, 809
MaeIII GTNAC 3 cut(s) 78, 260, 623
MalI GATC 4 cut(s) 91, 109, 537, 891
MboI GATC 4 cut(s) 89, 107, 535, 889
MboII GAAGA 3 cut(s) 701, 748, 881
MhlI GDGCHC 2 cut(s) 808, 820
MluCI AATT 6 cut(s) 38, 111, 268, 330, 395, 455
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 8 cut(s) 28, 135, 159, 283, 720, 723, 831, 937
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 3 cut(s) 611, 654, 771
MslI CAYNNNNRTG 1 cut(s) 256
MspCI CTTAAG 1 cut(s) 653
MspI CCGG 1 cut(s) 831
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 3 cut(s) 488, 794, 803
NdeII GATC 4 cut(s) 89, 107, 535, 889
NlaIII CATG 4 cut(s) 107, 290, 346, 522
NlaIV GGNNCC 2 cut(s) 6, 501
NmuCI GTSAC 2 cut(s) 78, 260
PagI TCATGA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 43, 166
PflFI GACNNNGTC 1 cut(s) 238
PinAI ACCGGT 1 cut(s) 830
PkrI GCNGC 2 cut(s) 147, 361
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 499
Psp5II RGGWCCY 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 6, 501
PspPI GGNCC 3 cut(s) 4, 499, 828
PspPPI RGGWCCY 1 cut(s) 499
PsyI GACNNNGTC 1 cut(s) 238
RsaI GTAC 2 cut(s) 463, 838
RsaNI GTAC 2 cut(s) 462, 837
RseI CAYNNNNRTG 1 cut(s) 256
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 3 cut(s) 611, 654, 771
SatI GCNGC 2 cut(s) 146, 360
Sau3AI GATC 4 cut(s) 89, 107, 535, 889
Sau96I GGNCC 3 cut(s) 4, 499, 828
SchI GAGTC 1 cut(s) 127
SduI GDGCHC 2 cut(s) 808, 820
SetI ASST 6 cut(s) 67, 80, 157, 328, 501, 902
SfaNI GCATC 3 cut(s) 59, 146, 227
SfcI CTRYAG 1 cut(s) 723
SinI GGWCC 2 cut(s) 499, 828
SmiMI CAYNNNNRTG 1 cut(s) 256
SmlI CTYRAG 4 cut(s) 243, 653, 714, 849
SmoI CTYRAG 4 cut(s) 243, 653, 714, 849
Sse9I AATT 6 cut(s) 38, 111, 268, 330, 395, 455
SsiI CCGC 2 cut(s) 48, 145
SspI AATATT 1 cut(s) 973
SspMI CTAG 3 cut(s) 141, 282, 809
TaaI ACNGT 3 cut(s) 226, 240, 350
TaqI TCGA 2 cut(s) 116, 164
TasI AATT 6 cut(s) 38, 111, 268, 330, 395, 455
TatI WGTACW 1 cut(s) 461
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 2 cut(s) 43, 166
Tru1I TTAA 3 cut(s) 611, 654, 771
Tru9I TTAA 3 cut(s) 611, 654, 771
TseFI GTSAC 2 cut(s) 78, 260
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 2 cut(s) 78, 260
TspDTI ATGAA 4 cut(s) 333, 359, 507, 702
TspGWI ACGGA 1 cut(s) 593
Tth111I GACNNNGTC 1 cut(s) 238
Vha464I CTTAAG 1 cut(s) 653
VneI GTGCAC 1 cut(s) 804
VpaK11BI GGWCC 2 cut(s) 499, 828
XapI RAATTY 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 3 cut(s) 141, 282, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.