Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000136

Physical Location & Seq

Genomic Coordinates Reverse (-)

15484493 .. 15485597

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21851.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAACAAAGTGGAGAAGAATCTGATAAATTTAGTGTGTGGAAAAAAACATGCAAAGAATCCAATCCAGAAGTTGCCCAAGTCATTAACGAATACAACAGGAAACTGTCACTAGTGAGACCAATGGAAGACCAAAATCTTACAGCTGTAAAAGACCGTGTTTTTCATGATGTTATCGGAGAGGATGGTCATGGTTATTGTCGTACCTATGGTTCTACTGTGCCTCGCAATTTGGTATATCCACAAGAACCATTGGAAACTGCTGGTAGCAATGACCTTATAGCCAAAATCACTGAAGAGGTAACAGAGAAACTGAAAGAGTCTTTTGATAAGAAATTGGAGGATGCTATTAAAATGCTTCAAGCTCAGATTGCTAATAATATGGATTGCACAATTGCACATGGGGGAAGAAACACAATTGCACGTGGACTGGTACCAGCTGATGCAACAAGTGGCCATGAGGCTAGGAGGGAGTCCATAGGAGAGGGAGATCATGAGGCCACTGCCAATTTTGATTCAACTTCTGATGATGTCACTGGTCACCATGATGCTCCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010179 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

187

Amino Acids

20.53

Weight (kDa)

4.92

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica	MD16G1158000.v1.1
prunus_persica	Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata	RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora	Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa	Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha	Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana	Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	433
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	425
AfaI	GTAC	2 cut(s)	205, 435
AgsI	TTSAA	2 cut(s)	362, 519
AhlI	ACTAGT	1 cut(s)	112
AluBI	AGCT	3 cut(s)	146, 365, 440
AluI	AGCT	3 cut(s)	146, 365, 440
Alw26I	GTCTC	1 cut(s)	112
AoxI	GGCC	2 cut(s)	454, 498
ApoI	RAATTY	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	433
BbrPI	CACGTG	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	135
BccI	CCATC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	112
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	2 cut(s)	113, 465
BmiI	GGNNCC	1 cut(s)	435
BmsI	GCATC	3 cut(s)	334, 433, 538
BpiI	GAAGAC	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	435, 541
Bse3DI	GCAATG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	190, 349
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	435, 541
BshFI	GGCC	2 cut(s)	456, 500
BshNI	GGYRCC	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	456, 500
Bso31I	GGTCTC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	490
BspANI	GGCC	2 cut(s)	456, 500
BspCNI	CTCAG	1 cut(s)	379
BspHI	TCATGA	2 cut(s)	166, 493
BspLI	GGNNCC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	435, 541
BssMI	GATC	1 cut(s)	490
Bst4CI	ACNGT	3 cut(s)	108, 158, 220
Bst6I	CTCTTC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	366
BstEII	GGTNACC	1 cut(s)	539
BstF5I	GGATG	2 cut(s)	190, 349
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	54
BstPI	GGTNACC	1 cut(s)	539
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	456, 500
BtsCI	GGATG	2 cut(s)	190, 349
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	3 cut(s)	291, 501, 534
CciI	TCATGA	2 cut(s)	166, 493
Csp6I	GTAC	2 cut(s)	204, 434
CviAII	CATG	7 cut(s)	51, 167, 191, 401, 458, 494, 545
CviJI	RGCY	7 cut(s)	146, 284, 365, 440, 456, 464, 500
CviKI_1	RGCY	7 cut(s)	146, 284, 365, 440, 456, 464, 500
CviQI	GTAC	2 cut(s)	204, 434
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	425
Eco91I	GGTNACC	1 cut(s)	539
EcoO65I	GGTNACC	1 cut(s)	539
FaeI	CATG	7 cut(s)	54, 170, 194, 404, 461, 497, 548
FatI	CATG	7 cut(s)	50, 166, 190, 400, 457, 493, 544
FokI	GGATG	2 cut(s)	197, 356
FspBI	CTAG	2 cut(s)	113, 465
HaeIII	GGCC	2 cut(s)	456, 500
Hin1II	CATG	7 cut(s)	54, 170, 194, 404, 461, 497, 548
HinfI	GANTC	5 cut(s)	20, 59, 320, 473, 515
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	4 cut(s)	25, 179, 369, 526
Hpy188III	TCNNGA	3 cut(s)	68, 167, 494
Hpy8I	GTNNAC	1 cut(s)	428
HpyCH4III	ACNGT	3 cut(s)	108, 158, 220
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	6 cut(s)	54, 390, 398, 422, 446, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	7 cut(s)	54, 170, 194, 404, 461, 497, 548
KpnI	GGTACC	1 cut(s)	437
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	1 cut(s)	556
LpnPI	CCDG	6 cut(s)	81, 85, 249, 416, 450, 522
LweI	GCATC	3 cut(s)	334, 433, 538
MaeI	CTAG	2 cut(s)	113, 465
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	4 cut(s)	108, 301, 532, 539
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	4 cut(s)	29, 140, 308, 420
MfeI	CAATTG	2 cut(s)	393, 417
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	6 cut(s)	29, 229, 335, 393, 417, 508
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	2 cut(s)	329, 482
MnlI	CCTC	8 cut(s)	175, 234, 292, 334, 454, 462, 478, 490
Mox20I	TGGCCA	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	2 cut(s)	87, 351
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	456
MspA1I	CMGCKG	2 cut(s)	146, 440
MunI	CAATTG	2 cut(s)	393, 417
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	7 cut(s)	54, 170, 194, 404, 461, 497, 548
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	3 cut(s)	108, 532, 539
NspI	RCATGY	1 cut(s)	54
PagI	TCATGA	2 cut(s)	166, 493
PfeI	GAWTC	3 cut(s)	20, 59, 515
PleI	GAGTC	2 cut(s)	328, 481
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
PpsI	GAGTC	2 cut(s)	328, 481
Ppu21I	YACGTR	1 cut(s)	425
PspCI	CACGTG	1 cut(s)	425
PspEI	GGTNACC	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	435
PsrI	GAACNNNNNNTAC	2 cut(s)	196, 228
PvuII	CAGCTG	2 cut(s)	146, 440
RsaI	GTAC	2 cut(s)	205, 435
RsaNI	GTAC	2 cut(s)	204, 434
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	87, 351
Sau3AI	GATC	1 cut(s)	490
SchI	GAGTC	2 cut(s)	329, 482
SetI	ASST	7 cut(s)	148, 209, 279, 303, 367, 427, 442
SfaNI	GCATC	3 cut(s)	334, 433, 538
SmiMI	CAYNNNNRTG	1 cut(s)	546
SpeI	ACTAGT	1 cut(s)	112
Sse9I	AATT	6 cut(s)	29, 229, 335, 393, 417, 508
SspMI	CTAG	2 cut(s)	113, 465
TaaI	ACNGT	3 cut(s)	108, 158, 220
TaiI	ACGT	1 cut(s)	427
TasI	AATT	6 cut(s)	29, 229, 335, 393, 417, 508
TfiI	GAWTC	3 cut(s)	20, 59, 515
Tru1I	TTAA	2 cut(s)	87, 351
Tru9I	TTAA	2 cut(s)	87, 351
TscAI	CASTG	3 cut(s)	298, 508, 541
TseFI	GTSAC	3 cut(s)	108, 532, 539
Tsp45I	GTSAC	3 cut(s)	108, 532, 539
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	3 cut(s)	298, 508, 541
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	54
XspI	CTAG	2 cut(s)	113, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.