Rmu_sc0012130.1_g000008

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012130.1
OG0000136
Physical Location & Seq
Forward (+)
26768 .. 34583
7816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012130.1_g000008.1.cds

Sequence Viewer

Length: 996 bp
atgtttcttgcaactttggtagaagctgaagcacaatctgctacctttattactagaggtcacaataaaggtatcccagagtggaatactggagttaaaatcaagattatgtttgattctaacttccaacctgttggagaaagagctacacagctaaagtcacaattggggcaaattgtacgtgatgaccagaggattccactaacattaattgactggaaggctgttggacctgatgtgaaagagggaatatggaaagaggttcaggaggaatatgacaagaaattgctaatggaacctgaggaccagcgagaacttaaggctgtaaaagatcgaatattccatgaattgcttggagaagatggtcatggttattgtcgtacctatggttctactgtgcctcgcagtttggtgtatccacaggaatcaatgccttctcataacaccaatgacctcatacagaaaataactgaagaggttacagagaaagtgaaagaggctttcacaaggaagatgcaggaccaattagatatgcttcaagctcggattaactttttagagagcaatgaggggcaaaacagaaatccatgtggacagatagtgtacgaggatgagatccatgaaaagattgggttaccaccaagtgatgtgataaatattccgactgttgtgatactaggtgaggtacctgtatccattgttgatcgagaaaaacgctccgctctctctcctcacctgcgatcgacccgacccgaacccgacattcccaccaggttggaactccattctccagcgacctacagccttgaaatctgcacagaacgattcgcctcccttgtgcgatcttctctgtggcagcctttagctgcaattctcagtggaggaagtacagcaaggcggcgactttttggagaaatcgaacccaatcggttctccaatctccgacgtcgacggggctttaaacttagcttggggagctcgcagcaacctccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

331

Amino Acids

37.65

Weight (kDa)

6.23

Isoelectric Point (pI)

55.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 744
AatII GACGTC 1 cut(s) 949
Acc36I ACCTGC 1 cut(s) 744
Acc65I GGTACC 1 cut(s) 685
AccB1I GGYRCC 1 cut(s) 685
AccBSI CCGCTC 1 cut(s) 722
AccI GTMKAC 1 cut(s) 949
AciI CCGC 2 cut(s) 720, 898
AclWI GGATC 1 cut(s) 610
AcuI CTGAAG 2 cut(s) 48, 492
AcyI GRCGYC 1 cut(s) 946
AdeI CACNNNGTG 1 cut(s) 644
AfaI GTAC 5 cut(s) 180, 382, 605, 687, 889
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 539, 809
AjnI CCWGG 1 cut(s) 770
AluBI AGCT 7 cut(s) 26, 146, 154, 542, 866, 969, 978
AluI AGCT 7 cut(s) 26, 146, 154, 542, 866, 969, 978
Alw21I GWGCWC 1 cut(s) 980
AlwI GGATC 1 cut(s) 610
ApeKI GCWGC 3 cut(s) 856, 866, 982
AseI ATTAAT 1 cut(s) 209
Asp718I GGTACC 1 cut(s) 685
AspS9I GGNCC 3 cut(s) 230, 304, 520
AsuHPI GGTGA 2 cut(s) 692, 725
AvaII GGWCC 3 cut(s) 230, 304, 520
AxyI CCTNAGG 1 cut(s) 300
BanI GGYRCC 1 cut(s) 685
BanII GRGCYC 1 cut(s) 980
Bbv12I GWGCWC 1 cut(s) 980
BbvI GCAGC 2 cut(s) 853, 868
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 772
BciVI GTATCC 3 cut(s) 83, 426, 703
BfaI CTAG 2 cut(s) 54, 677
BfmI CTRYAG 1 cut(s) 799
BfrI CTTAAG 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 744
BfuI GTATCC 3 cut(s) 83, 426, 703
BisI GCNGC 4 cut(s) 857, 867, 899, 983
BlsI GCNGC 4 cut(s) 858, 868, 900, 984
Bme1390I CCNGG 1 cut(s) 772
Bme18I GGWCC 3 cut(s) 230, 304, 520
BmgT120I GGNCC 3 cut(s) 230, 304, 520
BmiI GGNNCC 2 cut(s) 297, 687
BmrFI CCNGG 1 cut(s) 772
BmsI GCATC 1 cut(s) 504
BpmI CTGGAG 2 cut(s) 111, 774
BsaAI YACGTR 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 946
Bse1I ACTGG 2 cut(s) 94, 221
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 571
BseBI CCWGG 1 cut(s) 772
BseGI GGATG 1 cut(s) 616
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 2 cut(s) 291, 889
BseNI ACTGG 2 cut(s) 94, 221
BseRI GAGGAG 1 cut(s) 720
BseXI GCAGC 2 cut(s) 853, 868
BsgI GTGCAG 1 cut(s) 799
Bsh1285I CGRYCG 1 cut(s) 743
BshNI GGYRCC 1 cut(s) 685
BsiEI CGRYCG 1 cut(s) 743
BsiHKAI GWGCWC 1 cut(s) 980
Bsp1286I GDGCHC 1 cut(s) 980
Bsp143I GATC 5 cut(s) 331, 615, 703, 740, 842
BspACI CCGC 2 cut(s) 720, 898
BspCNI CTCAG 2 cut(s) 292, 888
BspLI GGNNCC 2 cut(s) 297, 687
BspMI ACCTGC 1 cut(s) 744
BspPI GGATC 1 cut(s) 610
BspT107I GGYRCC 1 cut(s) 685
BspTI CTTAAG 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 722
BsrDI GCAATG 1 cut(s) 571
BsrI ACTGG 2 cut(s) 94, 221
BssMI GATC 5 cut(s) 331, 615, 703, 740, 842
BssNI GRCGYC 1 cut(s) 946
Bst2UI CCWGG 1 cut(s) 772
Bst4CI ACNGT 2 cut(s) 397, 667
Bst6I CTCTTC 1 cut(s) 468
BstACI GRCGYC 1 cut(s) 946
BstAFI CTTAAG 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 980
BstDEI CTNAG 3 cut(s) 300, 875, 965
BstEII GGTNACC 1 cut(s) 633
BstF5I GGATG 1 cut(s) 616
BstKTI GATC 5 cut(s) 334, 618, 706, 743, 845
BstMBI GATC 5 cut(s) 331, 615, 703, 740, 842
BstMCI CGRYCG 1 cut(s) 743
BstMWI GCNNNNNNNGC 2 cut(s) 38, 975
BstNI CCWGG 1 cut(s) 772
BstPI GGTNACC 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 770
BstSFI CTRYAG 1 cut(s) 799
BstV1I GCAGC 2 cut(s) 853, 868
BstX2I RGATCY 1 cut(s) 615
BstXI CCANNNNNNTGG 2 cut(s) 134, 775
BstYI RGATCY 1 cut(s) 615
Bsu36I CCTNAGG 1 cut(s) 300
BsuI GTATCC 3 cut(s) 83, 426, 703
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 883
BveI ACCTGC 1 cut(s) 744
Cac8I GCNNGC 1 cut(s) 980
Cfr13I GGNCC 3 cut(s) 230, 304, 520
CsiI ACCWGGT 1 cut(s) 770
Csp6I GTAC 5 cut(s) 179, 381, 604, 686, 888
CviAII CATG 4 cut(s) 344, 368, 588, 620
CviQI GTAC 5 cut(s) 179, 381, 604, 686, 888
DdeI CTNAG 3 cut(s) 300, 875, 965
DpnI GATC 5 cut(s) 333, 617, 705, 742, 844
DpnII GATC 5 cut(s) 331, 615, 703, 740, 842
DraI TTTAAA 1 cut(s) 961
DraIII CACNNNGTG 1 cut(s) 644
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Ecl136II GAGCTC 1 cut(s) 978
Eco24I GRGCYC 1 cut(s) 980
Eco47I GGWCC 3 cut(s) 230, 304, 520
Eco53kI GAGCTC 1 cut(s) 978
Eco57I CTGAAG 2 cut(s) 48, 492
Eco81I CCTNAGG 1 cut(s) 300
Eco91I GGTNACC 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 978
EcoO65I GGTNACC 1 cut(s) 633
EcoRII CCWGG 1 cut(s) 770
EcoT38I GRGCYC 1 cut(s) 980
FaeI CATG 4 cut(s) 347, 371, 591, 623
FatI CATG 4 cut(s) 343, 367, 587, 619
FblI GTMKAC 1 cut(s) 949
Fnu4HI GCNGC 4 cut(s) 857, 867, 899, 983
FokI GGATG 1 cut(s) 623
FriOI GRGCYC 1 cut(s) 980
Fsp4HI GCNGC 4 cut(s) 857, 867, 899, 983
FspBI CTAG 2 cut(s) 54, 677
GluI GCNGC 4 cut(s) 857, 867, 899, 983
GsuI CTGGAG 2 cut(s) 111, 774
Hin1I GRCGYC 1 cut(s) 946
Hin1II CATG 4 cut(s) 347, 371, 591, 623
HincII GTYRAC 1 cut(s) 950
HindII GTYRAC 1 cut(s) 950
HinfI GANTC 4 cut(s) 116, 196, 425, 825
HphI GGTGA 2 cut(s) 692, 725
Hpy166II GTNNAC 3 cut(s) 593, 604, 950
Hpy188I TCNGA 3 cut(s) 546, 663, 944
Hpy188III TCNNGA 3 cut(s) 103, 266, 707
Hpy8I GTNNAC 3 cut(s) 593, 604, 950
Hpy99I CGWCG 3 cut(s) 948, 951, 954
HpyAV CCTTC 2 cut(s) 214, 444
HpyCH4III ACNGT 2 cut(s) 397, 667
HpyCH4IV ACGT 2 cut(s) 181, 946
HpyCH4V TGCA 4 cut(s) 11, 517, 816, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 975
HpyF3I CTNAG 3 cut(s) 300, 875, 965
HpySE526I ACGT 2 cut(s) 181, 946
Hsp92I GRCGYC 1 cut(s) 946
Hsp92II CATG 4 cut(s) 347, 371, 591, 623
KpnI GGTACC 1 cut(s) 689
Kzo9I GATC 5 cut(s) 331, 615, 703, 740, 842
LmnI GCTCC 2 cut(s) 722, 975
Lsp1109I GCAGC 2 cut(s) 853, 868
LweI GCATC 1 cut(s) 504
MabI ACCWGGT 1 cut(s) 770
MaeI CTAG 2 cut(s) 54, 677
MaeII ACGT 2 cut(s) 181, 946
MaeIII GTNAC 4 cut(s) 59, 159, 478, 633
MalI GATC 5 cut(s) 333, 617, 705, 742, 844
MbiI CCGCTC 1 cut(s) 722
MboI GATC 5 cut(s) 331, 615, 703, 740, 842
MboII GAAGA 4 cut(s) 371, 485, 523, 837
MfeI CAATTG 1 cut(s) 164
MflI RGATCY 1 cut(s) 615
MhlI GDGCHC 1 cut(s) 980
MluCI AATT 7 cut(s) 164, 174, 210, 284, 347, 524, 870
MmeI TCCRAC 6 cut(s) 115, 151, 208, 686, 756, 967
MseI TTAA 6 cut(s) 96, 209, 318, 549, 960, 994
MspCI CTTAAG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 772
MunI CAATTG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 772
MwoI GCNNNNNNNGC 2 cut(s) 38, 975
NdeII GATC 5 cut(s) 331, 615, 703, 740, 842
NlaIII CATG 4 cut(s) 347, 371, 591, 623
NlaIV GGNNCC 2 cut(s) 297, 687
NmuCI GTSAC 2 cut(s) 59, 159
PaqCI CACCTGC 1 cut(s) 744
PfeI GAWTC 4 cut(s) 116, 196, 425, 825
PkrI GCNGC 4 cut(s) 858, 868, 900, 984
Ple19I CGATCG 1 cut(s) 743
Ppu21I YACGTR 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 980
Psp6I CCWGG 1 cut(s) 770
PspEI GGTNACC 1 cut(s) 633
PspGI CCWGG 1 cut(s) 770
PspN4I GGNNCC 2 cut(s) 297, 687
PspPI GGNCC 3 cut(s) 230, 304, 520
PsrI GAACNNNNNNTAC 2 cut(s) 373, 405
PsuI RGATCY 1 cut(s) 615
PvuI CGATCG 1 cut(s) 743
RsaI GTAC 5 cut(s) 180, 382, 605, 687, 889
RsaNI GTAC 5 cut(s) 179, 381, 604, 686, 888
SacI GAGCTC 1 cut(s) 980
SalI GTCGAC 1 cut(s) 948
SaqAI TTAA 6 cut(s) 96, 209, 318, 549, 960, 994
SatI GCNGC 4 cut(s) 857, 867, 899, 983
Sau3AI GATC 5 cut(s) 331, 615, 703, 740, 842
Sau96I GGNCC 3 cut(s) 230, 304, 520
ScrFI CCNGG 1 cut(s) 772
SduI GDGCHC 1 cut(s) 980
SexAI ACCWGGT 1 cut(s) 770
SfaNI GCATC 1 cut(s) 504
SfcI CTRYAG 1 cut(s) 799
SgrDI CGTCGACG 1 cut(s) 948
SinI GGWCC 3 cut(s) 230, 304, 520
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 7 cut(s) 164, 174, 210, 284, 347, 524, 870
SsiI CCGC 2 cut(s) 720, 898
SspI AATATT 2 cut(s) 339, 658
SspMI CTAG 2 cut(s) 54, 677
SstI GAGCTC 1 cut(s) 980
StyD4I CCNGG 1 cut(s) 770
TaaI ACNGT 2 cut(s) 397, 667
TaiI ACGT 2 cut(s) 184, 949
TaqI TCGA 5 cut(s) 334, 706, 743, 918, 949
TasI AATT 7 cut(s) 164, 174, 210, 284, 347, 524, 870
TatI WGTACW 1 cut(s) 887
TauI GCSGC 1 cut(s) 901
TfiI GAWTC 4 cut(s) 116, 196, 425, 825
Tru1I TTAA 6 cut(s) 96, 209, 318, 549, 960, 994
Tru9I TTAA 6 cut(s) 96, 209, 318, 549, 960, 994
TscAI CASTG 1 cut(s) 883
TseFI GTSAC 2 cut(s) 59, 159
TseI GCWGC 3 cut(s) 856, 866, 982
Tsp45I GTSAC 2 cut(s) 59, 159
TspDTI ATGAA 2 cut(s) 360, 636
TspRI CASTG 1 cut(s) 883
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 3 cut(s) 230, 304, 520
VspI ATTAAT 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 2 cut(s) 350, 626
XmiI GTMKAC 1 cut(s) 949
XspI CTAG 2 cut(s) 54, 677
ZraI GACGTC 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.