Rorug04G0004500

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
882214 .. 886271
4058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0004500.1

Sequence Viewer

Length: 3183 bp
ATGGCATCTTCATCAAACAAGAAAACATTGCCTAACTCACCATCATCCGTCGGCCGGCCACCGTCATCATCTGTCAAATTTGCTCGCCGGACGTCGAGCGGGCGTGTCATGAGCTTGTCCCGGGACGATGACCTGGACATGAGCGGAGAAATGTCGGGTGAAAATGACTACATCAATTACACGGTGATGATGCCGCCGACGCCGGACAACCAGCCTGGAGAGGAAGCCAAGGCCGACAGTACTGCGGGGACTTACTCTGCCTCACGGTTCGGGACAGAGCCGAGACGACGGAATGATGGTGGCGGCGGCGGCGGCGAAGCGTCGAAGATGGATAGGAGAATGTCGGTGATGAGCTCATCTAATAACAAATCAATATTGTTGAGAAGCCAAACTGGGGACTTTGATCACAACCGTTGGTTATTCGAGACAAAGGGAACGTACGGCATCGGAAACGCGTTTTGGTCGCAGAAGGACGAGGACTCGTATAATGGGCCCACAGGCGATATGAACATGCAGGACTTTATTGACAAGCCATGGAAGCCACTCACCAGGAAGGTTTCAGTTCCTCCTGCTATTCTTAGCCCTTACCGGTTATTGGTGGTGATTCGTCTGATAGTACTTTCCTTTTTCCTAGTGTGGCGAGTACAGAATCCAAACCCAGATGCAATGTGGCTATGGGGGATTTCCATAGTTTGTGAGATTTGGTTTGCGTTCTCATGGCTACTAGACATACTTCCCAAAATGAATCCCATAAACCGTGCCACAGACTTGTCTGCCCTACATGACAAGTTTGAGCAGCCCTCGCCGCAAAACCCCACCGGAAGGTCTGACCTGCCTGGCGTCGATGTATTCGTGTCCACTGCTGACGCAGAGAAGGAACCACCGCTTGTCACAGCCAATACCATGCTCTCCATCCTTGCTGTTGATTACCCTGTGGAAAAACTTTCAGCCTACATTTCAGATGATGGCGGTGCCATTCTCACATTTGAGGCCATGGCCGAGGCTGTAGCCTTTGCTGAGGTCTGGGTACCCTTTTGCCGAAAACACAACATAGAGCCAAGGAATCCAGACAGTTACTTCAACAGCAAGGTAGACCCAACCAAGAACAAGAAGCGGCCCGATTTTGTCAAGGACAGGCGTTGGATCAAGAGAGAGTATGATGAGTTCAAGGTCAGGATCAACGGTCTGCCTGATGTAATACGTAAGCGATGTGAAATGTATAACTGTAGAGAGGAAAGGAAGCTTACAAAGGAAACAAGTACTGGTGGATCAGCTCGATCAATAGAGCCATTGGGTGATAATGCTGTTGATGAGCCAGGTTCCACAGTCCCCAAGGCCACGTGGATGGCCGACGGAACACACTGGCCGGGGACATGGCTGGAACCTTGTGCTGATCATAAAAAGGGAGACCATGCTGGCATCCTACAGGTGATGAGTAAGGTCCCAGATGTGGAACCCGTAATGGGTTTTCTTGACGAGAAAAAACTAGACTTCACAGGAGTGGACATTCGGGTCCCCATGTTTGCCTATGTGTCCAGGGAAAAGCGTCCTGGCTACGACCACAACAAGAAGGCAGGAGCCATGAATGCCATGGTTAGAGCATCAGCAGTATTGTCTAACGGCCCATTTATACTGAATCTCGACTGTGACCATTATATCTATAACTCCAAGGCTATAAGGGAAGGAATGTGCTTCATGATGGACCGTGGAGGAGATCGCATTTGCTACATACAGTTCCCTCAGAGATTCGAAGGGATCGATCCATCTGATCGTTATGCTAATCATAACACAGTCTTCTTTGATGGAAATATGAGAGCCTTGGACGGTCTGCAAGGGCCAGTGTATGTGGGAACTGGGTGCATGTTCAGGCGTTTTGCACTCTACGGCTTCCACCCGCCAAGGGCGCATGAGTACCTGGGGGTATTTGGCCACAAAAAAGCTCCAGCACCACAATATCAGACTATGGATTCTGTAAGATTACGGCCTTCTGAAGAAGGAGACGAAGCAGCGCCTCTAGCAGAACACCCCGACTTGGGACTTCCAATCAAGTTTGGAAATTCTCAAGTATTCACTGATTCCATAGCTGTTGCTGAGTTTCAAGGACGGCCTCTTGCTGATCATGAAACAGTCAAGAATGGCCGCCCTCCTGGCGCCCTGCTAGAACCACGTCCCCCACTCGATGCACCCACTGTTGCCGAAGCGGTTGCTGTTATTTCCTGCTGGTTTGAGGAAAACACCGAATGGGGAGACAGGATAGGTTGGATTTATGGATCGGTGACAGAGGATGTGGTGACAGGTTACCGAATGCACAATCGTGGATGGCGGTCTGTGTATTGCATAACCAAGCGTGACGCATTCCGCGGCACTGCACCTATCAACCTGACAGACAGATTGCACCAGGTGCTTCGATGGGCCACTGGTTCAGTGGAAATCTTCTACTCTAGAAACAATGCATTCCTGGCATGCCGACGCCTCAAGTTCCTACAGCGTATTGCATACCTCAATGTCGGCATTTATCCCTTCACCTCCGTCTTTCTGGTGGTTTATTGTTTCCTCCCTGCACTCTGCCTCTTTTCAGGACAATTCATAGTGGCAGGTCTAAATATTCCCTTCCTTTCCTACCTCCTTACCATCACGATATGTCTCATTCTTATCTCCATACTTGAAGTCAGATGGTCCGGCATTGGTCTTGAGGAATGGTGGCGTAATGAGCAGTTTTGGTGCATTGGTGGAACCAGTGCTCACCTTGCCGCTGTCATCCAGGGACTCCTCAAAGTCATAGCGGGCATCGAAATTTCCTTCACCTTAACCTCCAAGTCTGCCGGCGATGACGAAGATGACATTTACGCTGATCTTTACATAGTCAAATGGACAAGTCTCTTCATCATGCCAATATTAATCATAGTTACCAACATTATTGCAGCTGTCATTGGAATATCAAGGACCTTATACGCTGTCATACCCCAATGGAATAAGCTACTCGGAGGACTCTTCTTCAGTTTTTGGGTGTTGGCTCACATGTACCCATTTATGAAAGGCTTGATGGGAAGGAGAGGAAGGATACCTACCATCGTATATGTATGGGCGGGACTGCTCGCTATTACAGTGTCTTTGCTTTGGCTGACACTCAATCCTCCTGGCAGTGGTATGACTGGTGCTGGTGGTGGAGAGATAAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1060

Amino Acids

118.55

Weight (kDa)

6.83

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cellulose_synt PF03552 281 - 1047 0.0 Cellulose synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1511
AatII GACGTC 1 cut(s) 95
Acc36I ACCTGC 2 cut(s) 840, 2585
Acc65I GGTACC 1 cut(s) 1027
AccB1I GGYRCC 3 cut(s) 971, 1027, 2150
AccBSI CCGCTC 2 cut(s) 99, 144
AccI GTMKAC 1 cut(s) 1092
AccII CGCG 2 cut(s) 455, 2361
AclWI GGATC 6 cut(s) 1151, 1184, 1276, 1754, 1763, 2278
AcoI YGGCCR 7 cut(s) 52, 56, 996, 1347, 1364, 1927, 2137
AcsI RAATTY 3 cut(s) 77, 2056, 2793
AcuI CTGAAG 2 cut(s) 2010, 2980
AcvI CACGTG 1 cut(s) 1341
AcyI GRCGYC 5 cut(s) 92, 200, 840, 2151, 2470
AdeI CACNNNGTG 1 cut(s) 2401
AfaI GTAC 8 cut(s) 241, 440, 618, 645, 1029, 1261, 1913, 3023
AflIII ACRYGT 2 cut(s) 453, 3018
AgeI ACCGGT 1 cut(s) 588
AgsI TTSAA 4 cut(s) 1081, 1168, 2099, 2666
AjiI CACGTC 1 cut(s) 2168
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AleI CACNNNNGTG 2 cut(s) 1499, 2313
AluBI AGCT 8 cut(s) 114, 354, 1243, 1274, 1940, 2084, 2924, 2977
AluI AGCT 8 cut(s) 114, 354, 1243, 1274, 1940, 2084, 2924, 2977
Alw21I GWGCWC 2 cut(s) 356, 2743
Alw26I GTCTC 7 cut(s) 277, 419, 1401, 1992, 2241, 2648, 2882
AlwI GGATC 6 cut(s) 1151, 1184, 1276, 1754, 1763, 2278
Ama87I CYCGRG 1 cut(s) 120
ApaI GGGCCC 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 796, 2006, 2921
ApoI RAATTY 3 cut(s) 77, 2056, 2793
AseI ATTAAT 1 cut(s) 2897
AsiGI ACCGGT 1 cut(s) 588
Asp718I GGTACC 1 cut(s) 1027
AspLEI GCGC 3 cut(s) 1906, 2011, 2153
AsuC2I CCSGG 3 cut(s) 121, 122, 1368
AsuII TTCGAA 1 cut(s) 1749
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 5 cut(s) 1441, 1513, 1702, 2676, 2943
BaeGI GKGCMC 1 cut(s) 495
BalI TGGCCA 1 cut(s) 1929
BanI GGYRCC 3 cut(s) 971, 1027, 2150
BanII GRGCYC 2 cut(s) 356, 495
BarI GAAGNNNNNNTAC 2 cut(s) 3049, 3081
BbrPI CACGTG 1 cut(s) 1341
BbsI GAAGAC 1 cut(s) 1786
Bbv12I GWGCWC 2 cut(s) 356, 2743
BbvCI CCTCAGC 1 cut(s) 1017
BbvI GCAGC 3 cut(s) 808, 2018, 2933
BceAI ACGGC 5 cut(s) 457, 1636, 1900, 1997, 2120
BcgI CGANNNNNNTGC 4 cut(s) 224, 258, 2186, 2220
BciVI GTATCC 1 cut(s) 3054
BclI TGATCA 3 cut(s) 403, 1393, 2116
BcnI CCSGG 3 cut(s) 121, 122, 1368
BcoDI GTCTC 7 cut(s) 277, 419, 1401, 1992, 2241, 2648, 2882
BfaI CTAG 6 cut(s) 632, 725, 1487, 2015, 2159, 2442
BfmI CTRYAG 4 cut(s) 1005, 1225, 1424, 2483
BfoI RGCGCY 2 cut(s) 2012, 2154
BfuAI ACCTGC 2 cut(s) 840, 2585
BfuI GTATCC 1 cut(s) 3054
BglI GCCNNNNNGGC 1 cut(s) 2148
BmcAI AGTACT 3 cut(s) 241, 618, 1261
Bme18I GGWCC 5 cut(s) 1441, 1513, 1702, 2676, 2943
BmeT110I CYCGRG 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 2168
BmrI ACTGGG 2 cut(s) 402, 1863
BmsI GCATC 8 cut(s) 14, 180, 453, 652, 1428, 1610, 2170, 2796
BmuI ACTGGG 2 cut(s) 402, 1863
BpiI GAAGAC 1 cut(s) 1786
BplI GAGNNNNNCTC 2 cut(s) 785, 817
BpmI CTGGAG 2 cut(s) 237, 1926
Bpu10I CCTNAGC 1 cut(s) 1017
Bpu14I TTCGAA 1 cut(s) 1749
BpuEI CTTGAG 3 cut(s) 2046, 2459, 2711
BpuMI CCSGG 3 cut(s) 121, 122, 1368
Bsa29I ATCGAT 1 cut(s) 1758
BsaAI YACGTR 2 cut(s) 1202, 1341
BsaHI GRCGYC 5 cut(s) 92, 200, 840, 2151, 2470
BsaI GGTCTC 1 cut(s) 1401
BsaWI WCCGGW 2 cut(s) 588, 818
Bse118I RCCGGY 3 cut(s) 54, 588, 2822
Bse1I ACTGG 8 cut(s) 397, 1267, 1367, 1838, 1858, 2422, 2736, 3157
Bse3DI GCAATG 2 cut(s) 26, 672
BseCI ATCGAT 1 cut(s) 1758
BseGI GGATG 7 cut(s) 44, 912, 1350, 1419, 2290, 2324, 2757
BseMI GCAATG 2 cut(s) 26, 672
BseMII CTCAG 3 cut(s) 1008, 1754, 2082
BseNI ACTGG 8 cut(s) 397, 1267, 1367, 1838, 1858, 2422, 2736, 3157
BseRI GAGGAG 2 cut(s) 1725, 2759
BseSI GKGCMC 1 cut(s) 495
BseX3I CGGCCG 1 cut(s) 52
BseXI GCAGC 3 cut(s) 808, 2018, 2933
BsgI GTGCAG 2 cut(s) 2352, 2544
Bsh1236I CGCG 2 cut(s) 455, 2361
Bsh1285I CGRYCG 1 cut(s) 55
BshNI GGYRCC 3 cut(s) 971, 1027, 2150
BshTI ACCGGT 1 cut(s) 588
BshVI ATCGAT 1 cut(s) 1758
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 2 cut(s) 356, 2743
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 9 cut(s) 55, 88, 121, 203, 589, 819, 1367, 2679, 2823
BsiWI CGTACG 1 cut(s) 438
BsmAI GTCTC 7 cut(s) 277, 419, 1401, 1992, 2241, 2648, 2882
BsmBI CGTCTC 2 cut(s) 277, 1992
BsmI GAATGC 4 cut(s) 1591, 2310, 2354, 2453
Bso31I GGTCTC 1 cut(s) 1401
BsoBI CYCGRG 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 1749
Bsp120I GGGCCC 1 cut(s) 491
Bsp1286I GDGCHC 3 cut(s) 356, 495, 2743
Bsp19I CCATGG 3 cut(s) 533, 993, 1590
BspCNI CTCAG 3 cut(s) 1009, 1753, 2083
BspDI ATCGAT 1 cut(s) 1758
BspFNI CGCG 2 cut(s) 455, 2361
BspHI TCATGA 3 cut(s) 108, 1695, 2119
BspMI ACCTGC 2 cut(s) 840, 2585
BspPI GGATC 6 cut(s) 1151, 1184, 1276, 1754, 1763, 2278
BspT104I TTCGAA 1 cut(s) 1749
BspT107I GGYRCC 3 cut(s) 971, 1027, 2150
BspTNI GGTCTC 1 cut(s) 1401
BsrBI CCGCTC 2 cut(s) 99, 144
BsrDI GCAATG 2 cut(s) 26, 672
BsrFI RCCGGY 3 cut(s) 54, 588, 2822
BsrI ACTGG 8 cut(s) 397, 1267, 1367, 1838, 1858, 2422, 2736, 3157
BssAI RCCGGY 3 cut(s) 54, 588, 2822
BssNI GRCGYC 5 cut(s) 92, 200, 840, 2151, 2470
BssT1I CCWWGG 9 cut(s) 228, 533, 993, 1058, 1332, 1590, 1668, 1818, 1898
Bst6I CTCTTC 2 cut(s) 2885, 2996
BstACI GRCGYC 5 cut(s) 92, 200, 840, 2151, 2470
BstAPI GCANNNNNTGC 1 cut(s) 2401
BstBAI YACGTR 2 cut(s) 1202, 1341
BstBI TTCGAA 1 cut(s) 1749
BstC8I GCNNGC 8 cut(s) 56, 85, 101, 1417, 2464, 2785, 2824, 3096
BstDEI CTNAG 4 cut(s) 578, 1017, 1740, 2091
BstDSI CCRYGG 5 cut(s) 533, 993, 1590, 1705, 2359
BstEII GGTNACC 1 cut(s) 2297
BstF5I GGATG 7 cut(s) 44, 912, 1350, 1419, 2290, 2324, 2757
BstFNI CGCG 2 cut(s) 455, 2361
BstH2I RGCGCY 2 cut(s) 2012, 2154
BstHHI GCGC 3 cut(s) 1906, 2011, 2153
BstMAI GTCTC 7 cut(s) 277, 419, 1401, 1992, 2241, 2648, 2882
BstMCI CGRYCG 1 cut(s) 55
BstNSI RCATGY 4 cut(s) 514, 1864, 2466, 3022
BstPI GGTNACC 1 cut(s) 2297
BstSFI CTRYAG 4 cut(s) 1005, 1225, 1424, 2483
BstSLI GKGCMC 1 cut(s) 495
BstSNI TACGTA 1 cut(s) 1202
BstUI CGCG 2 cut(s) 455, 2361
BstV1I GCAGC 3 cut(s) 808, 2018, 2933
BstV2I GAAGAC 1 cut(s) 1786
BstXI CCANNNNNNTGG 1 cut(s) 1345
BstZI CGGCCG 1 cut(s) 52
Bsu15I ATCGAT 1 cut(s) 1758
BsuI GTATCC 1 cut(s) 3054
BsuTUI ATCGAT 1 cut(s) 1758
BtgI CCRYGG 5 cut(s) 533, 993, 1590, 1705, 2359
BtgZI GCGATG 2 cut(s) 1222, 2841
BtrI CACGTC 1 cut(s) 2168
BtsCI GGATG 7 cut(s) 44, 912, 1350, 1419, 2290, 2324, 2757
BtsI GCAGTG 3 cut(s) 858, 2364, 3148
BveI ACCTGC 2 cut(s) 840, 2585
Cac8I GCNNGC 8 cut(s) 56, 85, 101, 1417, 2464, 2785, 2824, 3096
CciI TCATGA 3 cut(s) 108, 1695, 2119
CfoI GCGC 3 cut(s) 1906, 2011, 2153
Cfr10I RCCGGY 3 cut(s) 54, 588, 2822
Cfr42I CCGCGG 1 cut(s) 2362
Cfr9I CCCGGG 1 cut(s) 120
ClaI ATCGAT 1 cut(s) 1758
CseI GACGC 7 cut(s) 208, 309, 829, 875, 1535, 2360, 2478
CsiI ACCWGGT 1 cut(s) 2397
Csp6I GTAC 8 cut(s) 240, 439, 617, 644, 1028, 1260, 1912, 3022
CspAI ACCGGT 1 cut(s) 588
CviQI GTAC 8 cut(s) 240, 439, 617, 644, 1028, 1260, 1912, 3022
DdeI CTNAG 4 cut(s) 578, 1017, 1740, 2091
DinI GGCGCC 1 cut(s) 2152
DraIII CACNNNGTG 1 cut(s) 2401
DrdI GACNNNNNNGTC 1 cut(s) 1511
DseDI GACNNNNNNGTC 1 cut(s) 1511
EaeI YGGCCR 7 cut(s) 52, 56, 996, 1347, 1364, 1927, 2137
EagI CGGCCG 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 2885, 2996
EarI CTCTTC 2 cut(s) 2885, 2996
Ecl136II GAGCTC 1 cut(s) 354
EclXI CGGCCG 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 1202
Eco130I CCWWGG 9 cut(s) 228, 533, 993, 1058, 1332, 1590, 1668, 1818, 1898
Eco24I GRGCYC 2 cut(s) 356, 495
Eco31I GGTCTC 1 cut(s) 1401
Eco47I GGWCC 5 cut(s) 1441, 1513, 1702, 2676, 2943
Eco52I CGGCCG 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 2010, 2980
Eco72I CACGTG 1 cut(s) 1341
Eco88I CYCGRG 1 cut(s) 120
Eco91I GGTNACC 1 cut(s) 2297
EcoICRI GAGCTC 1 cut(s) 354
EcoO109I RGGNCCY 3 cut(s) 1441, 1513, 2943
EcoO65I GGTNACC 1 cut(s) 2297
EcoT14I CCWWGG 9 cut(s) 228, 533, 993, 1058, 1332, 1590, 1668, 1818, 1898
EcoT22I ATGCAT 1 cut(s) 2455
EcoT38I GRGCYC 2 cut(s) 356, 495
EgeI GGCGCC 1 cut(s) 2152
EheI GGCGCC 1 cut(s) 2152
ErhI CCWWGG 9 cut(s) 228, 533, 993, 1058, 1332, 1590, 1668, 1818, 1898
Esp3I CGTCTC 2 cut(s) 277, 1992
FauI CCCGC 5 cut(s) 92, 238, 1902, 2776, 3079
FbaI TGATCA 3 cut(s) 403, 1393, 2116
FblI GTMKAC 1 cut(s) 1092
FokI GGATG 7 cut(s) 31, 899, 1357, 1406, 2297, 2331, 2744
FriOI GRGCYC 2 cut(s) 356, 495
FseI GGCCGGCC 1 cut(s) 58
FspBI CTAG 6 cut(s) 632, 725, 1487, 2015, 2159, 2442
GlaI GCGC 3 cut(s) 1905, 2010, 2152
GsuI CTGGAG 2 cut(s) 237, 1926
HaeII RGCGCY 2 cut(s) 2012, 2154
HapII CCGG 9 cut(s) 55, 88, 121, 203, 589, 819, 1367, 2679, 2823
HgaI GACGC 7 cut(s) 208, 309, 829, 875, 1535, 2360, 2478
HhaI GCGC 3 cut(s) 1906, 2011, 2153
Hin1I GRCGYC 5 cut(s) 92, 200, 840, 2151, 2470
Hin6I GCGC 3 cut(s) 1904, 2009, 2151
HinP1I GCGC 3 cut(s) 1904, 2009, 2151
HindIII AAGCTT 1 cut(s) 1241
HpaII CCGG 9 cut(s) 55, 88, 121, 203, 589, 819, 1367, 2679, 2823
Hpy166II GTNNAC 3 cut(s) 858, 1093, 1504
Hpy8I GTNNAC 3 cut(s) 858, 1093, 1504
Hpy99I CGWCG 8 cut(s) 53, 97, 202, 291, 325, 845, 1355, 2472
HpyCH4IV ACGT 5 cut(s) 92, 437, 1201, 1340, 2167
HpyF3I CTNAG 4 cut(s) 578, 1017, 1740, 2091
HpySE526I ACGT 5 cut(s) 92, 437, 1201, 1340, 2167
Hsp92I GRCGYC 5 cut(s) 92, 200, 840, 2151, 2470
HspAI GCGC 3 cut(s) 1904, 2009, 2151
KasI GGCGCC 1 cut(s) 2150
KflI GGGWCCC 1 cut(s) 1513
KpnI GGTACC 1 cut(s) 1031
KroI GCCGGC 2 cut(s) 54, 2822
KroNI GCCGGC 2 cut(s) 56, 2824
Ksp22I TGATCA 3 cut(s) 403, 1393, 2116
KspI CCGCGG 1 cut(s) 2362
LmnI GCTCC 2 cut(s) 1577, 1945
Lsp1109I GCAGC 3 cut(s) 808, 2018, 2933
LweI GCATC 8 cut(s) 14, 180, 453, 652, 1428, 1610, 2170, 2796
MabI ACCWGGT 1 cut(s) 2397
MaeI CTAG 6 cut(s) 632, 725, 1487, 2015, 2159, 2442
MaeII ACGT 5 cut(s) 92, 437, 1201, 1340, 2167
MaeIII GTNAC 8 cut(s) 889, 1073, 1646, 2275, 2290, 2297, 2348, 2905
MbiI CCGCTC 2 cut(s) 99, 144
MboII GAAGA 8 cut(s) 337, 1786, 2003, 2425, 2846, 2872, 2983, 2986
MhlI GDGCHC 3 cut(s) 356, 495, 2743
MlsI TGGCCA 1 cut(s) 1929
MluCI AATT 5 cut(s) 77, 175, 2056, 2582, 2793
MluI ACGCGT 1 cut(s) 453
MluNI TGGCCA 1 cut(s) 1929
Mly113I GGCGCC 1 cut(s) 2151
MlyI GAGTC 3 cut(s) 473, 2760, 2982
MmeI TCCRAC 2 cut(s) 1121, 2240
Mox20I TGGCCA 1 cut(s) 1929
Mph1103I ATGCAT 1 cut(s) 2455
MroNI GCCGGC 2 cut(s) 54, 2822
MscI TGGCCA 1 cut(s) 1929
MseI TTAA 2 cut(s) 2807, 2897
MslI CAYNNNNRTG 4 cut(s) 185, 1343, 1499, 2313
Msp20I TGGCCA 1 cut(s) 1929
MspA1I CMGCKG 3 cut(s) 2361, 2753, 2924
MspI CCGG 9 cut(s) 55, 88, 121, 203, 589, 819, 1367, 2679, 2823
Mva1269I GAATGC 4 cut(s) 1591, 2310, 2354, 2453
MvnI CGCG 2 cut(s) 455, 2361
NaeI GCCGGC 2 cut(s) 56, 2824
NarI GGCGCC 1 cut(s) 2151
NciI CCSGG 3 cut(s) 121, 122, 1368
NcoI CCATGG 3 cut(s) 533, 993, 1590
NgoMIV GCCGGC 2 cut(s) 54, 2822
NmeAIII GCCGAG 2 cut(s) 306, 1024
NmuCI GTSAC 5 cut(s) 889, 1646, 2275, 2290, 2348
NsiI ATGCAT 1 cut(s) 2455
NspI RCATGY 4 cut(s) 514, 1864, 2466, 3022
NspV TTCGAA 1 cut(s) 1749
OliI CACNNNNGTG 2 cut(s) 1499, 2313
PaeI GCATGC 1 cut(s) 2466
PagI TCATGA 3 cut(s) 108, 1695, 2119
PciI ACATGT 1 cut(s) 3018
PcsI WCGNNNNNNNCGW 2 cut(s) 849, 1755
PctI GAATGC 4 cut(s) 1591, 2310, 2354, 2453
PdiI GCCGGC 2 cut(s) 56, 2824
PfeI GAWTC 8 cut(s) 604, 649, 745, 1063, 1636, 1746, 1967, 2075
Pfl23II CGTACG 1 cut(s) 438
PinAI ACCGGT 1 cut(s) 588
PleI GAGTC 3 cut(s) 473, 2760, 2982
PluTI GGCGCC 1 cut(s) 2154
PmaCI CACGTG 1 cut(s) 1341
PmlI CACGTG 1 cut(s) 1341
PpsI GAGTC 3 cut(s) 473, 2760, 2982
Ppu21I YACGTR 2 cut(s) 1202, 1341
PpuMI RGGWCCY 3 cut(s) 1441, 1513, 2943
PscI ACATGT 1 cut(s) 3018
PshBI ATTAAT 1 cut(s) 2897
Psp124BI GAGCTC 1 cut(s) 356
Psp5II RGGWCCY 3 cut(s) 1441, 1513, 2943
PspCI CACGTG 1 cut(s) 1341
PspEI GGTNACC 1 cut(s) 2297
PspLI CGTACG 1 cut(s) 438
PspOMI GGGCCC 1 cut(s) 491
PspPPI RGGWCCY 3 cut(s) 1441, 1513, 2943
PsrI GAACNNNNNNTAC 2 cut(s) 1148, 1180
PvuII CAGCTG 1 cut(s) 2924
RigI GGCCGGCC 1 cut(s) 58
RsaI GTAC 8 cut(s) 241, 440, 618, 645, 1029, 1261, 1913, 3023
RsaNI GTAC 8 cut(s) 240, 439, 617, 644, 1028, 1260, 1912, 3022
RseI CAYNNNNRTG 4 cut(s) 185, 1343, 1499, 2313
SacI GAGCTC 1 cut(s) 356
SacII CCGCGG 1 cut(s) 2362
SaqAI TTAA 2 cut(s) 2807, 2897
ScaI AGTACT 3 cut(s) 241, 618, 1261
SchI GAGTC 3 cut(s) 473, 2760, 2982
SduI GDGCHC 3 cut(s) 356, 495, 2743
SexAI ACCWGGT 1 cut(s) 2397
SfaNI GCATC 8 cut(s) 14, 180, 453, 652, 1428, 1610, 2170, 2796
SfcI CTRYAG 4 cut(s) 1005, 1225, 1424, 2483
SfoI GGCGCC 1 cut(s) 2152
Sfr303I CCGCGG 1 cut(s) 2362
SfuI TTCGAA 1 cut(s) 1749
SgrBI CCGCGG 1 cut(s) 2362
SinI GGWCC 5 cut(s) 1441, 1513, 1702, 2676, 2943
SmaI CCCGGG 1 cut(s) 122
SmiMI CAYNNNNRTG 4 cut(s) 185, 1343, 1499, 2313
SmlI CTYRAG 3 cut(s) 2061, 2474, 2690
SmoI CTYRAG 3 cut(s) 2061, 2474, 2690
SnaBI TACGTA 1 cut(s) 1202
SphI GCATGC 1 cut(s) 2466
Sse9I AATT 5 cut(s) 77, 175, 2056, 2582, 2793
SspDI GGCGCC 1 cut(s) 2150
SspI AATATT 3 cut(s) 375, 2605, 2895
SspMI CTAG 6 cut(s) 632, 725, 1487, 2015, 2159, 2442
SstI GAGCTC 1 cut(s) 356
StyI CCWWGG 9 cut(s) 228, 533, 993, 1058, 1332, 1590, 1668, 1818, 1898
TaiI ACGT 5 cut(s) 95, 440, 1204, 1343, 2170
TasI AATT 5 cut(s) 77, 175, 2056, 2582, 2793
TatI WGTACW 4 cut(s) 239, 616, 643, 1259
TfiI GAWTC 8 cut(s) 604, 649, 745, 1063, 1636, 1746, 1967, 2075
Tru1I TTAA 2 cut(s) 2807, 2897
Tru9I TTAA 2 cut(s) 2807, 2897
TseFI GTSAC 5 cut(s) 889, 1646, 2275, 2290, 2348
TseI GCWGC 3 cut(s) 796, 2006, 2921
Tsp45I GTSAC 5 cut(s) 889, 1646, 2275, 2290, 2348
TspDTI ATGAA 8 cut(s) 521, 758, 1598, 1684, 2136, 2575, 2872, 3047
TspGWI ACGGA 4 cut(s) 37, 304, 1368, 2518
TspMI CCCGGG 1 cut(s) 120
VpaK11BI GGWCC 5 cut(s) 1441, 1513, 1702, 2676, 2943
VspI ATTAAT 1 cut(s) 2897
XapI RAATTY 3 cut(s) 77, 2056, 2793
XbaI TCTAGA 1 cut(s) 2441
XceI RCATGY 4 cut(s) 514, 1864, 2466, 3022
XcmI CCANNNNNNNNNTGG 3 cut(s) 666, 1588, 2422
XmaI CCCGGG 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 1092
XspI CTAG 6 cut(s) 632, 725, 1487, 2015, 2159, 2442
ZraI GACGTC 1 cut(s) 93
ZrmI AGTACT 3 cut(s) 241, 618, 1261
Zsp2I ATGCAT 1 cut(s) 2455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.