Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000136

Physical Location & Seq

Genomic Coordinates Forward (+)

46051263 .. 46061400

Gene Structure 10138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG366800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGATTAATTATGTCAATAGCAGAAGCTTGGTGGAAGAATTGGTTCAGCAGTCTTACAACTTTTATAATGGGTATAATGACAGTAATGATGAAGCTCCTCTGATTCCTCAGCAAAAACCGACATGTATTGCTTCACTTCAAGCTTTGCAACATCTAAACCTTTCATTCAATCAATTGACTTATGAGATGTCTCCAACACTTGTATCTTCTAAGAAGCTTCTTTTCTTGGACTTGAGTAACAATGATTTGTCTGGTCCTCTTCTGAGCAAGGTTTGCAAAGACGACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005766 GO:0005773 GO:0005775 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009100 GO:0009311 GO:0009313 GO:0009987 GO:0012505 GO:0015923 GO:0016052 GO:0016192 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0034774 GO:0035578 GO:0036211 GO:0036230 GO:0042119 GO:0042582 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:1901135 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

96

Amino Acids

10.79

Weight (kDa)

4.6

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica	MD16G1158000.v1.1
prunus_persica	Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata	RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora	Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa	Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha	Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana	Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	140, 169
AluBI	AGCT	4 cut(s)	27, 95, 143, 217
AluI	AGCT	4 cut(s)	27, 95, 143, 217
Alw26I	GTCTC	1 cut(s)	195
AseI	ATTAAT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	254
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
BbvCI	CCTCAGC	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	122, 254
BseRI	GAGGAG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	121, 255
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	108, 210, 263
BstMAI	GTCTC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	254
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	4 cut(s)	27, 95, 143, 217
CviKI_1	RGCY	4 cut(s)	27, 95, 143, 217
DdeI	CTNAG	3 cut(s)	108, 210, 263
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	254
FaeI	CATG	1 cut(s)	126
FaiI	YATR	5 cut(s)	12, 66, 75, 124, 183
FatI	CATG	1 cut(s)	122
Hin1II	CATG	1 cut(s)	126
HindIII	AAGCTT	3 cut(s)	25, 141, 215
HinfI	GANTC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	102, 264
Hpy99I	CGWCG	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	148, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	3 cut(s)	108, 210, 263
Hsp92II	CATG	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	236
MboII	GAAGA	3 cut(s)	47, 198, 251
MfeI	CAATTG	1 cut(s)	173
MluCI	AATT	3 cut(s)	7, 38, 173
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	3 cut(s)	108, 117, 267
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	1 cut(s)	6
MunI	CAATTG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	273
NlaIII	CATG	1 cut(s)	126
NspI	RCATGY	1 cut(s)	126
PciI	ACATGT	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	103
PscI	ACATGT	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	6
PsiI	TTATAA	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	254
SetI	ASST	6 cut(s)	29, 97, 145, 162, 219, 273
SgeI	CNNG	8 cut(s)	40, 135, 152, 212, 238, 244, 264, 280
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	3 cut(s)	7, 38, 173
TaaI	ACNGT	1 cut(s)	83
TasI	AATT	3 cut(s)	7, 38, 173
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	105, 153
VpaK11BI	GGWCC	1 cut(s)	254
VspI	ATTAAT	1 cut(s)	6
XceI	RCATGY	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.