Rorug04G0061500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000136
Physical Location & Seq
Reverse (-)
9632844 .. 9635638
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0061500.1

Sequence Viewer

Length: 1290 bp
ATGATGCATAATAGTGCTTGTCACAGTCAATCTCTTGACCAAAACGAGCTTTTCTCCCGGAGATGCGTATGGGTGAACGGACCGGTCATCGTCGGCGCCGGTCCATCAGGCCTAGCAGTTGGTGCTGGTCTTAAAGACCAAGGAGTTCCATTCATCATTCTAGAAAGAGCTGACTGCATTGCTTCACTTTGGCAAAAGAGAACATATGACCGCCTCAAGCTTCACCTCCCCAAACAGTTTTGCCAATTACCCAACTTCCCATTCTCAGATGATTTTCCAGAATACCCCTCCAAAAACCACTTCATCAAGTATCTGGAGTCCTATGCACAGCACTTTGACATAAACCCCAATTTCAATGAGACAGTTCAGTCTGCTAAGTACGATGAGACCTTTGGTCTTTGGCGGGTGAAGACCATTGCTGCTGCAAGTGGTTCAGGCTCTGCTGTTGAAATCGACTACATTTGCCGGTGGCTCGTGGTGGCCACTGGAGAGAATTCTGAGAAAGTAGTGCCGGAGTTTGAAGGCTTGGAGGACTTTGGCGGCCATATCATGCATGCTTGTGACTACAGATCCGGCGTGGCTTACCGTGGCAAGAATGTATTAGTTGTTGGATGTGGAAATTCTGGCATGGAAGTCTCTCTTGATCTTTGCAACCACGATGCTAGCCCTTCCATGGTTGTTCGAAGTTCGGTTCATGTTCTGCCAAGGGAAATTCTTGGAAAGTCAACATTTGAATTGGCAATTTTTCTGATGAAGTGGGTACCACTTTGGCTTACTGACAAGATATTGCTGATACTAGCTTGGATATTTCTAGGAAATCTTGAAAAATATGGTATAAAGAGACCATCCACAGGTCCTCTGCAGCTTAAGCACAACTCTGGGAAGACCCCAGTTTTGGACATTGGAGCTCTGCAGAAAATAAGATCTGGTGAAATCAAGGTGGTTCCTGGAATCAAGAGGTTCTCTCATGGCAGAGTCGAGCTTGTTAATGGTCAAAATCTTGTGATTGATTCTGTCATTTTGGCTACTGGGTATCGCAGCAATGTTCCTTCATGGCTCAAGGAAAATGAGTTCTTTTCTGGAGATGGAATCCCCAGAAATCCATTTCCAAATGGGTGGAAAGGGAAAGCTGGGCTTTATGCAGTTGGGTTCACTAGGAGAGGACTATCTGGAGCATCAATGGATGCCATTGGTGTATCCCAGGACATTGCCAAGAGCTGGAAAGAAGAAACAAAGCAGAAAAGGAAATCTGTCGCTGCTCGCCACCGCAGATGTATTTCACATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

47.66

Weight (kDa)

9.07

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_3 PF13738 29 - 230 5.3e-22 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2 PF07992 29 - 227 1.4e-08 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 30 - 350 3.6e-25 Flavin-binding monooxygenase-like
Lys_Orn_oxgnase PF13434 94 - 224 2.6e-11 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 367
Acc65I GGTACC 1 cut(s) 760
AccB1I GGYRCC 2 cut(s) 95, 760
AccB7I CCANNNNNTGG 1 cut(s) 1218
AciI CCGC 4 cut(s) 211, 403, 540, 1267
AclWI GGATC 1 cut(s) 564
AcoI YGGCCR 2 cut(s) 480, 541
AcsI RAATTY 3 cut(s) 493, 619, 711
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 2 cut(s) 380, 762
AfiI CCNNNNNNNGG 4 cut(s) 673, 851, 895, 1218
AflII CTTAAG 1 cut(s) 866
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 5 cut(s) 355, 449, 521, 734, 824
AhdI GACNNNNNGTC 1 cut(s) 393
AjnI CCWGG 2 cut(s) 946, 1200
AjuI GAANNNNNNNTTGG 4 cut(s) 245, 277, 284, 316
AloI GAACNNNNNNTCC 2 cut(s) 1055, 1087
AluBI AGCT 9 cut(s) 49, 170, 220, 800, 865, 908, 982, 1130, 1218
AluI AGCT 9 cut(s) 49, 170, 220, 800, 865, 908, 982, 1130, 1218
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 4 cut(s) 353, 380, 640, 835
AlwI GGATC 1 cut(s) 564
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 3 cut(s) 109, 480, 541
ApeKI GCWGC 5 cut(s) 419, 422, 862, 1038, 1256
ApoI RAATTY 3 cut(s) 493, 619, 711
ArsI GACNNNNNNTTYG 2 cut(s) 877, 909
AsiGI ACCGGT 1 cut(s) 82
Asp718I GGTACC 1 cut(s) 760
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 80, 101, 854
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 4 cut(s) 85, 215, 418, 941
AsuII TTCGAA 1 cut(s) 682
AsuNHI GCTAGC 1 cut(s) 662
AvaII GGWCC 3 cut(s) 80, 101, 854
BalI TGGCCA 1 cut(s) 482
BanI GGYRCC 2 cut(s) 95, 760
BanII GRGCYC 1 cut(s) 910
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 2 cut(s) 416, 890
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 5 cut(s) 406, 409, 874, 1050, 1243
BccI CCATC 3 cut(s) 112, 853, 1079
BciT130I CCWGG 2 cut(s) 948, 1202
BciVI GTATCC 1 cut(s) 1207
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 4 cut(s) 353, 380, 640, 835
BfaI CTAG 6 cut(s) 113, 161, 663, 797, 812, 1155
BfmI CTRYAG 3 cut(s) 565, 860, 911
BfoI RGCGCY 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 866
BfuI GTATCC 1 cut(s) 1207
BglII AGATCT 1 cut(s) 923
BisI GCNGC 6 cut(s) 420, 423, 541, 863, 1039, 1257
BlsI GCNGC 6 cut(s) 421, 424, 542, 864, 1040, 1258
Bme1390I CCNGG 3 cut(s) 58, 948, 1202
Bme18I GGWCC 3 cut(s) 80, 101, 854
BmeRI GACNNNNNGTC 1 cut(s) 393
BmgT120I GGNCC 3 cut(s) 80, 101, 854
BmiI GGNNCC 3 cut(s) 97, 762, 945
BmrFI CCNGG 3 cut(s) 58, 948, 1202
BmrI ACTGGG 2 cut(s) 884, 1038
BmsI GCATC 4 cut(s) 53, 649, 1174, 1184
BmtI GCTAGC 1 cut(s) 666
BmuI ACTGGG 2 cut(s) 884, 1038
BpiI GAAGAC 2 cut(s) 416, 890
BplI GAGNNNNNCTC 4 cut(s) 38, 70, 949, 981
BpmI CTGGAG 4 cut(s) 335, 507, 1101, 1191
Bpu14I TTCGAA 1 cut(s) 682
BpuEI CTTGAG 2 cut(s) 200, 1043
BpuMI CCSGG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 2 cut(s) 380, 835
BsaJI CCNNGG 5 cut(s) 139, 586, 672, 704, 1200
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 4 cut(s) 673, 851, 895, 1218
Bse118I RCCGGY 3 cut(s) 82, 98, 465
Bse1I ACTGG 3 cut(s) 490, 890, 1033
Bse3DI GCAATG 4 cut(s) 177, 414, 1048, 1206
BseBI CCWGG 2 cut(s) 948, 1202
BseDI CCNNGG 5 cut(s) 139, 586, 672, 704, 1200
BseGI GGATG 3 cut(s) 617, 845, 1189
BseLI CCNNNNNNNGG 4 cut(s) 673, 851, 895, 1218
BseMI GCAATG 4 cut(s) 177, 414, 1048, 1206
BseMII CTCAG 2 cut(s) 279, 489
BseNI ACTGG 3 cut(s) 490, 890, 1033
BseXI GCAGC 5 cut(s) 406, 409, 874, 1050, 1243
BseYI CCCAGC 1 cut(s) 1130
BshFI GGCC 3 cut(s) 111, 482, 543
BshNI GGYRCC 2 cut(s) 95, 760
BshTI ACCGGT 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 910
BsiSI CCGG 6 cut(s) 58, 83, 99, 466, 512, 573
BslI CCNNNNNNNGG 4 cut(s) 673, 851, 895, 1218
BsmAI GTCTC 4 cut(s) 353, 380, 640, 835
BsnI GGCC 3 cut(s) 111, 482, 543
Bso31I GGTCTC 2 cut(s) 380, 835
Bsp119I TTCGAA 1 cut(s) 682
Bsp1286I GDGCHC 1 cut(s) 910
Bsp143I GATC 3 cut(s) 569, 643, 923
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 4 cut(s) 211, 403, 540, 1267
BspANI GGCC 3 cut(s) 111, 482, 543
BspCNI CTCAG 2 cut(s) 278, 490
BspLI GGNNCC 3 cut(s) 97, 762, 945
BspMAI CTGCAG 2 cut(s) 864, 915
BspOI GCTAGC 1 cut(s) 666
BspPI GGATC 1 cut(s) 564
BspT104I TTCGAA 1 cut(s) 682
BspT107I GGYRCC 2 cut(s) 95, 760
BspTI CTTAAG 1 cut(s) 866
BspTNI GGTCTC 2 cut(s) 380, 835
BsrDI GCAATG 4 cut(s) 177, 414, 1048, 1206
BsrFI RCCGGY 3 cut(s) 82, 98, 465
BsrI ACTGG 3 cut(s) 490, 890, 1033
BssAI RCCGGY 3 cut(s) 82, 98, 465
BssECI CCNNGG 5 cut(s) 139, 586, 672, 704, 1200
BssMI GATC 3 cut(s) 569, 643, 923
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 3 cut(s) 139, 672, 704
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 948, 1202
Bst4CI ACNGT 4 cut(s) 26, 237, 364, 587
BstACI GRCGYC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 866
BstAPI GCANNNNNTGC 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 555, 664, 1261
BstDEI CTNAG 3 cut(s) 265, 375, 498
BstDSI CCRYGG 2 cut(s) 586, 672
BstF5I GGATG 3 cut(s) 617, 845, 1189
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 3 cut(s) 572, 646, 926
BstMAI GTCTC 4 cut(s) 353, 380, 640, 835
BstMBI GATC 3 cut(s) 569, 643, 923
BstMWI GCNNNNNNNGC 2 cut(s) 122, 868
BstNI CCWGG 2 cut(s) 948, 1202
BstNSI RCATGY 1 cut(s) 557
BstSCI CCNGG 3 cut(s) 56, 946, 1200
BstSFI CTRYAG 3 cut(s) 565, 860, 911
BstV1I GCAGC 5 cut(s) 406, 409, 874, 1050, 1243
BstV2I GAAGAC 2 cut(s) 416, 890
BstX2I RGATCY 2 cut(s) 569, 923
BstXI CCANNNNNNTGG 1 cut(s) 1116
BstYI RGATCY 2 cut(s) 569, 923
BsuI GTATCC 1 cut(s) 1207
BsuRI GGCC 3 cut(s) 111, 482, 543
BtgI CCRYGG 2 cut(s) 586, 672
BtsCI GGATG 3 cut(s) 617, 845, 1189
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 3 cut(s) 555, 664, 1261
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 3 cut(s) 82, 98, 465
Cfr13I GGNCC 3 cut(s) 80, 101, 854
CpoI CGGWCCG 1 cut(s) 80
Csp6I GTAC 2 cut(s) 379, 761
CspAI ACCGGT 1 cut(s) 82
CspI CGGWCCG 1 cut(s) 80
CviAII CATG 7 cut(s) 550, 554, 628, 673, 695, 968, 1053
CviQI GTAC 2 cut(s) 379, 761
DdeI CTNAG 3 cut(s) 265, 375, 498
DinI GGCGCC 1 cut(s) 97
DpnI GATC 3 cut(s) 571, 645, 925
DpnII GATC 3 cut(s) 569, 643, 923
DrdI GACNNNNNNGTC 1 cut(s) 367
DriI GACNNNNNGTC 1 cut(s) 393
DseDI GACNNNNNNGTC 1 cut(s) 367
EaeI YGGCCR 2 cut(s) 480, 541
Eam1105I GACNNNNNGTC 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 908
Eco130I CCWWGG 3 cut(s) 139, 672, 704
Eco147I AGGCCT 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 910
Eco31I GGTCTC 2 cut(s) 380, 835
Eco47I GGWCC 3 cut(s) 80, 101, 854
Eco53kI GAGCTC 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 908
EcoO109I RGGNCCY 1 cut(s) 854
EcoRI GAATTC 1 cut(s) 493
EcoRII CCWGG 2 cut(s) 946, 1200
EcoT14I CCWWGG 3 cut(s) 139, 672, 704
EcoT22I ATGCAT 2 cut(s) 9, 555
EcoT38I GRGCYC 1 cut(s) 910
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 3 cut(s) 139, 672, 704
FaeI CATG 7 cut(s) 553, 557, 631, 676, 698, 971, 1056
FalI AAGNNNNNCTT 4 cut(s) 624, 656, 1119, 1151
FatI CATG 7 cut(s) 549, 553, 627, 672, 694, 967, 1052
FauI CCCGC 1 cut(s) 396
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 6 cut(s) 420, 423, 541, 863, 1039, 1257
FokI GGATG 3 cut(s) 624, 832, 1196
FriOI GRGCYC 1 cut(s) 910
Fsp4HI GCNGC 6 cut(s) 420, 423, 541, 863, 1039, 1257
FspBI CTAG 6 cut(s) 113, 161, 663, 797, 812, 1155
GlaI GCGC 1 cut(s) 97
GluI GCNGC 6 cut(s) 420, 423, 541, 863, 1039, 1257
GsaI CCCAGC 1 cut(s) 1134
GsuI CTGGAG 4 cut(s) 335, 507, 1101, 1191
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 3 cut(s) 111, 482, 543
HapII CCGG 6 cut(s) 58, 83, 99, 466, 512, 573
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 7 cut(s) 553, 557, 631, 676, 698, 971, 1056
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 5 cut(s) 317, 951, 975, 1010, 1089
HpaII CCGG 6 cut(s) 58, 83, 99, 466, 512, 573
HphI GGTGA 4 cut(s) 85, 215, 418, 941
Hpy166II GTNNAC 3 cut(s) 76, 726, 1152
Hpy188I TCNGA 3 cut(s) 268, 499, 750
Hpy188III TCNNGA 9 cut(s) 35, 161, 278, 314, 641, 821, 955, 1080, 1170
Hpy8I GTNNAC 3 cut(s) 76, 726, 1152
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 515, 678, 1059
HpyCH4III ACNGT 4 cut(s) 26, 237, 364, 587
HpyCH4V TGCA 9 cut(s) 7, 177, 326, 425, 553, 651, 862, 913, 1142
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 868
HpyF3I CTNAG 3 cut(s) 265, 375, 498
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 7 cut(s) 553, 557, 631, 676, 698, 971, 1056
HspAI GCGC 1 cut(s) 96
KasI GGCGCC 1 cut(s) 95
KpnI GGTACC 1 cut(s) 764
Kzo9I GATC 3 cut(s) 569, 643, 923
LmnI GCTCC 2 cut(s) 905, 1172
Lsp1109I GCAGC 5 cut(s) 406, 409, 874, 1050, 1243
LweI GCATC 4 cut(s) 53, 649, 1174, 1184
MaeI CTAG 6 cut(s) 113, 161, 663, 797, 812, 1155
MaeIII GTNAC 2 cut(s) 20, 560
MalI GATC 3 cut(s) 571, 645, 925
MboI GATC 3 cut(s) 569, 643, 923
MboII GAAGA 3 cut(s) 421, 895, 1238
MflI RGATCY 2 cut(s) 569, 923
MhlI GDGCHC 1 cut(s) 910
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 7 cut(s) 245, 349, 493, 619, 711, 734, 741
MluNI TGGCCA 1 cut(s) 482
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 2 cut(s) 326, 984
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 7 cut(s) 224, 236, 298, 523, 867, 951, 1154
Mox20I TGGCCA 1 cut(s) 482
Mph1103I ATGCAT 2 cut(s) 9, 555
MscI TGGCCA 1 cut(s) 482
MseI TTAA 3 cut(s) 132, 867, 987
MslI CAYNNNNRTG 2 cut(s) 12, 558
Msp20I TGGCCA 1 cut(s) 482
MspCI CTTAAG 1 cut(s) 866
MspI CCGG 6 cut(s) 58, 83, 99, 466, 512, 573
MspR9I CCNGG 3 cut(s) 58, 948, 1202
MvaI CCWGG 2 cut(s) 948, 1202
MwoI GCNNNNNNNGC 2 cut(s) 122, 868
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 1 cut(s) 58
NcoI CCATGG 1 cut(s) 672
NdeI CATATG 1 cut(s) 205
NdeII GATC 3 cut(s) 569, 643, 923
NheI GCTAGC 1 cut(s) 662
NlaIII CATG 7 cut(s) 553, 557, 631, 676, 698, 971, 1056
NlaIV GGNNCC 3 cut(s) 97, 762, 945
NmuCI GTSAC 2 cut(s) 20, 560
NsiI ATGCAT 2 cut(s) 9, 555
NspI RCATGY 1 cut(s) 557
NspV TTCGAA 1 cut(s) 682
PaeI GCATGC 1 cut(s) 557
PceI AGGCCT 1 cut(s) 111
PfeI GAWTC 3 cut(s) 951, 1010, 1089
PflMI CCANNNNNTGG 1 cut(s) 1218
PfoI TCCNGGA 2 cut(s) 56, 946
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 6 cut(s) 421, 424, 542, 864, 1040, 1258
PleI GAGTC 2 cut(s) 325, 983
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 2 cut(s) 325, 983
PpuMI RGGWCCY 1 cut(s) 854
Psp124BI GAGCTC 1 cut(s) 910
Psp5II RGGWCCY 1 cut(s) 854
Psp6I CCWGG 2 cut(s) 946, 1200
PspFI CCCAGC 1 cut(s) 1130
PspGI CCWGG 2 cut(s) 946, 1200
PspN4I GGNNCC 3 cut(s) 97, 762, 945
PspPI GGNCC 3 cut(s) 80, 101, 854
PspPPI RGGWCCY 1 cut(s) 854
PstI CTGCAG 2 cut(s) 864, 915
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 2 cut(s) 569, 923
RsaI GTAC 2 cut(s) 380, 762
RsaNI GTAC 2 cut(s) 379, 761
RseI CAYNNNNRTG 2 cut(s) 12, 558
Rsr2I CGGWCCG 1 cut(s) 80
RsrII CGGWCCG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 910
SaqAI TTAA 3 cut(s) 132, 867, 987
SatI GCNGC 6 cut(s) 420, 423, 541, 863, 1039, 1257
Sau3AI GATC 3 cut(s) 569, 643, 923
Sau96I GGNCC 3 cut(s) 80, 101, 854
SchI GAGTC 2 cut(s) 326, 984
ScrFI CCNGG 3 cut(s) 58, 948, 1202
SduI GDGCHC 1 cut(s) 910
SfaNI GCATC 4 cut(s) 53, 649, 1174, 1184
SfcI CTRYAG 3 cut(s) 565, 860, 911
SfoI GGCGCC 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 682
SinI GGWCC 3 cut(s) 80, 101, 854
SmiMI CAYNNNNRTG 2 cut(s) 12, 558
SmlI CTYRAG 3 cut(s) 215, 866, 1058
SmoI CTYRAG 3 cut(s) 215, 866, 1058
SphI GCATGC 1 cut(s) 557
Sse9I AATT 7 cut(s) 245, 349, 493, 619, 711, 734, 741
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 4 cut(s) 211, 403, 540, 1267
SspDI GGCGCC 1 cut(s) 95
SspMI CTAG 6 cut(s) 113, 161, 663, 797, 812, 1155
SstI GAGCTC 1 cut(s) 910
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 56, 946, 1200
StyI CCWWGG 3 cut(s) 139, 672, 704
TaaI ACNGT 4 cut(s) 26, 237, 364, 587
TaqI TCGA 3 cut(s) 453, 682, 978
TasI AATT 7 cut(s) 245, 349, 493, 619, 711, 734, 741
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 3 cut(s) 951, 1010, 1089
Tru1I TTAA 3 cut(s) 132, 867, 987
Tru9I TTAA 3 cut(s) 132, 867, 987
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 2 cut(s) 20, 560
TseI GCWGC 5 cut(s) 419, 422, 862, 1038, 1256
Tsp45I GTSAC 2 cut(s) 20, 560
TspDTI ATGAA 5 cut(s) 142, 292, 683, 767, 1041
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 490
Van91I CCANNNNNTGG 1 cut(s) 1218
Vha464I CTTAAG 1 cut(s) 866
VpaK11BI GGWCC 3 cut(s) 80, 101, 854
XapI RAATTY 3 cut(s) 493, 619, 711
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 1 cut(s) 557
XspI CTAG 6 cut(s) 113, 161, 663, 797, 812, 1155
Zsp2I ATGCAT 2 cut(s) 9, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.