Rorug05G0367700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000136
Physical Location & Seq
Forward (+)
49162911 .. 49163719
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0367700.1

Sequence Viewer

Length: 594 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

197

Amino Acids

21.81

Weight (kDa)

5.22

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 3.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 1 cut(s) 528
AclWI GGATC 4 cut(s) 141, 327, 340, 550
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 1 cut(s) 425
AhlI ACTAGT 2 cut(s) 314, 359
AjnI CCWGG 2 cut(s) 92, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 562, 584
AluI AGCT 4 cut(s) 53, 199, 562, 584
Alw21I GWGCWC 3 cut(s) 450, 502, 564
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 2 cut(s) 446, 498
AlwI GGATC 4 cut(s) 141, 327, 340, 550
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 578
ApaLI GTGCAC 2 cut(s) 446, 498
ApeKI GCWGC 3 cut(s) 50, 293, 584
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 354
BaeGI GKGCMC 4 cut(s) 164, 306, 450, 502
BamHI GGATCC 1 cut(s) 332
BanII GRGCYC 2 cut(s) 262, 564
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 3 cut(s) 450, 502, 564
BbvI GCAGC 3 cut(s) 62, 280, 571
BccI CCATC 2 cut(s) 368, 583
BceAI ACGGC 2 cut(s) 72, 466
BciT130I CCWGG 2 cut(s) 94, 416
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 359
BfaI CTAG 3 cut(s) 315, 360, 592
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 585
BlpI GCTNAGC 1 cut(s) 563
BlsI GCNGC 3 cut(s) 52, 295, 586
Bme1390I CCNGG 2 cut(s) 94, 416
Bme18I GGWCC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 4 cut(s) 6, 245, 334, 355
BmrFI CCNGG 2 cut(s) 94, 416
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 4 cut(s) 93, 179, 282, 531
Bpu10I CCTNAGC 1 cut(s) 523
Bpu1102I GCTNAGC 1 cut(s) 563
BpuEI CTTGAG 2 cut(s) 113, 578
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 486, 538
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 3 cut(s) 205, 299, 548
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 2 cut(s) 94, 416
BseDI CCNNGG 2 cut(s) 486, 538
BseGI GGATG 2 cut(s) 386, 575
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 2 cut(s) 537, 577
BseNI ACTGG 3 cut(s) 205, 299, 548
BseRI GAGGAG 3 cut(s) 44, 417, 420
BseSI GKGCMC 4 cut(s) 164, 306, 450, 502
BseXI GCAGC 3 cut(s) 62, 280, 571
BsiHKAI GWGCWC 3 cut(s) 450, 502, 564
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 262, 306, 450, 502, 564
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 5 cut(s) 133, 186, 332, 409, 542
Bsp1720I GCTNAGC 1 cut(s) 563
BspACI CCGC 1 cut(s) 528
BspCNI CTCAG 2 cut(s) 536, 576
BspEI TCCGGA 1 cut(s) 578
BspLI GGNNCC 4 cut(s) 6, 245, 334, 355
BspPI GGATC 4 cut(s) 141, 327, 340, 550
BsrI ACTGG 3 cut(s) 205, 299, 548
BssECI CCNNGG 2 cut(s) 486, 538
BssMI GATC 5 cut(s) 133, 186, 332, 409, 542
BssNI GRCGYC 1 cut(s) 459
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 416
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 523, 563
BstDSI CCRYGG 1 cut(s) 538
BstEII GGTNACC 1 cut(s) 467
BstF5I GGATG 2 cut(s) 386, 575
BstKTI GATC 5 cut(s) 136, 189, 335, 412, 545
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 5 cut(s) 133, 186, 332, 409, 542
BstNI CCWGG 2 cut(s) 94, 416
BstPI GGTNACC 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 92, 414
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 4 cut(s) 164, 306, 450, 502
BstV1I GCAGC 3 cut(s) 62, 280, 571
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 4 cut(s) 133, 186, 332, 542
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 4 cut(s) 133, 186, 332, 542
BtgI CCRYGG 1 cut(s) 538
BtsCI GGATG 2 cut(s) 386, 575
BtsIMutI CAGTG 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 354
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 1 cut(s) 90
CviAII CATG 3 cut(s) 70, 307, 503
CviJI RGCY 9 cut(s) 53, 87, 199, 260, 293, 522, 562, 567, 584
CviKI_1 RGCY 9 cut(s) 53, 87, 199, 260, 293, 522, 562, 567, 584
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 523, 563
DpnI GATC 5 cut(s) 135, 188, 334, 411, 544
DpnII GATC 5 cut(s) 133, 186, 332, 409, 542
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 562
Eco24I GRGCYC 2 cut(s) 262, 564
Eco47I GGWCC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 467
EcoICRI GAGCTC 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 92, 414
EcoT38I GRGCYC 2 cut(s) 262, 564
FaeI CATG 3 cut(s) 73, 310, 506
FaiI YATR 6 cut(s) 71, 144, 210, 216, 308, 504
FatI CATG 3 cut(s) 69, 306, 502
Fnu4HI GCNGC 3 cut(s) 51, 294, 585
FokI GGATG 2 cut(s) 373, 562
FriOI GRGCYC 2 cut(s) 262, 564
Fsp4HI GCNGC 3 cut(s) 51, 294, 585
FspBI CTAG 3 cut(s) 315, 360, 592
GluI GCNGC 3 cut(s) 51, 294, 585
GsuI CTGGAG 4 cut(s) 93, 179, 282, 531
HapII CCGG 1 cut(s) 579
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 3 cut(s) 73, 310, 506
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 1 cut(s) 579
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 357, 448, 500
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 557, 579
Hpy8I GTNNAC 3 cut(s) 357, 448, 500
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 2 cut(s) 252, 459
HpyCH4V TGCA 3 cut(s) 394, 448, 500
HpyF3I CTNAG 2 cut(s) 523, 563
HpySE526I ACGT 2 cut(s) 252, 459
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 3 cut(s) 73, 310, 506
Kpn2I TCCGGA 1 cut(s) 578
Kzo9I GATC 5 cut(s) 133, 186, 332, 409, 542
LmnI GCTCC 2 cut(s) 301, 581
Lsp1109I GCAGC 3 cut(s) 62, 280, 571
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 360, 592
MaeII ACGT 2 cut(s) 252, 459
MaeIII GTNAC 2 cut(s) 467, 530
MalI GATC 5 cut(s) 135, 188, 334, 411, 544
MboI GATC 5 cut(s) 133, 186, 332, 409, 542
MboII GAAGA 2 cut(s) 422, 487
MflI RGATCY 4 cut(s) 133, 186, 332, 542
MhlI GDGCHC 6 cut(s) 164, 262, 306, 450, 502, 564
MluCI AATT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 578
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 2 cut(s) 94, 416
MvaI CCWGG 2 cut(s) 94, 416
NdeII GATC 5 cut(s) 133, 186, 332, 409, 542
NlaIII CATG 3 cut(s) 73, 310, 506
NlaIV GGNNCC 4 cut(s) 6, 245, 334, 355
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 3 cut(s) 52, 295, 586
Psp124BI GAGCTC 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 92, 414
PspEI GGTNACC 1 cut(s) 467
PspGI CCWGG 2 cut(s) 92, 414
PspN4I GGNNCC 4 cut(s) 6, 245, 334, 355
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 4 cut(s) 133, 186, 332, 542
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 585
Sau3AI GATC 5 cut(s) 133, 186, 332, 409, 542
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 94, 416
SduI GDGCHC 6 cut(s) 164, 262, 306, 450, 502, 564
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 557
SmoI CTYRAG 3 cut(s) 128, 261, 557
SpeI ACTAGT 2 cut(s) 314, 359
Sse9I AATT 1 cut(s) 346
SsiI CCGC 1 cut(s) 528
SspMI CTAG 3 cut(s) 315, 360, 592
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 92, 414
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 2 cut(s) 255, 462
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 346
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 306
TseI GCWGC 3 cut(s) 50, 293, 584
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 306
VneI GTGCAC 2 cut(s) 446, 498
VpaK11BI GGWCC 1 cut(s) 354
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 3 cut(s) 315, 360, 592
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.