Rh4BG189800

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000136
Physical Location & Seq
Reverse (-)
32964285 .. 32966220
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG189800.1

Sequence Viewer

Length: 786 bp
ATGGAAGATTGGGGGACTGGAAAAATAATACATATTGAATTTGGTGCTAATTGGATGCCTATTAATGAAGATGGAAAGAAGTTTAGTTCCCAACTTGGAATCTTGGCTCGAGATGGGCAGAAGGTTCCTCTAACATATACTTCATGGAGTGGCATGCCGCCTGATGTATTAAATGCCATTTGGAAAGATGTCAAGGACAACACCGATGTCCCAGATGAATATAAACATAGTTGCTTGAAGGTGGTTGGTAATAGATGGAGGGATTGGAAGAGTCGAGTTAAGACACAATGGTATGATAAATATGAAACTGATGAGGAACGACTAGCAATCACGCCTAATCAAGTTGTTAGAGATCAATGGATACTATTAGTAAAGTATTGGGGTCTTCCGGATGTAAAGGAGCTGTGTGAGACAAATAAACTTAGCCGTGCACAAGGAGGAGCCCCTCATAGAACTGGTCGAAAATCTTTTGCTAGAATACGGAAAGAGATGATGGACAGAGGAGAGAAAACTGATCGCCTGACCATGTTTATGAAAACACGTGCAAAGAAAACAAAGAATAATGAAGGCCAACAAGTTGAGACTTTTGATGAGGAGGCTGCTGCTATTATAAGTCAATTCAATGATTATTTGGAGGAGAGGCCTGAAGATGAAGAAGATGATTCATTTAGAGAGGAGGTATTTACTAAAGTGATGGGAGAAGATACACATGGACGTGTCCGCATGTACGGGACAGGAGTGACTCCATCTCAAGTATTTGGTCAACCTTCAACAACGTACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

261

Amino Acids

30.38

Weight (kDa)

5.75

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 118 - 249 7.4e-27 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 2 cut(s) 158, 721
AcsI RAATTY 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 666
AcvI CACGTG 1 cut(s) 542
AfaI GTAC 2 cut(s) 728, 779
AflIII ACRYGT 2 cut(s) 539, 715
AgsI TTSAA 4 cut(s) 38, 238, 622, 771
AjiI CACGTC 1 cut(s) 716
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 2 cut(s) 404, 575
Alw44I GTGCAC 1 cut(s) 429
Ama87I CYCGRG 1 cut(s) 108
Aor13HI TCCGGA 1 cut(s) 388
AoxI GGCC 2 cut(s) 568, 641
ApaLI GTGCAC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 599, 602
ApoI RAATTY 1 cut(s) 38
AseI ATTAAT 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 108
BaeGI GKGCMC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 445
BbrPI CACGTG 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 2 cut(s) 586, 589
BccI CCATC 6 cut(s) 65, 107, 249, 487, 688, 754
BceAI ACGGC 1 cut(s) 411
BciVI GTATCC 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 404, 575
BfaI CTAG 2 cut(s) 323, 474
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 3 cut(s) 158, 600, 603
BlsI GCNGC 3 cut(s) 159, 601, 604
BmeT110I CYCGRG 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 716
BmiI GGNNCC 2 cut(s) 126, 442
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 735
BsaAI YACGTR 1 cut(s) 542
BsaWI WCCGGW 1 cut(s) 388
Bse1I ACTGG 2 cut(s) 22, 460
BseAI TCCGGA 1 cut(s) 388
BseGI GGATG 2 cut(s) 60, 397
BseNI ACTGG 2 cut(s) 22, 460
BseRI GAGGAG 5 cut(s) 453, 516, 608, 650, 689
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 2 cut(s) 586, 589
BshFI GGCC 2 cut(s) 570, 643
BsiHKAI GWGCWC 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 108
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 3 cut(s) 28, 194, 745
BsmAI GTCTC 2 cut(s) 404, 575
BsmFI GGGAC 3 cut(s) 28, 194, 745
BsnI GGCC 2 cut(s) 570, 643
BsoBI CYCGRG 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 433, 445
Bsp13I TCCGGA 1 cut(s) 388
Bsp143I GATC 2 cut(s) 352, 514
BspACI CCGC 2 cut(s) 158, 721
BspANI GGCC 2 cut(s) 570, 643
BspEI TCCGGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 126, 442
BsrI ACTGG 2 cut(s) 22, 460
BssMI GATC 2 cut(s) 352, 514
Bst6I CTCTTC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 60, 397
BstKTI GATC 2 cut(s) 355, 517
BstMAI GTCTC 2 cut(s) 404, 575
BstMBI GATC 2 cut(s) 352, 514
BstNSI RCATGY 2 cut(s) 157, 727
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 586, 589
BstV2I GAAGAC 1 cut(s) 377
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 2 cut(s) 570, 643
BtrI CACGTC 1 cut(s) 716
BtsCI GGATG 2 cut(s) 60, 397
Cac8I GCNNGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 727, 778
CviAII CATG 5 cut(s) 144, 154, 526, 710, 724
CviJI RGCY 7 cut(s) 107, 403, 426, 443, 570, 599, 643
CviKI_1 RGCY 7 cut(s) 107, 403, 426, 443, 570, 599, 643
CviQI GTAC 2 cut(s) 727, 778
DdeI CTNAG 1 cut(s) 422
DpnI GATC 2 cut(s) 354, 516
DpnII GATC 2 cut(s) 352, 514
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco147I AGGCCT 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 666
Eco72I CACGTG 1 cut(s) 542
Eco88I CYCGRG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 445
FaeI CATG 5 cut(s) 147, 157, 529, 713, 727
FaqI GGGAC 3 cut(s) 28, 194, 745
FatI CATG 5 cut(s) 143, 153, 525, 709, 723
Fnu4HI GCNGC 3 cut(s) 158, 600, 603
FokI GGATG 2 cut(s) 67, 404
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 3 cut(s) 158, 600, 603
FspBI CTAG 2 cut(s) 323, 474
GluI GCNGC 3 cut(s) 158, 600, 603
HaeIII GGCC 2 cut(s) 570, 643
HapII CCGG 1 cut(s) 389
Hin1II CATG 5 cut(s) 147, 157, 529, 713, 727
HincII GTYRAC 1 cut(s) 764
HindII GTYRAC 1 cut(s) 764
HinfI GANTC 4 cut(s) 99, 271, 662, 742
HpaII CCGG 1 cut(s) 389
Hpy166II GTNNAC 2 cut(s) 431, 764
Hpy188I TCNGA 1 cut(s) 785
Hpy188III TCNNGA 2 cut(s) 110, 389
Hpy8I GTNNAC 2 cut(s) 431, 764
HpyAV CCTTC 4 cut(s) 115, 232, 560, 777
HpyCH4IV ACGT 3 cut(s) 541, 715, 776
HpyCH4V TGCA 2 cut(s) 431, 545
HpyF3I CTNAG 1 cut(s) 422
HpySE526I ACGT 3 cut(s) 541, 715, 776
Hsp92II CATG 5 cut(s) 147, 157, 529, 713, 727
Kpn2I TCCGGA 1 cut(s) 388
Kzo9I GATC 2 cut(s) 352, 514
LmnI GCTCC 2 cut(s) 400, 440
LpnPI CCDG 8 cut(s) 3, 174, 225, 402, 441, 533, 657, 720
Lsp1109I GCAGC 2 cut(s) 586, 589
LweI GCATC 1 cut(s) 45
MaeI CTAG 2 cut(s) 323, 474
MaeII ACGT 3 cut(s) 541, 715, 776
MaeIII GTNAC 1 cut(s) 739
MalI GATC 2 cut(s) 354, 516
MboI GATC 2 cut(s) 352, 514
MboII GAAGA 8 cut(s) 17, 80, 280, 377, 659, 665, 668, 713
MhlI GDGCHC 2 cut(s) 433, 445
MluCI AATT 3 cut(s) 38, 49, 617
MlyI GAGTC 2 cut(s) 280, 736
MroI TCCGGA 1 cut(s) 388
MseI TTAA 3 cut(s) 63, 170, 279
MslI CAYNNNNRTG 2 cut(s) 530, 714
MspI CCGG 1 cut(s) 389
NdeII GATC 2 cut(s) 352, 514
NlaIII CATG 5 cut(s) 147, 157, 529, 713, 727
NlaIV GGNNCC 2 cut(s) 126, 442
NmuCI GTSAC 1 cut(s) 739
NspI RCATGY 2 cut(s) 157, 727
PaeI GCATGC 1 cut(s) 157
PaeR7I CTCGAG 1 cut(s) 108
PceI AGGCCT 1 cut(s) 643
PfeI GAWTC 2 cut(s) 99, 662
PkrI GCNGC 3 cut(s) 159, 601, 604
PleI GAGTC 2 cut(s) 279, 736
PmaCI CACGTG 1 cut(s) 542
PmlI CACGTG 1 cut(s) 542
PpsI GAGTC 2 cut(s) 279, 736
Ppu21I YACGTR 1 cut(s) 542
PshBI ATTAAT 1 cut(s) 63
PsiI TTATAA 1 cut(s) 611
PspCI CACGTG 1 cut(s) 542
PspN4I GGNNCC 2 cut(s) 126, 442
RsaI GTAC 2 cut(s) 728, 779
RsaNI GTAC 2 cut(s) 727, 778
RseI CAYNNNNRTG 2 cut(s) 530, 714
SaqAI TTAA 3 cut(s) 63, 170, 279
SatI GCNGC 3 cut(s) 158, 600, 603
Sau3AI GATC 2 cut(s) 352, 514
SchI GAGTC 2 cut(s) 280, 736
SduI GDGCHC 2 cut(s) 433, 445
SetI ASST 8 cut(s) 126, 243, 405, 544, 681, 718, 769, 779
SfaNI GCATC 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 108
SlaI CTCGAG 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 530, 714
SmlI CTYRAG 2 cut(s) 108, 750
SmoI CTYRAG 2 cut(s) 108, 750
SphI GCATGC 1 cut(s) 157
Sse9I AATT 3 cut(s) 38, 49, 617
SseBI AGGCCT 1 cut(s) 643
SsiI CCGC 2 cut(s) 158, 721
SspMI CTAG 2 cut(s) 323, 474
StuI AGGCCT 1 cut(s) 643
TaiI ACGT 3 cut(s) 544, 718, 779
TaqI TCGA 3 cut(s) 109, 274, 460
TasI AATT 3 cut(s) 38, 49, 617
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 2 cut(s) 99, 662
Tru1I TTAA 3 cut(s) 63, 170, 279
Tru9I TTAA 3 cut(s) 63, 170, 279
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 2 cut(s) 599, 602
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 8 cut(s) 81, 132, 231, 318, 548, 579, 654, 666
TspGWI ACGGA 1 cut(s) 496
VneI GTGCAC 1 cut(s) 429
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 1 cut(s) 38
XceI RCATGY 2 cut(s) 157, 727
XhoI CTCGAG 1 cut(s) 108
XspI CTAG 2 cut(s) 323, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.