FvH4_1g28940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000136
Physical Location & Seq
Reverse (-)
21393875 .. 21397834
3960 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28940.t1

Sequence Viewer

Length: 819 bp
ATGACGATGCTGGAATTGATGCAGGAAGTGGCGCACTTCTTTAGAACAAAGACAAATTTGGTTGATGTTCCAGAAGGATACAAACCTGTGTGTCTCAAAAGTTGCAATTATCTTTGGAAGGATCATAAAAGCAAAACCAAATCTAACTACTTTGTACCAAACAAAAGCAATCCAGAGCTGAGTTCTATGGTTCCTCCAAATATTATAGCAGATCAATGGACTGTGCTTGTTGCCTATTGGAACACTAAGGATGCAAAGGCAATAGCGACCCGTAATTCAATCAATCAAGAGACACGTGGACCATCTCATAATATTGGTAGAAAGAATTTTGCTCAATTAAGATATGAGATGGAACAAAGTGGAGAAGAATCTGATAAATTTAGTGTGTGGAAAAAAGCACGTAAAGAATCCAATCCAGAAGTTGCCCAAGTCATTAATGAATACAACAGGAAACTGTTACTGGTGAGACCGGTGGAAGACCAAAAGCTCACAGCTGTAAAAGACCGTGTTTTTCATGATGTTATTGGAGAGGATGGTCATGCCAAAATCACTGAAGAGGTAACAGAGAAACTGAAAGAGTCTTTCGATAAGAAATTGGAGGATGCTATTAAAATGCTTCAAGCTCAAATTGCCAATAATATGGATTGCACAACTGCACAGGGGGGAAGAAACACAATTGCACATGGACTGGTACCAGCTGATGCAACAAGTGGCCATGAGGCTAGGAGGGAGTCCATAGGAGAGGGAGATCCTGAGGCCACTGCCCATTTTGATTCAGCTTCTGATGATGTCGCTGGTCACCATGATCCTCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

273

Amino Acids

30.59

Weight (kDa)

6.08

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 71 - 180 8.1e-14 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 691
AccB1I GGYRCC 1 cut(s) 691
AclWI GGATC 3 cut(s) 129, 743, 800
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 3 cut(s) 55, 325, 377
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 296
AfaI GTAC 2 cut(s) 156, 693
AflIII ACRYGT 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 469
AgsI TTSAA 2 cut(s) 279, 620
AluBI AGCT 6 cut(s) 178, 487, 494, 623, 698, 779
AluI AGCT 6 cut(s) 178, 487, 494, 623, 698, 779
Alw26I GTCTC 3 cut(s) 98, 284, 460
AlwI GGATC 3 cut(s) 129, 743, 800
AlwNI CAGNNNCTG 1 cut(s) 782
AoxI GGCC 2 cut(s) 712, 756
ApoI RAATTY 3 cut(s) 55, 325, 377
AseI ATTAAT 1 cut(s) 435
AsiGI ACCGGT 1 cut(s) 469
Asp718I GGTACC 1 cut(s) 691
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 475, 791
AvaII GGWCC 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 753
BalI TGGCCA 1 cut(s) 714
BanI GGYRCC 1 cut(s) 691
BbrPI CACGTG 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 483
BccI CCATC 3 cut(s) 310, 343, 527
BciVI GTATCC 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 98, 284, 460
BfaI CTAG 1 cut(s) 723
BfuI GTATCC 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 192, 693
BmsI GCATC 4 cut(s) 9, 241, 592, 691
BpiI GAAGAC 1 cut(s) 483
BsaAI YACGTR 2 cut(s) 296, 401
BsaI GGTCTC 1 cut(s) 460
BsaWI WCCGGW 1 cut(s) 469
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 2 cut(s) 465, 693
Bse21I CCTNAGG 1 cut(s) 753
BseGI GGATG 3 cut(s) 256, 538, 607
BseMII CTCAG 2 cut(s) 170, 744
BseNI ACTGG 2 cut(s) 465, 693
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 2 cut(s) 714, 758
BshNI GGYRCC 1 cut(s) 691
BshTI ACCGGT 1 cut(s) 469
BsiSI CCGG 1 cut(s) 470
BsmAI GTCTC 3 cut(s) 98, 284, 460
BsnI GGCC 2 cut(s) 714, 758
Bso31I GGTCTC 1 cut(s) 460
Bsp143I GATC 4 cut(s) 121, 211, 748, 805
BspANI GGCC 2 cut(s) 714, 758
BspCNI CTCAG 2 cut(s) 171, 745
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 2 cut(s) 192, 693
BspPI GGATC 3 cut(s) 129, 743, 800
BspT107I GGYRCC 1 cut(s) 691
BspTNI GGTCTC 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 2 cut(s) 465, 693
BssAI RCCGGY 1 cut(s) 469
BssMI GATC 4 cut(s) 121, 211, 748, 805
Bst4CI ACNGT 3 cut(s) 223, 456, 506
Bst6I CTCTTC 1 cut(s) 549
BstBAI YACGTR 2 cut(s) 296, 401
BstDEI CTNAG 3 cut(s) 179, 246, 753
BstEII GGTNACC 1 cut(s) 797
BstF5I GGATG 3 cut(s) 256, 538, 607
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 4 cut(s) 124, 214, 751, 808
BstMAI GTCTC 3 cut(s) 98, 284, 460
BstMBI GATC 4 cut(s) 121, 211, 748, 805
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstPI GGTNACC 1 cut(s) 797
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 1 cut(s) 748
Bsu36I CCTNAGG 1 cut(s) 753
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 714, 758
BtsCI GGATG 3 cut(s) 256, 538, 607
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 2 cut(s) 549, 759
CaiI CAGNNNCTG 1 cut(s) 782
CciI TCATGA 1 cut(s) 514
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 155, 692
CspAI ACCGGT 1 cut(s) 469
CviAII CATG 6 cut(s) 515, 539, 683, 716, 803, 816
CviJI RGCY 9 cut(s) 178, 487, 494, 623, 698, 714, 722, 758, 779
CviKI_1 RGCY 9 cut(s) 178, 487, 494, 623, 698, 714, 722, 758, 779
CviQI GTAC 2 cut(s) 155, 692
DdeI CTNAG 3 cut(s) 179, 246, 753
DpnI GATC 4 cut(s) 123, 213, 750, 807
DpnII GATC 4 cut(s) 121, 211, 748, 805
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco31I GGTCTC 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 753
Eco91I GGTNACC 1 cut(s) 797
EcoO65I GGTNACC 1 cut(s) 797
FaeI CATG 6 cut(s) 518, 542, 686, 719, 806, 819
FatI CATG 6 cut(s) 514, 538, 682, 715, 802, 815
FokI GGATG 3 cut(s) 263, 545, 614
FspBI CTAG 1 cut(s) 723
GlaI GCGC 1 cut(s) 33
HaeIII GGCC 2 cut(s) 714, 758
HapII CCGG 1 cut(s) 470
HhaI GCGC 1 cut(s) 34
Hin1II CATG 6 cut(s) 518, 542, 686, 719, 806, 819
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 5 cut(s) 368, 407, 578, 731, 773
HpaII CCGG 1 cut(s) 470
HphI GGTGA 2 cut(s) 475, 791
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 373, 784
Hpy188III TCNNGA 6 cut(s) 71, 173, 287, 416, 515, 752
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 68, 112
HpyCH4III ACNGT 3 cut(s) 223, 456, 506
HpyCH4IV ACGT 2 cut(s) 295, 400
HpyCH4V TGCA 8 cut(s) 22, 105, 254, 648, 656, 680, 704, 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 3 cut(s) 179, 246, 753
HpySE526I ACGT 2 cut(s) 295, 400
Hsp92II CATG 6 cut(s) 518, 542, 686, 719, 806, 819
HspAI GCGC 1 cut(s) 32
KpnI GGTACC 1 cut(s) 695
Kzo9I GATC 4 cut(s) 121, 211, 748, 805
LweI GCATC 4 cut(s) 9, 241, 592, 691
MaeI CTAG 1 cut(s) 723
MaeII ACGT 2 cut(s) 295, 400
MaeIII GTNAC 3 cut(s) 456, 559, 797
MalI GATC 4 cut(s) 123, 213, 750, 807
MboI GATC 4 cut(s) 121, 211, 748, 805
MboII GAAGA 4 cut(s) 377, 488, 566, 678
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 1 cut(s) 748
MlsI TGGCCA 1 cut(s) 714
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 2 cut(s) 587, 740
MnlI CCTC 9 cut(s) 204, 523, 550, 592, 712, 720, 736, 748, 819
Mox20I TGGCCA 1 cut(s) 714
MscI TGGCCA 1 cut(s) 714
MseI TTAA 3 cut(s) 338, 435, 609
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 494, 698
MspI CCGG 1 cut(s) 470
MunI CAATTG 1 cut(s) 675
MwoI GCNNNNNNNGC 1 cut(s) 629
NdeII GATC 4 cut(s) 121, 211, 748, 805
NlaIII CATG 6 cut(s) 518, 542, 686, 719, 806, 819
NlaIV GGNNCC 2 cut(s) 192, 693
NmuCI GTSAC 1 cut(s) 797
PagI TCATGA 1 cut(s) 514
PfeI GAWTC 3 cut(s) 368, 407, 773
PinAI ACCGGT 1 cut(s) 469
PleI GAGTC 2 cut(s) 586, 739
PmaCI CACGTG 1 cut(s) 296
PmlI CACGTG 1 cut(s) 296
PpsI GAGTC 2 cut(s) 586, 739
Ppu21I YACGTR 2 cut(s) 296, 401
PshBI ATTAAT 1 cut(s) 435
PspCI CACGTG 1 cut(s) 296
PspEI GGTNACC 1 cut(s) 797
PspN4I GGNNCC 2 cut(s) 192, 693
PspPI GGNCC 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 1 cut(s) 748
PvuII CAGCTG 2 cut(s) 494, 698
RsaI GTAC 2 cut(s) 156, 693
RsaNI GTAC 2 cut(s) 155, 692
SaqAI TTAA 3 cut(s) 338, 435, 609
Sau3AI GATC 4 cut(s) 121, 211, 748, 805
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 2 cut(s) 587, 740
SfaNI GCATC 4 cut(s) 9, 241, 592, 691
SinI GGWCC 1 cut(s) 299
SspI AATATT 2 cut(s) 202, 313
SspMI CTAG 1 cut(s) 723
TaaI ACNGT 3 cut(s) 223, 456, 506
TaiI ACGT 2 cut(s) 298, 403
TaqI TCGA 1 cut(s) 585
TfiI GAWTC 3 cut(s) 368, 407, 773
Tru1I TTAA 3 cut(s) 338, 435, 609
Tru9I TTAA 3 cut(s) 338, 435, 609
TscAI CASTG 2 cut(s) 556, 766
TseFI GTSAC 1 cut(s) 797
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 2 cut(s) 453, 503
TspRI CASTG 2 cut(s) 556, 766
VpaK11BI GGWCC 1 cut(s) 299
VspI ATTAAT 1 cut(s) 435
XapI RAATTY 3 cut(s) 55, 325, 377
XspI CTAG 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.