Rh4DG004400

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000136
Physical Location & Seq
Forward (+)
697775 .. 701149
3375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG004400.1

Sequence Viewer

Length: 807 bp
ATGGATAAGAGTTGGATTGATATACGAGAAACGGACTGGCATAAATATGAAGATGGAGTTGATAGTTTTTTGGAGTTTGCATTCGCCAACAGCGTTGATCAAACAAGGATAAAGTGTCCTTGTAAGCTATGTCGCAACCGCTATTTTAAGTCTAGGGAGGAAGCAAGAGAGGATATACTGGTAGACGGATTTTGGGAAACATATAGAATATGGGATAAACATGGTGAACCTTCCAGACCTGCGGCTGCATGCCAAGGGGTTAACTCTGATTCGGTCCTCATTGATGATATGTTTGGCATGATTAATGAGGCGATTGGGATTCCCACTGCAAATCCTGGTCTAGGTGATGATTTTCCGGATAATACGGATGTTCCGGATGAGTATAAACAACATTGCTTAAAGGTTGTTGGTAGTAGATGGAGGGACTGGAAGTGCCGAGTCAAGACACAATGGTATGATAAATATGAAACGGATGAGCAGCGATTAACATTCATTCCTAGTCAGGTTGTTGGAGAGCAATGGAAGATATTAGTAAAGTATTGGGGTCTTCCGCAAATAAAGGAAATGTGTGAGACAAATAAATCTAGCCGTGCACAAGGAGGAGGTGTCCCTCATAGGACCGGTCGAAAATCTTTTGCTAGACTACGAAAAGAGATGATGGAGAATGGAGAGAAAACAGATCGTGTCAGCATGTTTGTCAAAACAAGAGCAATGAAAACAAAGGATGATGATGGTCAACCAATTGAAATTCATGATGAGGAGGCTACTGCTGTTATTAAGCACCAATATGCACAAATATATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

268

Amino Acids

31.23

Weight (kDa)

5.78

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 76 1.6e-20 Transposase-associated domain
Transposase_24 PF03004 172 - 260 1.2e-16 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccI GTMKAC 1 cut(s) 183
AccIII TCCGGA 2 cut(s) 355, 373
AciI CCGC 3 cut(s) 139, 242, 551
AcsI RAATTY 1 cut(s) 747
AfiI CCNNNNNNNGG 1 cut(s) 341
AgeI ACCGGT 1 cut(s) 620
AgsI TTSAA 1 cut(s) 746
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 1 cut(s) 566
Alw44I GTGCAC 1 cut(s) 591
Aor13HI TCCGGA 2 cut(s) 355, 373
ApaLI GTGCAC 1 cut(s) 591
ApeKI GCWGC 2 cut(s) 245, 478
ApoI RAATTY 1 cut(s) 747
AseI ATTAAT 1 cut(s) 303
AsiGI ACCGGT 1 cut(s) 620
AspS9I GGNCC 2 cut(s) 274, 618
AsuHPI GGTGA 2 cut(s) 236, 356
AvaII GGWCC 2 cut(s) 274, 618
BaeGI GKGCMC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 2 cut(s) 232, 490
BccI CCATC 4 cut(s) 47, 411, 652, 725
BceAI ACGGC 1 cut(s) 573
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 5 cut(s) 153, 341, 498, 585, 639
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 3 cut(s) 243, 246, 479
BlsI GCNGC 3 cut(s) 244, 247, 480
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 2 cut(s) 274, 618
BmgT120I GGNCC 2 cut(s) 274, 618
BmrFI CCNGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 3 cut(s) 355, 373, 620
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse118I RCCGGY 1 cut(s) 620
Bse1I ACTGG 3 cut(s) 41, 183, 431
Bse3DI GCAATG 3 cut(s) 391, 524, 717
BseAI TCCGGA 2 cut(s) 355, 373
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 4 cut(s) 373, 382, 478, 730
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 3 cut(s) 391, 524, 717
BseNI ACTGG 3 cut(s) 41, 183, 431
BseRI GAGGAG 2 cut(s) 615, 773
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 2 cut(s) 232, 490
Bsh1285I CGRYCG 1 cut(s) 625
BshTI ACCGGT 1 cut(s) 620
BsiEI CGRYCG 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 595
BsiSI CCGG 3 cut(s) 356, 374, 621
BslFI GGGAC 2 cut(s) 437, 593
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 437, 593
BsmI GAATGC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 595
Bsp13I TCCGGA 2 cut(s) 355, 373
Bsp143I GATC 2 cut(s) 97, 679
BspACI CCGC 3 cut(s) 139, 242, 551
BspEI TCCGGA 2 cut(s) 355, 373
BspHI TCATGA 1 cut(s) 751
BspMI ACCTGC 1 cut(s) 247
BsrDI GCAATG 3 cut(s) 391, 524, 717
BsrFI RCCGGY 1 cut(s) 620
BsrI ACTGG 3 cut(s) 41, 183, 431
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 2 cut(s) 97, 679
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 250
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 4 cut(s) 373, 382, 478, 730
BstKTI GATC 2 cut(s) 100, 682
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 2 cut(s) 97, 679
BstMCI CGRYCG 1 cut(s) 625
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 2 cut(s) 252, 694
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 595
BstV1I GCAGC 2 cut(s) 232, 490
BstV2I GAAGAC 1 cut(s) 539
BtsCI GGATG 4 cut(s) 373, 382, 478, 730
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 250
CciI TCATGA 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 2 cut(s) 274, 618
CspAI ACCGGT 1 cut(s) 620
CviAII CATG 5 cut(s) 221, 249, 298, 691, 752
CviJI RGCY 4 cut(s) 127, 245, 588, 764
CviKI_1 RGCY 4 cut(s) 127, 245, 588, 764
DpnI GATC 2 cut(s) 99, 681
DpnII GATC 2 cut(s) 97, 679
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 274, 618
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 5 cut(s) 224, 252, 301, 694, 755
FaqI GGGAC 2 cut(s) 437, 593
FatI CATG 5 cut(s) 220, 248, 297, 690, 751
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 243, 246, 479
FokI GGATG 4 cut(s) 380, 389, 485, 737
Fsp4HI GCNGC 3 cut(s) 243, 246, 479
FspBI CTAG 5 cut(s) 153, 341, 498, 585, 639
GluI GCNGC 3 cut(s) 243, 246, 479
HapII CCGG 3 cut(s) 356, 374, 621
Hin1II CATG 5 cut(s) 224, 252, 301, 694, 755
HincII GTYRAC 2 cut(s) 262, 737
HindII GTYRAC 2 cut(s) 262, 737
HinfI GANTC 3 cut(s) 269, 319, 438
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 3 cut(s) 356, 374, 621
HphI GGTGA 2 cut(s) 236, 356
Hpy166II GTNNAC 5 cut(s) 184, 227, 262, 593, 737
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 5 cut(s) 234, 356, 374, 442, 752
Hpy8I GTNNAC 5 cut(s) 184, 227, 262, 593, 737
HpyAV CCTTC 1 cut(s) 240
HpyCH4V TGCA 6 cut(s) 80, 248, 329, 593, 791, 803
Hsp92II CATG 5 cut(s) 224, 252, 301, 694, 755
Kpn2I TCCGGA 2 cut(s) 355, 373
Ksp22I TGATCA 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 97, 679
Lsp1109I GCAGC 2 cut(s) 232, 490
MaeI CTAG 5 cut(s) 153, 341, 498, 585, 639
MalI GATC 2 cut(s) 99, 681
MboI GATC 2 cut(s) 97, 679
MboII GAAGA 3 cut(s) 62, 535, 539
MfeI CAATTG 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 2 cut(s) 741, 747
MlyI GAGTC 1 cut(s) 447
MmeI TCCRAC 1 cut(s) 490
Mph1103I ATGCAT 1 cut(s) 805
MroI TCCGGA 2 cut(s) 355, 373
MseI TTAA 6 cut(s) 147, 261, 303, 398, 485, 777
MslI CAYNNNNRTG 2 cut(s) 45, 786
MspI CCGG 3 cut(s) 356, 374, 621
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 1 cut(s) 336
NdeII GATC 2 cut(s) 97, 679
NlaIII CATG 5 cut(s) 224, 252, 301, 694, 755
NmeAIII GCCGAG 1 cut(s) 461
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 2 cut(s) 252, 694
PaeI GCATGC 1 cut(s) 252
PagI TCATGA 1 cut(s) 751
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 269, 319
PinAI ACCGGT 1 cut(s) 620
PkrI GCNGC 3 cut(s) 244, 247, 480
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 2 cut(s) 274, 618
RseI CAYNNNNRTG 2 cut(s) 45, 786
SaqAI TTAA 6 cut(s) 147, 261, 303, 398, 485, 777
SatI GCNGC 3 cut(s) 243, 246, 479
Sau3AI GATC 2 cut(s) 97, 679
Sau96I GGNCC 2 cut(s) 274, 618
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 595
SetI ASST 7 cut(s) 129, 232, 241, 346, 405, 507, 607
SinI GGWCC 2 cut(s) 274, 618
SmiMI CAYNNNNRTG 2 cut(s) 45, 786
SphI GCATGC 1 cut(s) 252
Sse9I AATT 2 cut(s) 741, 747
SsiI CCGC 3 cut(s) 139, 242, 551
SspMI CTAG 5 cut(s) 153, 341, 498, 585, 639
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 253
TaqI TCGA 1 cut(s) 625
TaqII GACCGA 1 cut(s) 262
TasI AATT 2 cut(s) 741, 747
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 2 cut(s) 269, 319
Tru1I TTAA 6 cut(s) 147, 261, 303, 398, 485, 777
Tru9I TTAA 6 cut(s) 147, 261, 303, 398, 485, 777
TscAI CASTG 1 cut(s) 331
TseI GCWGC 2 cut(s) 245, 478
TspDTI ATGAA 5 cut(s) 63, 480, 481, 728, 740
TspGWI ACGGA 4 cut(s) 47, 201, 380, 485
TspRI CASTG 1 cut(s) 331
VneI GTGCAC 1 cut(s) 591
VpaK11BI GGWCC 2 cut(s) 274, 618
VspI ATTAAT 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 747
XceI RCATGY 2 cut(s) 252, 694
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 5 cut(s) 153, 341, 498, 585, 639
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.