Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000136

Physical Location & Seq

Genomic Coordinates Reverse (-)

4062337 .. 4064090

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCTTCGACTTCCAAAGATTAAACTCAAGACAGAAGTGGATTATGAATGGAACTATGGAAGTTCTGGAACGATGCAGCGTTTGGAAGAAGCACTAATAGCAAAGGATGATGTTCGACTTGTTGGTGTACTTTGGGATAGGATATGCTTGAGCTACAGGCTTCTCTGGATGGGACTTCATGGTTCAAAGAACTATGATACAGTGAAGGAAGCCAAGACTGCTCTTCAGACAGAAGTGGGATCAGTGAATGGGGATTCTGGAATGACGGTACCTGGGATAGTCAGCAGACTATCTATTGCTGGTGATGTGCTGAAATTTTGCTCTTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

111

Amino Acids

12.26

Weight (kDa)

7.68

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica	MD16G1158000.v1.1
prunus_persica	Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata	RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora	Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa	Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha	Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana	Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	129, 270
AgsI	TTSAA	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
AlwI	GGATC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	314
Asp718I	GGTACC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	154
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	11, 169
BsaJI	CCNNGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	112, 174
BseXI	GCAGC	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	202, 268
Bst6I	CTCTTC	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	112, 174
BstKTI	GATC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 218
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	112, 174
BtsIMutI	CAGTG	2 cut(s)	207, 249
Csp6I	GTAC	2 cut(s)	128, 269
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	3 cut(s)	153, 160, 212
CviKI_1	RGCY	3 cut(s)	153, 160, 212
CviQI	GTAC	2 cut(s)	128, 269
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	182
FaiI	YATR	5 cut(s)	45, 57, 145, 180, 195
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	2 cut(s)	119, 181
Fsp4HI	GCNGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	4 cut(s)	28, 66, 166, 258
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	202, 268
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 218
Hsp92II	CATG	1 cut(s)	182
KpnI	GGTACC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	239
LguI	GCTCTTC	1 cut(s)	228
LpnPI	CCDG	7 cut(s)	51, 142, 151, 243, 258, 285, 285
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	63
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	2 cut(s)	98, 215
MluCI	AATT	2 cut(s)	314, 328
MseI	TTAA	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	98, 218
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	270
RsaI	GTAC	2 cut(s)	129, 270
RsaNI	GTAC	2 cut(s)	128, 269
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	2 cut(s)	155, 274
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	26, 148
SmoI	CTYRAG	2 cut(s)	26, 148
Sse9I	AATT	2 cut(s)	314, 328
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	202, 268
TaqI	TCGA	2 cut(s)	7, 115
TasI	AATT	2 cut(s)	314, 328
TatI	WGTACW	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	2 cut(s)	207, 249
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	60, 167
TspRI	CASTG	2 cut(s)	207, 249
XapI	RAATTY	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.