Rroxscaffold_3G00245050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000136
Physical Location & Seq
Forward (+)
37861664 .. 37878594
16931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245050.1

Sequence Viewer

Length: 765 bp
ATGGCAACTGCCGATAACATCATCAAGGCATACATATTGGCTTTGACAAAGGGAAAGCAAAGGTTAAAAAGGGTGGAGATTGGAGAAGAAGAAAGGTTGAAGGTTGAGAGGAAATGGCGGAAGCTCGAAGAGAATTTTCTTTCTTTGGAGATGATGTTTGAATTGTTCGTGACATTCCAGAGTGGCTTACTGACAAAAGTGAGAACTTTAGCATATTGTGGATTAAATTCAAAATCAACTATCCGACTTAACGTTGCAAACAACCGAGGAATAAAGGACTTAGCATATAACAAACAAATTGTGACAAGTTCTAAAAACAAAATTCTAAGGAACAGGAATAAGATTGGAACCCAGAACCCGACTTCTATTGAAATATGCACACCCAGCTCCATCCGCTCCAATCCCATTTCCAAGGCACAGCACTCGCAACCACGGTGTTGTAGGGAGCATGACGAGGAGATGAATTTTCATACCTCATGCAAGCCATTCGGTGACCGTACTCGCTGGAGATTGCAGAGGTTGTCGGAGAAAGTTCGGGGCTTCCAGTCGTCGGTCCTCCGTCTACAGCAGGTGCATGTACGATCCGAGGCCACAGGCGTGACGGCGACGTCAATACGAAGAGAATTCCAGTGGTCCGCCGCTGTGAGGTGGCCGGATGGAGTAGCCCCGGTTGGATCCTCTTTGCGGTTCTCCGGGTCGCGTTTCCGGTCAGAGAGAACTCTGATTCTCTTTCTCTCTCTCGATCCATCTGGCTTTTCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

29.11

Weight (kDa)

10.42

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 559
AasI GACNNNNNNGTC 1 cut(s) 607
AatII GACGTC 1 cut(s) 611
Acc36I ACCTGC 1 cut(s) 559
AccBSI CCGCTC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 562
AccII CGCG 1 cut(s) 700
AciI CCGC 5 cut(s) 118, 394, 636, 639, 685
AclI AACGTT 1 cut(s) 252
AclWI GGATC 4 cut(s) 576, 669, 682, 737
AcoI YGGCCR 1 cut(s) 650
AcsI RAATTY 5 cut(s) 133, 226, 321, 463, 623
AcyI GRCGYC 1 cut(s) 608
AfaI GTAC 2 cut(s) 499, 579
AfiI CCNNNNNNNGG 3 cut(s) 550, 645, 684
AgsI TTSAA 4 cut(s) 100, 161, 231, 371
AleI CACNNNNGTG 1 cut(s) 596
AluBI AGCT 2 cut(s) 124, 387
AluI AGCT 2 cut(s) 124, 387
AlwI GGATC 4 cut(s) 576, 669, 682, 737
AoxI GGCC 2 cut(s) 588, 650
ApoI RAATTY 5 cut(s) 133, 226, 321, 463, 623
AspS9I GGNCC 2 cut(s) 553, 633
AsuC2I CCSGG 2 cut(s) 668, 694
AsuHPI GGTGA 1 cut(s) 503
AvaII GGWCC 2 cut(s) 553, 633
BamHI GGATCC 1 cut(s) 674
BccI CCATC 3 cut(s) 398, 650, 754
BceAI ACGGC 1 cut(s) 618
BcgI CGANNNNNNTGC 4 cut(s) 405, 439, 469, 503
BcnI CCSGG 2 cut(s) 668, 694
BfmI CTRYAG 1 cut(s) 563
BfuAI ACCTGC 1 cut(s) 559
BisI GCNGC 1 cut(s) 639
BlsI GCNGC 1 cut(s) 640
Bme1390I CCNGG 2 cut(s) 668, 694
Bme18I GGWCC 2 cut(s) 553, 633
BmgT120I GGNCC 2 cut(s) 553, 633
BmiI GGNNCC 2 cut(s) 349, 676
BmrFI CCNGG 2 cut(s) 668, 694
BpmI CTGGAG 1 cut(s) 526
BpuMI CCSGG 2 cut(s) 668, 694
BsaHI GRCGYC 1 cut(s) 608
BsaJI CCNNGG 5 cut(s) 265, 411, 431, 585, 666
BsaWI WCCGGW 1 cut(s) 705
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 550, 645, 684
Bse1I ACTGG 2 cut(s) 544, 628
BseDI CCNNGG 5 cut(s) 265, 411, 431, 585, 666
BseGI GGATG 2 cut(s) 390, 661
BseLI CCNNNNNNNGG 3 cut(s) 550, 645, 684
BseNI ACTGG 2 cut(s) 544, 628
BseRI GAGGAG 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 700
BshFI GGCC 2 cut(s) 590, 652
BsiSI CCGG 4 cut(s) 653, 668, 693, 706
BslI CCNNNNNNNGG 3 cut(s) 550, 645, 684
BsnI GGCC 2 cut(s) 590, 652
Bsp143I GATC 3 cut(s) 581, 674, 742
BspACI CCGC 5 cut(s) 118, 394, 636, 639, 685
BspANI GGCC 2 cut(s) 590, 652
BspFNI CGCG 1 cut(s) 700
BspLI GGNNCC 2 cut(s) 349, 676
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 4 cut(s) 576, 669, 682, 737
BsrBI CCGCTC 1 cut(s) 396
BsrI ACTGG 2 cut(s) 544, 628
BssECI CCNNGG 5 cut(s) 265, 411, 431, 585, 666
BssMI GATC 3 cut(s) 581, 674, 742
BssNI GRCGYC 1 cut(s) 608
BssT1I CCWWGG 1 cut(s) 411
Bst4CI ACNGT 2 cut(s) 435, 497
Bst6I CTCTTC 2 cut(s) 123, 613
BstACI GRCGYC 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 2 cut(s) 280, 326
BstDSI CCRYGG 1 cut(s) 431
BstEII GGTNACC 1 cut(s) 491
BstF5I GGATG 2 cut(s) 390, 661
BstFNI CGCG 1 cut(s) 700
BstKTI GATC 3 cut(s) 584, 677, 745
BstMBI GATC 3 cut(s) 581, 674, 742
BstMWI GCNNNNNNNGC 2 cut(s) 384, 393
BstNSI RCATGY 1 cut(s) 578
BstPI GGTNACC 1 cut(s) 491
BstSCI CCNGG 2 cut(s) 666, 692
BstSFI CTRYAG 1 cut(s) 563
BstUI CGCG 1 cut(s) 700
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
BsuRI GGCC 2 cut(s) 590, 652
BtgI CCRYGG 1 cut(s) 431
BtsCI GGATG 2 cut(s) 390, 661
BtsIMutI CAGTG 1 cut(s) 635
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 553, 633
Csp6I GTAC 2 cut(s) 498, 578
CviAII CATG 3 cut(s) 449, 477, 575
CviQI GTAC 2 cut(s) 498, 578
DdeI CTNAG 2 cut(s) 280, 326
DpnI GATC 3 cut(s) 583, 676, 744
DpnII GATC 3 cut(s) 581, 674, 742
DrdI GACNNNNNNGTC 1 cut(s) 607
DseDI GACNNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 650
Eam1104I CTCTTC 2 cut(s) 123, 613
EarI CTCTTC 2 cut(s) 123, 613
EciI GGCGGA 2 cut(s) 133, 625
Eco130I CCWWGG 1 cut(s) 411
Eco47I GGWCC 2 cut(s) 553, 633
Eco91I GGTNACC 1 cut(s) 491
EcoO65I GGTNACC 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 3 cut(s) 452, 480, 578
FatI CATG 3 cut(s) 448, 476, 574
FblI GTMKAC 1 cut(s) 562
Fnu4HI GCNGC 1 cut(s) 639
FokI GGATG 2 cut(s) 377, 668
Fsp4HI GCNGC 1 cut(s) 639
GluI GCNGC 1 cut(s) 639
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 526
HaeIII GGCC 2 cut(s) 590, 652
HapII CCGG 4 cut(s) 653, 668, 693, 706
Hin1I GRCGYC 1 cut(s) 608
Hin1II CATG 3 cut(s) 452, 480, 578
HinfI GANTC 1 cut(s) 724
HpaII CCGG 4 cut(s) 653, 668, 693, 706
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 1 cut(s) 563
Hpy188I TCNGA 5 cut(s) 245, 526, 586, 712, 723
Hpy188III TCNNGA 3 cut(s) 169, 178, 740
Hpy8I GTNNAC 1 cut(s) 563
Hpy99I CGWCG 2 cut(s) 553, 610
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 435, 497
HpyCH4IV ACGT 2 cut(s) 252, 608
HpyCH4V TGCA 5 cut(s) 257, 378, 480, 514, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 393
HpyF3I CTNAG 2 cut(s) 280, 326
HpySE526I ACGT 2 cut(s) 252, 608
Hsp92I GRCGYC 1 cut(s) 608
Hsp92II CATG 3 cut(s) 452, 480, 578
Kzo9I GATC 3 cut(s) 581, 674, 742
LmnI GCTCC 3 cut(s) 392, 401, 445
MaeII ACGT 2 cut(s) 252, 608
MaeIII GTNAC 4 cut(s) 169, 301, 491, 598
MalI GATC 3 cut(s) 583, 676, 744
MbiI CCGCTC 1 cut(s) 396
MboI GATC 3 cut(s) 581, 674, 742
MboII GAAGA 4 cut(s) 98, 101, 140, 630
MflI RGATCY 1 cut(s) 674
MluCI AATT 7 cut(s) 133, 161, 226, 297, 321, 463, 623
MmeI TCCRAC 3 cut(s) 268, 504, 652
MnlI CCTC 9 cut(s) 102, 260, 448, 484, 510, 566, 580, 639, 688
MseI TTAA 3 cut(s) 65, 224, 249
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 4 cut(s) 653, 668, 693, 706
MspR9I CCNGG 2 cut(s) 668, 694
MvnI CGCG 1 cut(s) 700
MwoI GCNNNNNNNGC 2 cut(s) 384, 393
NciI CCSGG 2 cut(s) 668, 694
NdeII GATC 3 cut(s) 581, 674, 742
NlaIII CATG 3 cut(s) 452, 480, 578
NlaIV GGNNCC 2 cut(s) 349, 676
NmuCI GTSAC 4 cut(s) 169, 301, 491, 598
NspI RCATGY 1 cut(s) 578
OliI CACNNNNGTG 1 cut(s) 596
PaqCI CACCTGC 1 cut(s) 559
PfeI GAWTC 1 cut(s) 724
PkrI GCNGC 1 cut(s) 640
Psp1406I AACGTT 1 cut(s) 252
PspEI GGTNACC 1 cut(s) 491
PspFI CCCAGC 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 349, 676
PspPI GGNCC 2 cut(s) 553, 633
PsuI RGATCY 1 cut(s) 674
RsaI GTAC 2 cut(s) 499, 579
RsaNI GTAC 2 cut(s) 498, 578
RseI CAYNNNNRTG 1 cut(s) 596
SaqAI TTAA 3 cut(s) 65, 224, 249
SatI GCNGC 1 cut(s) 639
Sau3AI GATC 3 cut(s) 581, 674, 742
Sau96I GGNCC 2 cut(s) 553, 633
ScrFI CCNGG 2 cut(s) 668, 694
SfcI CTRYAG 1 cut(s) 563
SinI GGWCC 2 cut(s) 553, 633
SmiMI CAYNNNNRTG 1 cut(s) 596
Sse9I AATT 7 cut(s) 133, 161, 226, 297, 321, 463, 623
SsiI CCGC 5 cut(s) 118, 394, 636, 639, 685
StyD4I CCNGG 2 cut(s) 666, 692
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 435, 497
TaiI ACGT 2 cut(s) 255, 611
TaqI TCGA 2 cut(s) 126, 741
TaqII GACCGA 1 cut(s) 541
TasI AATT 7 cut(s) 133, 161, 226, 297, 321, 463, 623
TauI GCSGC 1 cut(s) 641
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 3 cut(s) 65, 224, 249
Tru9I TTAA 3 cut(s) 65, 224, 249
TscAI CASTG 1 cut(s) 635
TseFI GTSAC 4 cut(s) 169, 301, 491, 598
Tsp45I GTSAC 4 cut(s) 169, 301, 491, 598
TspDTI ATGAA 2 cut(s) 458, 476
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 1 cut(s) 635
VpaK11BI GGWCC 2 cut(s) 553, 633
XapI RAATTY 5 cut(s) 133, 226, 321, 463, 623
XceI RCATGY 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 562
ZraI GACGTC 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.