Rh6BG175300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000136
Physical Location & Seq
Reverse (-)
29392410 .. 29395565
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG175300.1

Sequence Viewer

Length: 765 bp
ATGCCTTGGCGATCATGTTATTACCATGAAGAGAACAAGACAAGCAGGTCGACCTCGTACCATGTCTCAACTGTTGGAAGAACTTCATCACGTTCTGGAAGCACAGGTCGCAGTGCAAATGAATCAGCACAGCTGCCTCATCTAGTACCAGCAGTAGAAGAGAAAGTCAATACGCCAATAAGTAAAGTCGCACGAGGACAGAGCAAAGGCATTCTGGAATGGAATACAGGTGTTAAAGTAAATGTTCAATTTAATGGAATCAATTTCCAGCCGGTGGGGGAAAGGGCAGGTCAGCTTAAGTCACAATTGGGTCAAATAGTACGAAATGGCCATAGGGTACCGCTAAATATTCTTGACTGGAAGAAAGTTGGTAATGATGTGAAGGAAGAAATTTGGGAAGAGGTTAAGAAAAACTTGGTGGAAGTCCCTGAAGGTTATAAATCAGTATGCTTGGAAAATTGTAATTTGCTTTGGAAGGACCATAAGAGCAAAACAAAATCATTTCACTATGCGCCCAACAAGGATGATCCTGAACTTGGTTCTAAACATCCTCCGCATATTGTTGCAGAGCAACGGTCTGAGCTTGTTGCATATTGCAGTAGTGAGGATGCAAAGATGATAGCAGAAAAAATTCAATTAATTGGGAGCTGCGTGGCCCATGTCACAAGACTAGTCGAAAACATTTTGTTAAAGTGCGATATGAGATGGAAAAAGCTGGAGAACCAGTTAATAAGTTTAGTGTTTGGAAGAGAACACGTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

254

Amino Acids

28.69

Weight (kDa)

9.04

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AasI GACNNNNNNGTC 1 cut(s) 46
Acc36I ACCTGC 2 cut(s) 36, 278
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 337
AccB7I CCANNNNNTGG 1 cut(s) 274
AccI GTMKAC 1 cut(s) 50
AciI CCGC 2 cut(s) 341, 554
AclWI GGATC 1 cut(s) 521
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 2 cut(s) 390, 630
AcuI CTGAAG 1 cut(s) 450
AcvI CACGTG 1 cut(s) 757
AfaI GTAC 4 cut(s) 59, 147, 321, 339
AfiI CCNNNNNNNGG 2 cut(s) 274, 536
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 2 cut(s) 248, 635
AhlI ACTAGT 1 cut(s) 670
AluBI AGCT 5 cut(s) 133, 295, 583, 648, 715
AluI AGCT 5 cut(s) 133, 295, 583, 648, 715
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 521
AoxI GGCC 2 cut(s) 328, 654
ApeKI GCWGC 2 cut(s) 133, 648
ApoI RAATTY 2 cut(s) 390, 630
AseI ATTAAT 1 cut(s) 638
Asp700I GAANNNNTTC 2 cut(s) 82, 630
Asp718I GGTACC 1 cut(s) 337
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 2 cut(s) 478, 655
AvaII GGWCC 1 cut(s) 478
BalI TGGCCA 1 cut(s) 330
BanI GGYRCC 1 cut(s) 337
BauI CACGAG 1 cut(s) 192
BbrPI CACGTG 1 cut(s) 757
BbvI GCAGC 2 cut(s) 120, 635
BccI CCATC 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 70
BcuI ACTAGT 1 cut(s) 670
BfaI CTAG 2 cut(s) 143, 671
BfrI CTTAAG 1 cut(s) 296
BfuAI ACCTGC 2 cut(s) 36, 278
BisI GCNGC 2 cut(s) 134, 649
BlsI GCNGC 2 cut(s) 135, 650
Bme18I GGWCC 1 cut(s) 478
BmgT120I GGNCC 2 cut(s) 478, 655
BmiI GGNNCC 1 cut(s) 339
BmsI GCATC 1 cut(s) 598
BpmI CTGGAG 1 cut(s) 737
BsaAI YACGTR 1 cut(s) 757
BsaJI CCNNGG 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 536
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 2 cut(s) 362, 724
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 3 cut(s) 529, 547, 613
BseLI CCNNNNNNNGG 2 cut(s) 274, 536
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 2 cut(s) 362, 724
BseXI GCAGC 2 cut(s) 120, 635
BshFI GGCC 2 cut(s) 330, 656
BshNI GGYRCC 1 cut(s) 337
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 274, 536
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 2 cut(s) 330, 656
Bsp143I GATC 2 cut(s) 11, 526
BspACI CCGC 2 cut(s) 341, 554
BspANI GGCC 2 cut(s) 330, 656
BspCNI CTCAG 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 339
BspMI ACCTGC 2 cut(s) 36, 278
BspPI GGATC 1 cut(s) 521
BspT107I GGYRCC 1 cut(s) 337
BspTI CTTAAG 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 2 cut(s) 362, 724
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 2 cut(s) 11, 526
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 5
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 73, 576
Bst6I CTCTTC 4 cut(s) 24, 153, 393, 742
BstAFI CTTAAG 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 757
BstDEI CTNAG 1 cut(s) 579
BstF5I GGATG 3 cut(s) 529, 547, 613
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 2 cut(s) 14, 529
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 11, 526
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 120, 635
BsuRI GGCC 2 cut(s) 330, 656
BtsCI GGATG 3 cut(s) 529, 547, 613
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
BveI ACCTGC 2 cut(s) 36, 278
CfoI GCGC 1 cut(s) 514
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 478, 655
Csp6I GTAC 4 cut(s) 58, 146, 320, 338
CviAII CATG 4 cut(s) 15, 26, 62, 659
CviJI RGCY 8 cut(s) 133, 271, 295, 330, 583, 648, 656, 715
CviKI_1 RGCY 8 cut(s) 133, 271, 295, 330, 583, 648, 656, 715
CviQI GTAC 4 cut(s) 58, 146, 320, 338
DdeI CTNAG 1 cut(s) 579
DpnI GATC 2 cut(s) 13, 528
DpnII GATC 2 cut(s) 11, 526
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 4 cut(s) 24, 153, 393, 742
EarI CTCTTC 4 cut(s) 24, 153, 393, 742
Eco130I CCWWGG 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 450
Eco72I CACGTG 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 4 cut(s) 18, 29, 65, 662
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 1 cut(s) 410
FatI CATG 4 cut(s) 14, 25, 61, 658
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 134, 649
FokI GGATG 3 cut(s) 534, 536, 620
Fsp4HI GCNGC 2 cut(s) 134, 649
FspBI CTAG 2 cut(s) 143, 671
GlaI GCGC 1 cut(s) 513
GluI GCNGC 2 cut(s) 134, 649
GsuI CTGGAG 1 cut(s) 737
HaeIII GGCC 2 cut(s) 330, 656
HapII CCGG 1 cut(s) 272
HhaI GCGC 1 cut(s) 514
Hin1II CATG 4 cut(s) 18, 29, 65, 662
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 122, 258
HpaII CCGG 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 580
Hpy188III TCNNGA 4 cut(s) 96, 215, 353, 530
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 3 cut(s) 376, 425, 469
HpyCH4III ACNGT 2 cut(s) 73, 576
HpyCH4IV ACGT 2 cut(s) 91, 756
HpyCH4V TGCA 5 cut(s) 116, 566, 590, 597, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 2 cut(s) 91, 756
Hsp92II CATG 4 cut(s) 18, 29, 65, 662
HspAI GCGC 1 cut(s) 512
KpnI GGTACC 1 cut(s) 341
Kzo9I GATC 2 cut(s) 11, 526
LmnI GCTCC 1 cut(s) 645
Lsp1109I GCAGC 2 cut(s) 120, 635
LweI GCATC 1 cut(s) 598
MaeI CTAG 2 cut(s) 143, 671
MaeII ACGT 2 cut(s) 91, 756
MaeIII GTNAC 3 cut(s) 300, 661, 757
MalI GATC 2 cut(s) 13, 528
MboI GATC 2 cut(s) 11, 526
MboII GAAGA 7 cut(s) 41, 90, 170, 373, 398, 410, 759
MfeI CAATTG 1 cut(s) 305
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 9 cut(s) 248, 262, 305, 390, 457, 463, 630, 635, 639
MluNI TGGCCA 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 6 cut(s) 64, 147, 188, 394, 561, 598
Mox20I TGGCCA 1 cut(s) 330
MroXI GAANNNNTTC 2 cut(s) 82, 630
MscI TGGCCA 1 cut(s) 330
MseI TTAA 8 cut(s) 234, 252, 297, 405, 638, 689, 728, 763
Msp20I TGGCCA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 133
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 272
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 2 cut(s) 11, 526
NlaIII CATG 4 cut(s) 18, 29, 65, 662
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 3 cut(s) 300, 661, 757
PctI GAATGC 1 cut(s) 210
PdmI GAANNNNTTC 2 cut(s) 82, 630
PfeI GAWTC 2 cut(s) 122, 258
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 135, 650
PmaCI CACGTG 1 cut(s) 757
PmlI CACGTG 1 cut(s) 757
Ppu21I YACGTR 1 cut(s) 757
PshBI ATTAAT 1 cut(s) 638
PsiI TTATAA 1 cut(s) 438
PspCI CACGTG 1 cut(s) 757
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 478, 655
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 4 cut(s) 59, 147, 321, 339
RsaNI GTAC 4 cut(s) 58, 146, 320, 338
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 8 cut(s) 234, 252, 297, 405, 638, 689, 728, 763
SatI GCNGC 2 cut(s) 134, 649
Sau3AI GATC 2 cut(s) 11, 526
Sau96I GGNCC 2 cut(s) 478, 655
SfaNI GCATC 1 cut(s) 598
SinI GGWCC 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SpeI ACTAGT 1 cut(s) 670
Sse9I AATT 9 cut(s) 248, 262, 305, 390, 457, 463, 630, 635, 639
SsiI CCGC 2 cut(s) 341, 554
SspI AATATT 1 cut(s) 349
SspMI CTAG 2 cut(s) 143, 671
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 73, 576
TaiI ACGT 2 cut(s) 94, 759
TaqI TCGA 2 cut(s) 50, 675
TasI AATT 9 cut(s) 248, 262, 305, 390, 457, 463, 630, 635, 639
TfiI GAWTC 2 cut(s) 122, 258
Tru1I TTAA 8 cut(s) 234, 252, 297, 405, 638, 689, 728, 763
Tru9I TTAA 8 cut(s) 234, 252, 297, 405, 638, 689, 728, 763
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 3 cut(s) 300, 661, 757
TseI GCWGC 2 cut(s) 133, 648
Tsp45I GTSAC 3 cut(s) 300, 661, 757
TspDTI ATGAA 3 cut(s) 42, 75, 135
TspRI CASTG 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 478
VspI ATTAAT 1 cut(s) 638
XapI RAATTY 2 cut(s) 390, 630
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 2 cut(s) 82, 630
XspI CTAG 2 cut(s) 143, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.