Rh6AG252700

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000136
Physical Location & Seq
Reverse (-)
44192837 .. 44195986
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG252700.1

Sequence Viewer

Length: 1224 bp
ATGGCACCTAAGAGAACAAAATGTATGTCTATGGAGGAGTTGATTCCGCCTTCTCCTGTGAGACCAAGAAAGGGTCAGTCGCAAGCACGATCAACTAAACGTACGTCTGCTTCTGGTCAGTACAAACGGCCTAGATCTAATACTACTGGAAATCAACAAGAAGCTCAATTGGTGACACCTACAGCTACTCAATCAGAGACATCGCAGCATCATGTGTCTGAAACTAGTCAGGAGGAGCCTGTTACAAATCAATTACATGAGTCAGGTCAAATTACTCAAAGAGCTAAGAAAGGTAGAGGTGCTGCTTGTGGTATGCCTGAGTGGGGAACTGGAAAACTAATTCATATTGAGTTTGATGCTAACTGGATGCCTATTAGTGAAAATGGGAAGGCATTTAGTTCACAACTTGGAATTTTGGCGCGAGATGGAGAGAAAGTTCCTCTAACATATACTTCATGGAATGCCATGCCAGACGATATTTTGGATGCTATTTGGAAAGATGTCAAGGATAATACAGATGTTCCGGATGAGTATAAACAACATTGCTTAAAGGTTGTTGGTAGTAGATGGAGGGATTGGAAGTGCCGAGTCAAGACACAATGGTATGATAAATATGAAACGGATGAGCAGCGATTACAATTCATTCCTAATCAGGTTGTTGGAGAGCAATGGAAGATATTAGTAAAGTATTGGGGTCTTCCGCAAATAAAGATGATGGAGAATGGAGAGAAAACTGATCGTGTCAGCATGTTTATCAAAACAAGAGCAATGAAAACAAAGGATGATGATGGTCAACCAATTGAAATTCATGATGAGGAGGCTACTGCTGTTATTAGTCAATTCAATGAATATTTGGAGGAGAGGCCAGAAGATGAACAAGATAATACTTTTCGTGAAGAGGTATTCACTAAAGTGATGGGAGAAGATGCACATGGACGTGTTCGTATGTATGGAACAGGTGTAACTCCATCTCAAGTGTTTGGTAATTCCAAAGCTTATGAGACTAATGAGAAAAGGACAATTGAGGAAATGGAAAGAAAATACGAGGAAATGGAAAAGAACTATCAGACAAAGCTAGATGATCTTAAATTGAGCCATGAATCTCAATTGGGAGACATGAAATTAAAGTACGATGATGTATCGAATCGTCTCAATCTTTTGATGGCTCATGTTGGTATCCAAGTAAACCCAAGTGGAAGTACAAGTGAACAGACCTTCGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

407

Amino Acids

46.74

Weight (kDa)

5.75

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 239 - 323 3.1e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 2 cut(s) 421, 1220
AccIII TCCGGA 1 cut(s) 523
AciI CCGC 2 cut(s) 47, 701
AcsI RAATTY 2 cut(s) 411, 804
AfaI GTAC 4 cut(s) 103, 122, 1130, 1201
AfiI CCNNNNNNNGG 2 cut(s) 71, 323
AflIII ACRYGT 1 cut(s) 937
AgsI TTSAA 2 cut(s) 803, 844
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 938
AleI CACNNNNGTG 1 cut(s) 911
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 5 cut(s) 164, 185, 284, 995, 1075
AluI AGCT 5 cut(s) 164, 185, 284, 995, 1075
Alw26I GTCTC 5 cut(s) 55, 191, 995, 1107, 1154
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 2 cut(s) 128, 863
ApeKI GCWGC 3 cut(s) 205, 302, 628
ApoI RAATTY 2 cut(s) 411, 804
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AspLEI GCGC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 184
BanI GGYRCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BbsI GAAGAC 1 cut(s) 689
BbvI GCAGC 3 cut(s) 217, 289, 640
BccI CCATC 7 cut(s) 419, 561, 709, 782, 910, 976, 1156
BceAI ACGGC 1 cut(s) 143
BciVI GTATCC 1 cut(s) 1187
BcoDI GTCTC 5 cut(s) 55, 191, 995, 1107, 1154
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 132, 225, 1076
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 1 cut(s) 1187
BglII AGATCT 1 cut(s) 134
BisI GCNGC 3 cut(s) 206, 303, 629
BlsI GCNGC 3 cut(s) 207, 304, 630
BmgBI CACGTC 1 cut(s) 938
BmiI GGNNCC 2 cut(s) 6, 237
BmsI GCATC 5 cut(s) 217, 346, 357, 475, 916
BpiI GAAGAC 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 957
BsaI GGTCTC 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 323
Bse1I ACTGG 3 cut(s) 151, 334, 368
Bse3DI GCAATG 3 cut(s) 541, 674, 774
BseAI TCCGGA 1 cut(s) 523
BseGI GGATG 5 cut(s) 372, 490, 532, 628, 787
BseLI CCNNNNNNNGG 2 cut(s) 71, 323
BseMI GCAATG 3 cut(s) 541, 674, 774
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 3 cut(s) 151, 334, 368
BseRI GAGGAG 4 cut(s) 50, 248, 830, 872
BseXI GCAGC 3 cut(s) 217, 289, 640
Bsh1236I CGCG 2 cut(s) 421, 1220
BshFI GGCC 2 cut(s) 130, 865
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 524
BsiWI CGTACG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 71, 323
BsmAI GTCTC 5 cut(s) 55, 191, 995, 1107, 1154
BsmBI CGTCTC 1 cut(s) 1154
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 2 cut(s) 130, 865
Bso31I GGTCTC 1 cut(s) 55
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 4 cut(s) 89, 134, 736, 1081
BspACI CCGC 2 cut(s) 47, 701
BspANI GGCC 2 cut(s) 130, 865
BspCNI CTCAG 1 cut(s) 310
BspEI TCCGGA 1 cut(s) 523
BspFNI CGCG 2 cut(s) 421, 1220
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 2 cut(s) 6, 237
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 55
BsrDI GCAATG 3 cut(s) 541, 674, 774
BsrI ACTGG 3 cut(s) 151, 334, 368
BssMI GATC 4 cut(s) 89, 134, 736, 1081
Bst6I CTCTTC 1 cut(s) 891
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 9, 285, 318
BstF5I GGATG 5 cut(s) 372, 490, 532, 628, 787
BstFNI CGCG 2 cut(s) 421, 1220
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 4 cut(s) 92, 137, 739, 1084
BstMAI GTCTC 5 cut(s) 55, 191, 995, 1107, 1154
BstMBI GATC 4 cut(s) 89, 134, 736, 1081
BstNSI RCATGY 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 2 cut(s) 421, 1220
BstV1I GCAGC 3 cut(s) 217, 289, 640
BstV2I GAAGAC 1 cut(s) 689
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuI GTATCC 1 cut(s) 1187
BsuRI GGCC 2 cut(s) 130, 865
BtgZI GCGATG 1 cut(s) 186
BtrI CACGTC 1 cut(s) 938
BtsCI GGATG 5 cut(s) 372, 490, 532, 628, 787
Cac8I GCNNGC 1 cut(s) 84
CciI TCATGA 1 cut(s) 808
CfoI GCGC 1 cut(s) 421
Csp6I GTAC 4 cut(s) 102, 121, 1129, 1200
CviQI GTAC 4 cut(s) 102, 121, 1129, 1200
DdeI CTNAG 3 cut(s) 9, 285, 318
DpnI GATC 4 cut(s) 91, 136, 738, 1083
DpnII GATC 4 cut(s) 89, 134, 736, 1081
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
EciI GGCGGA 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 1154
Fnu4HI GCNGC 3 cut(s) 206, 303, 629
FokI GGATG 5 cut(s) 379, 497, 539, 635, 794
Fsp4HI GCNGC 3 cut(s) 206, 303, 629
FspBI CTAG 3 cut(s) 132, 225, 1076
GlaI GCGC 1 cut(s) 420
GluI GCNGC 3 cut(s) 206, 303, 629
HaeIII GGCC 2 cut(s) 130, 865
HapII CCGG 1 cut(s) 524
HhaI GCGC 1 cut(s) 421
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 794
HindII GTYRAC 1 cut(s) 794
HindIII AAGCTT 1 cut(s) 993
HinfI GANTC 5 cut(s) 43, 260, 588, 1100, 1144
HpaII CCGG 1 cut(s) 524
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 4 cut(s) 401, 794, 1186, 1208
Hpy188I TCNGA 3 cut(s) 196, 220, 1068
Hpy188III TCNNGA 5 cut(s) 230, 524, 592, 809, 893
Hpy8I GTNNAC 4 cut(s) 401, 794, 1186, 1208
HpyAV CCTTC 2 cut(s) 60, 382
HpyCH4IV ACGT 3 cut(s) 100, 104, 937
HpyCH4V TGCA 1 cut(s) 929
HpyF3I CTNAG 3 cut(s) 9, 285, 318
HpySE526I ACGT 3 cut(s) 100, 104, 937
HspAI GCGC 1 cut(s) 419
Kpn2I TCCGGA 1 cut(s) 523
Kzo9I GATC 4 cut(s) 89, 134, 736, 1081
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 3 cut(s) 217, 289, 640
LweI GCATC 5 cut(s) 217, 346, 357, 475, 916
MaeI CTAG 3 cut(s) 132, 225, 1076
MaeII ACGT 3 cut(s) 100, 104, 937
MaeIII GTNAC 3 cut(s) 172, 241, 961
MalI GATC 4 cut(s) 91, 136, 738, 1083
MboI GATC 4 cut(s) 89, 134, 736, 1081
MboII GAAGA 5 cut(s) 685, 689, 881, 908, 935
MfeI CAATTG 4 cut(s) 167, 798, 1020, 1106
MflI RGATCY 1 cut(s) 134
MlyI GAGTC 2 cut(s) 269, 597
MmeI TCCRAC 1 cut(s) 640
MroI TCCGGA 1 cut(s) 523
MseI TTAA 3 cut(s) 548, 1086, 1124
MslI CAYNNNNRTG 2 cut(s) 911, 936
MspI CCGG 1 cut(s) 524
MunI CAATTG 4 cut(s) 167, 798, 1020, 1106
Mva1269I GAATGC 1 cut(s) 466
MvnI CGCG 2 cut(s) 421, 1220
NdeII GATC 4 cut(s) 89, 134, 736, 1081
NlaIV GGNNCC 2 cut(s) 6, 237
NmeAIII GCCGAG 1 cut(s) 611
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 751
OliI CACNNNNGTG 1 cut(s) 911
PagI TCATGA 1 cut(s) 808
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 3 cut(s) 43, 1100, 1144
Pfl23II CGTACG 1 cut(s) 101
PkrI GCNGC 3 cut(s) 207, 304, 630
PleI GAGTC 2 cut(s) 268, 596
PpsI GAGTC 2 cut(s) 268, 596
PspLI CGTACG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 6, 237
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 4 cut(s) 103, 122, 1130, 1201
RsaNI GTAC 4 cut(s) 102, 121, 1129, 1200
RseI CAYNNNNRTG 2 cut(s) 911, 936
SaqAI TTAA 3 cut(s) 548, 1086, 1124
SatI GCNGC 3 cut(s) 206, 303, 629
Sau3AI GATC 4 cut(s) 89, 134, 736, 1081
SchI GAGTC 2 cut(s) 269, 597
SfaNI GCATC 5 cut(s) 217, 346, 357, 475, 916
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 911, 936
SmlI CTYRAG 1 cut(s) 972
SmoI CTYRAG 1 cut(s) 972
SpeI ACTAGT 1 cut(s) 224
SsiI CCGC 2 cut(s) 47, 701
SspI AATATT 1 cut(s) 851
SspMI CTAG 3 cut(s) 132, 225, 1076
TaiI ACGT 3 cut(s) 103, 107, 940
TaqI TCGA 1 cut(s) 1142
TatI WGTACW 2 cut(s) 120, 1199
TfiI GAWTC 3 cut(s) 43, 1100, 1144
Tru1I TTAA 3 cut(s) 548, 1086, 1124
Tru9I TTAA 3 cut(s) 548, 1086, 1124
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 3 cut(s) 205, 302, 628
Tsp45I GTSAC 1 cut(s) 172
TspGWI ACGGA 1 cut(s) 635
XapI RAATTY 2 cut(s) 411, 804
XceI RCATGY 1 cut(s) 751
XspI CTAG 3 cut(s) 132, 225, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.