FvH4_1g29802

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000136
Physical Location & Seq
Forward (+)
23342594 .. 23344038
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29802.t1

Sequence Viewer

Length: 723 bp
ATGGTTCCTCCAAATATTATAGCAGATCAATGGACTGTGCTTGTTGCCTATTGGAACACTGAGGATGCAAAGGCAATAGCGACCCGTAATTCAATCAATCGAGAGACACGTGGACCATCTCATAATACTGGTAGAAAGAATTTTGCTCAATTAAGATATGAGATGGAACAAAGTGGAGAAGAATCTGATAAATTTAGTGTGTGCAAAAAAGCACGCAAAGAATCCAATTCAGAAGTTGCCCAAGTCATTAACGAATACAATAGGAAACTGTCACTGGTGAGACCGGTGGAAGACCAAAAGCTCACAGCTGTAAAAGACCGTGTTTTTTATGATGTTATTGGAGAGGATGGTCATGGTTATTGTCGTACCTATGGTTCTATTGTGCCTCGCAATTTGGTATATCCACAAGAACCATTGGAAACTGCTGGTAAAAATGACCTTATAGCCAAAATCACTGAAGAGGTAACAGAGAAACTGAAAGAGTCTTTTGATAAGAAATTGGAGGATGCTATTAAAATGTTTCAAGCTCAGATTGCCAATAATATGGATTGCACAATTGCACATGGGGGAAGAAACACAATTGCACATGGACTGGTACCAGCTGATGCAACAAGTGGCCATGAGGCTAGGAGGGAGTCCATAGGAGAGGGAGATCCTGAGGCCACTACCCATTTTGATTCAACTTCTGATGATGTCACTGGTCACCATGATCCCCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

241

Amino Acids

26.77

Weight (kDa)

5.43

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 9 - 128 4.4e-19 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 595
AccB1I GGYRCC 1 cut(s) 595
AclWI GGATC 2 cut(s) 647, 704
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 2 cut(s) 139, 191
AcuI CTGAAG 1 cut(s) 477
AcvI CACGTG 1 cut(s) 110
AfaI GTAC 2 cut(s) 367, 597
AflIII ACRYGT 1 cut(s) 107
AgeI ACCGGT 1 cut(s) 283
AgsI TTSAA 3 cut(s) 93, 524, 681
AluBI AGCT 4 cut(s) 301, 308, 527, 602
AluI AGCT 4 cut(s) 301, 308, 527, 602
Alw26I GTCTC 2 cut(s) 98, 274
AlwI GGATC 2 cut(s) 647, 704
AoxI GGCC 2 cut(s) 616, 660
ApoI RAATTY 2 cut(s) 139, 191
AsiGI ACCGGT 1 cut(s) 283
Asp718I GGTACC 1 cut(s) 595
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 289, 695
AvaII GGWCC 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 657
BalI TGGCCA 1 cut(s) 618
BanI GGYRCC 1 cut(s) 595
BbrPI CACGTG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 297
BccI CCATC 3 cut(s) 124, 157, 341
BcoDI GTCTC 2 cut(s) 98, 274
BfaI CTAG 1 cut(s) 627
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 6, 597
BmsI GCATC 3 cut(s) 55, 496, 595
BpiI GAAGAC 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 4 cut(s) 133, 279, 597, 703
Bse21I CCTNAGG 1 cut(s) 657
BseGI GGATG 3 cut(s) 70, 352, 511
BseMII CTCAG 3 cut(s) 51, 542, 648
BseNI ACTGG 4 cut(s) 133, 279, 597, 703
BshFI GGCC 2 cut(s) 618, 662
BshNI GGYRCC 1 cut(s) 595
BshTI ACCGGT 1 cut(s) 283
BsiSI CCGG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 98, 274
BsnI GGCC 2 cut(s) 618, 662
Bso31I GGTCTC 1 cut(s) 274
Bsp143I GATC 3 cut(s) 25, 652, 709
BspANI GGCC 2 cut(s) 618, 662
BspCNI CTCAG 3 cut(s) 52, 541, 649
BspLI GGNNCC 2 cut(s) 6, 597
BspPI GGATC 2 cut(s) 647, 704
BspT107I GGYRCC 1 cut(s) 595
BspTNI GGTCTC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 4 cut(s) 133, 279, 597, 703
BssAI RCCGGY 1 cut(s) 283
BssMI GATC 3 cut(s) 25, 652, 709
Bst4CI ACNGT 3 cut(s) 37, 270, 320
Bst6I CTCTTC 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 3 cut(s) 60, 528, 657
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 3 cut(s) 70, 352, 511
BstKTI GATC 3 cut(s) 28, 655, 712
BstMAI GTCTC 2 cut(s) 98, 274
BstMBI GATC 3 cut(s) 25, 652, 709
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstPI GGTNACC 1 cut(s) 701
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 1 cut(s) 544
BstYI RGATCY 1 cut(s) 652
Bsu36I CCTNAGG 1 cut(s) 657
BsuRI GGCC 2 cut(s) 618, 662
BtsCI GGATG 3 cut(s) 70, 352, 511
BtsIMutI CAGTG 4 cut(s) 57, 272, 453, 696
Cac8I GCNNGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 366, 596
CspAI ACCGGT 1 cut(s) 283
CviAII CATG 6 cut(s) 353, 563, 587, 620, 707, 720
CviJI RGCY 8 cut(s) 301, 308, 446, 527, 602, 618, 626, 662
CviKI_1 RGCY 8 cut(s) 301, 308, 446, 527, 602, 618, 626, 662
CviQI GTAC 2 cut(s) 366, 596
DdeI CTNAG 3 cut(s) 60, 528, 657
DpnI GATC 3 cut(s) 27, 654, 711
DpnII GATC 3 cut(s) 25, 652, 709
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 477
Eco72I CACGTG 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 657
Eco91I GGTNACC 1 cut(s) 701
EcoO65I GGTNACC 1 cut(s) 701
FaeI CATG 6 cut(s) 356, 566, 590, 623, 710, 723
FatI CATG 6 cut(s) 352, 562, 586, 619, 706, 719
FokI GGATG 3 cut(s) 77, 359, 518
FspBI CTAG 1 cut(s) 627
HaeIII GGCC 2 cut(s) 618, 662
HapII CCGG 1 cut(s) 284
Hin1II CATG 6 cut(s) 356, 566, 590, 623, 710, 723
HinfI GANTC 5 cut(s) 182, 221, 482, 635, 677
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 289, 695
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 4 cut(s) 187, 232, 531, 688
Hpy188III TCNNGA 2 cut(s) 101, 656
Hpy8I GTNNAC 1 cut(s) 113
HpyCH4III ACNGT 3 cut(s) 37, 270, 320
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 7 cut(s) 68, 204, 552, 560, 584, 608, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 3 cut(s) 60, 528, 657
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 6 cut(s) 356, 566, 590, 623, 710, 723
KpnI GGTACC 1 cut(s) 599
Kzo9I GATC 3 cut(s) 25, 652, 709
LpnPI CCDG 8 cut(s) 114, 260, 297, 411, 578, 612, 669, 684
LweI GCATC 3 cut(s) 55, 496, 595
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 4 cut(s) 270, 463, 694, 701
MalI GATC 3 cut(s) 27, 654, 711
MboI GATC 3 cut(s) 25, 652, 709
MboII GAAGA 4 cut(s) 191, 302, 470, 582
MfeI CAATTG 2 cut(s) 555, 579
MflI RGATCY 1 cut(s) 652
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 9 cut(s) 88, 139, 149, 191, 226, 391, 497, 555, 579
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 2 cut(s) 491, 644
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 3 cut(s) 152, 249, 513
Msp20I TGGCCA 1 cut(s) 618
MspA1I CMGCKG 2 cut(s) 308, 602
MspI CCGG 1 cut(s) 284
MunI CAATTG 2 cut(s) 555, 579
MwoI GCNNNNNNNGC 1 cut(s) 533
NdeII GATC 3 cut(s) 25, 652, 709
NlaIII CATG 6 cut(s) 356, 566, 590, 623, 710, 723
NlaIV GGNNCC 2 cut(s) 6, 597
NmuCI GTSAC 3 cut(s) 270, 694, 701
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PfeI GAWTC 3 cut(s) 182, 221, 677
PinAI ACCGGT 1 cut(s) 283
PleI GAGTC 2 cut(s) 490, 643
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
PpsI GAGTC 2 cut(s) 490, 643
Ppu21I YACGTR 1 cut(s) 110
PspCI CACGTG 1 cut(s) 110
PspEI GGTNACC 1 cut(s) 701
PspN4I GGNNCC 2 cut(s) 6, 597
PspPI GGNCC 1 cut(s) 113
PsrI GAACNNNNNNTAC 2 cut(s) 358, 390
PsuI RGATCY 1 cut(s) 652
PvuII CAGCTG 2 cut(s) 308, 602
RsaI GTAC 2 cut(s) 367, 597
RsaNI GTAC 2 cut(s) 366, 596
SaqAI TTAA 3 cut(s) 152, 249, 513
Sau3AI GATC 3 cut(s) 25, 652, 709
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 2 cut(s) 491, 644
SetI ASST 8 cut(s) 112, 303, 310, 371, 441, 465, 529, 604
SfaNI GCATC 3 cut(s) 55, 496, 595
SinI GGWCC 1 cut(s) 113
Sse9I AATT 9 cut(s) 88, 139, 149, 191, 226, 391, 497, 555, 579
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 627
TaaI ACNGT 3 cut(s) 37, 270, 320
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 100
TasI AATT 9 cut(s) 88, 139, 149, 191, 226, 391, 497, 555, 579
TfiI GAWTC 3 cut(s) 182, 221, 677
Tru1I TTAA 3 cut(s) 152, 249, 513
Tru9I TTAA 3 cut(s) 152, 249, 513
TscAI CASTG 4 cut(s) 64, 279, 460, 703
TseFI GTSAC 3 cut(s) 270, 694, 701
Tsp45I GTSAC 3 cut(s) 270, 694, 701
TspRI CASTG 4 cut(s) 64, 279, 460, 703
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 139, 191
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.