Plant transposase (Ptta/En/Spm family)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_24 | PF03004 | 218 - 335 | 9.7e-18 | Plant transposase (Ptta/En/Spm family) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 908 |
| AcsI | RAATTY | 2 cut(s) | 350, 1136 |
| AcuI | CTGAAG | 1 cut(s) | 240 |
| AcvI | CACGTG | 1 cut(s) | 101 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 2 cut(s) | 843, 1237 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 71, 323, 908 |
| AflIII | ACRYGT | 4 cut(s) | 98, 100, 992, 1204 |
| AgsI | TTSAA | 3 cut(s) | 350, 839, 880 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 420, 452 |
| AluBI | AGCT | 4 cut(s) | 95, 164, 224, 803 |
| AluI | AGCT | 4 cut(s) | 95, 164, 224, 803 |
| Alw21I | GWGCWC | 1 cut(s) | 688 |
| Alw26I | GTCTC | 6 cut(s) | 55, 191, 659, 1031, 1143, 1190 |
| Alw44I | GTGCAC | 1 cut(s) | 684 |
| Ama87I | CYCGRG | 1 cut(s) | 420 |
| AoxI | GGCC | 2 cut(s) | 128, 417 |
| ApaLI | GTGCAC | 1 cut(s) | 684 |
| ApeKI | GCWGC | 2 cut(s) | 302, 628 |
| ApoI | RAATTY | 2 cut(s) | 350, 1136 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 11, 43 |
| AseI | ATTAAT | 1 cut(s) | 273 |
| AspLEI | GCGC | 2 cut(s) | 7, 343 |
| AspS9I | GGNCC | 1 cut(s) | 418 |
| AsuHPI | GGTGA | 1 cut(s) | 184 |
| AvaI | CYCGRG | 1 cut(s) | 420 |
| BaeGI | GKGCMC | 1 cut(s) | 688 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BauI | CACGAG | 1 cut(s) | 257 |
| BbrPI | CACGTG | 1 cut(s) | 101 |
| BbsI | GAAGAC | 1 cut(s) | 1058 |
| Bbv12I | GWGCWC | 1 cut(s) | 688 |
| BbvI | GCAGC | 2 cut(s) | 289, 640 |
| BccI | CCATC | 8 cut(s) | 419, 561, 745, 818, 902, 946, 1012, 1192 |
| BceAI | ACGGC | 3 cut(s) | 143, 666, 848 |
| BciVI | GTATCC | 1 cut(s) | 1223 |
| BcoDI | GTCTC | 6 cut(s) | 55, 191, 659, 1031, 1143, 1190 |
| BfaI | CTAG | 3 cut(s) | 225, 678, 732 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BfuI | GTATCC | 1 cut(s) | 1223 |
| BisI | GCNGC | 2 cut(s) | 303, 629 |
| BlsI | GCNGC | 2 cut(s) | 304, 630 |
| BmeT110I | CYCGRG | 1 cut(s) | 420 |
| BmgT120I | GGNCC | 1 cut(s) | 418 |
| BmiI | GGNNCC | 3 cut(s) | 6, 237, 438 |
| BmsI | GCATC | 3 cut(s) | 217, 346, 357 |
| BpiI | GAAGAC | 1 cut(s) | 1058 |
| BpuEI | CTTGAG | 1 cut(s) | 993 |
| BsaAI | YACGTR | 1 cut(s) | 101 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 55 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 684, 714 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 71, 323, 908 |
| Bse1I | ACTGG | 2 cut(s) | 334, 718 |
| Bse3DI | GCAATG | 1 cut(s) | 541 |
| BseGI | GGATG | 3 cut(s) | 372, 490, 523 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 71, 323, 908 |
| BseMI | GCAATG | 1 cut(s) | 541 |
| BseMII | CTCAG | 1 cut(s) | 1026 |
| BseNI | ACTGG | 2 cut(s) | 334, 718 |
| BseRI | GAGGAG | 4 cut(s) | 50, 248, 708, 866 |
| BseSI | GKGCMC | 1 cut(s) | 688 |
| BseXI | GCAGC | 2 cut(s) | 289, 640 |
| BshFI | GGCC | 2 cut(s) | 130, 419 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BsiHKAI | GWGCWC | 1 cut(s) | 688 |
| BsiHKCI | CYCGRG | 1 cut(s) | 420 |
| BslFI | GGGAC | 2 cut(s) | 686, 908 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 71, 323, 908 |
| BsmAI | GTCTC | 6 cut(s) | 55, 191, 659, 1031, 1143, 1190 |
| BsmBI | CGTCTC | 2 cut(s) | 659, 1190 |
| BsmFI | GGGAC | 2 cut(s) | 686, 908 |
| BsmI | GAATGC | 1 cut(s) | 638 |
| BsnI | GGCC | 2 cut(s) | 130, 419 |
| Bso31I | GGTCTC | 1 cut(s) | 55 |
| BsoBI | CYCGRG | 1 cut(s) | 420 |
| Bsp1286I | GDGCHC | 1 cut(s) | 688 |
| Bsp143I | GATC | 3 cut(s) | 89, 772, 1117 |
| BspANI | GGCC | 2 cut(s) | 130, 419 |
| BspCNI | CTCAG | 1 cut(s) | 1027 |
| BspLI | GGNNCC | 3 cut(s) | 6, 237, 438 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BspTNI | GGTCTC | 1 cut(s) | 55 |
| BsrDI | GCAATG | 1 cut(s) | 541 |
| BsrI | ACTGG | 2 cut(s) | 334, 718 |
| BssMI | GATC | 3 cut(s) | 89, 772, 1117 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssSI | CACGAG | 1 cut(s) | 257 |
| Bst2BI | CACGAG | 1 cut(s) | 257 |
| Bst6I | CTCTTC | 1 cut(s) | 927 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstBAI | YACGTR | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 2 cut(s) | 9, 1035 |
| BstF5I | GGATG | 3 cut(s) | 372, 490, 523 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 2 cut(s) | 7, 343 |
| BstKTI | GATC | 3 cut(s) | 92, 775, 1120 |
| BstMAI | GTCTC | 6 cut(s) | 55, 191, 659, 1031, 1143, 1190 |
| BstMBI | GATC | 3 cut(s) | 89, 772, 1117 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNSI | RCATGY | 5 cut(s) | 787, 901, 985, 996, 1208 |
| BstSLI | GKGCMC | 1 cut(s) | 688 |
| BstV1I | GCAGC | 2 cut(s) | 289, 640 |
| BstV2I | GAAGAC | 1 cut(s) | 1058 |
| BsuI | GTATCC | 1 cut(s) | 1223 |
| BsuRI | GGCC | 2 cut(s) | 130, 419 |
| BtsCI | GGATG | 3 cut(s) | 372, 490, 523 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| CfoI | GCGC | 2 cut(s) | 7, 343 |
| Cfr13I | GGNCC | 1 cut(s) | 418 |
| Csp6I | GTAC | 2 cut(s) | 842, 1236 |
| CviQI | GTAC | 2 cut(s) | 842, 1236 |
| DdeI | CTNAG | 2 cut(s) | 9, 1035 |
| DinI | GGCGCC | 1 cut(s) | 6 |
| DpnI | GATC | 3 cut(s) | 91, 774, 1119 |
| DpnII | GATC | 3 cut(s) | 89, 772, 1117 |
| Eam1104I | CTCTTC | 1 cut(s) | 927 |
| EarI | CTCTTC | 1 cut(s) | 927 |
| Eco31I | GGTCTC | 1 cut(s) | 55 |
| Eco57I | CTGAAG | 1 cut(s) | 240 |
| Eco72I | CACGTG | 1 cut(s) | 101 |
| Eco88I | CYCGRG | 1 cut(s) | 420 |
| EcoRI | GAATTC | 1 cut(s) | 1136 |
| EgeI | GGCGCC | 1 cut(s) | 6 |
| EheI | GGCGCC | 1 cut(s) | 6 |
| Esp3I | CGTCTC | 2 cut(s) | 659, 1190 |
| FaqI | GGGAC | 2 cut(s) | 686, 908 |
| Fnu4HI | GCNGC | 2 cut(s) | 303, 629 |
| FokI | GGATG | 3 cut(s) | 379, 497, 530 |
| Fsp4HI | GCNGC | 2 cut(s) | 303, 629 |
| FspBI | CTAG | 3 cut(s) | 225, 678, 732 |
| GlaI | GCGC | 2 cut(s) | 6, 342 |
| GluI | GCNGC | 2 cut(s) | 303, 629 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 2 cut(s) | 130, 419 |
| HhaI | GCGC | 2 cut(s) | 7, 343 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin6I | GCGC | 2 cut(s) | 5, 341 |
| HinP1I | GCGC | 2 cut(s) | 5, 341 |
| HincII | GTYRAC | 1 cut(s) | 830 |
| HindII | GTYRAC | 1 cut(s) | 830 |
| HinfI | GANTC | 5 cut(s) | 43, 260, 411, 588, 1180 |
| HphI | GGTGA | 1 cut(s) | 184 |
| Hpy166II | GTNNAC | 6 cut(s) | 401, 459, 686, 830, 1222, 1244 |
| Hpy188I | TCNGA | 3 cut(s) | 196, 220, 1036 |
| Hpy188III | TCNNGA | 6 cut(s) | 147, 230, 524, 592, 653, 929 |
| Hpy8I | GTNNAC | 6 cut(s) | 401, 459, 686, 830, 1222, 1244 |
| HpyAV | CCTTC | 3 cut(s) | 60, 382, 427 |
| HpyCH4IV | ACGT | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 2 cut(s) | 82, 686 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 2 cut(s) | 9, 1035 |
| HpySE526I | ACGT | 1 cut(s) | 100 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| HspAI | GCGC | 2 cut(s) | 5, 341 |
| KasI | GGCGCC | 1 cut(s) | 4 |
| Kzo9I | GATC | 3 cut(s) | 89, 772, 1117 |
| LmnI | GCTCC | 1 cut(s) | 235 |
| Lsp1109I | GCAGC | 2 cut(s) | 289, 640 |
| LweI | GCATC | 3 cut(s) | 217, 346, 357 |
| MaeI | CTAG | 3 cut(s) | 225, 678, 732 |
| MaeII | ACGT | 1 cut(s) | 100 |
| MaeIII | GTNAC | 4 cut(s) | 172, 241, 997, 1019 |
| MalI | GATC | 3 cut(s) | 91, 774, 1119 |
| MboI | GATC | 3 cut(s) | 89, 772, 1117 |
| MboII | GAAGA | 5 cut(s) | 917, 944, 971, 1063, 1181 |
| MfeI | CAATTG | 6 cut(s) | 167, 183, 834, 1056, 1077, 1142 |
| MhlI | GDGCHC | 1 cut(s) | 688 |
| Mly113I | GGCGCC | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 269, 597 |
| MseI | TTAA | 4 cut(s) | 273, 285, 548, 1160 |
| MslI | CAYNNNNRTG | 1 cut(s) | 972 |
| MunI | CAATTG | 6 cut(s) | 167, 183, 834, 1056, 1077, 1142 |
| Mva1269I | GAATGC | 1 cut(s) | 638 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NarI | GGCGCC | 1 cut(s) | 5 |
| NdeII | GATC | 3 cut(s) | 89, 772, 1117 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 237, 438 |
| NmuCI | GTSAC | 1 cut(s) | 172 |
| NspI | RCATGY | 5 cut(s) | 787, 901, 985, 996, 1208 |
| PciI | ACATGT | 2 cut(s) | 992, 1204 |
| PctI | GAATGC | 1 cut(s) | 638 |
| PfeI | GAWTC | 3 cut(s) | 43, 411, 1180 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 908 |
| PkrI | GCNGC | 2 cut(s) | 304, 630 |
| PleI | GAGTC | 2 cut(s) | 268, 596 |
| PluTI | GGCGCC | 1 cut(s) | 8 |
| PmaCI | CACGTG | 1 cut(s) | 101 |
| PmlI | CACGTG | 1 cut(s) | 101 |
| PpsI | GAGTC | 2 cut(s) | 268, 596 |
| Ppu21I | YACGTR | 1 cut(s) | 101 |
| PscI | ACATGT | 2 cut(s) | 992, 1204 |
| PshBI | ATTAAT | 1 cut(s) | 273 |
| PspCI | CACGTG | 1 cut(s) | 101 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 237, 438 |
| PspPI | GGNCC | 1 cut(s) | 418 |
| RsaI | GTAC | 2 cut(s) | 843, 1237 |
| RsaNI | GTAC | 2 cut(s) | 842, 1236 |
| RseI | CAYNNNNRTG | 1 cut(s) | 972 |
| SaqAI | TTAA | 4 cut(s) | 273, 285, 548, 1160 |
| SatI | GCNGC | 2 cut(s) | 303, 629 |
| Sau3AI | GATC | 3 cut(s) | 89, 772, 1117 |
| Sau96I | GGNCC | 1 cut(s) | 418 |
| SchI | GAGTC | 2 cut(s) | 269, 597 |
| SduI | GDGCHC | 1 cut(s) | 688 |
| SfaNI | GCATC | 3 cut(s) | 217, 346, 357 |
| SfoI | GGCGCC | 1 cut(s) | 6 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 972 |
| SmlI | CTYRAG | 1 cut(s) | 1008 |
| SmoI | CTYRAG | 1 cut(s) | 1008 |
| SspDI | GGCGCC | 1 cut(s) | 4 |
| SspI | AATATT | 1 cut(s) | 887 |
| SspMI | CTAG | 3 cut(s) | 225, 678, 732 |
| TaiI | ACGT | 1 cut(s) | 103 |
| TaqI | TCGA | 5 cut(s) | 133, 148, 586, 718, 1178 |
| TatI | WGTACW | 2 cut(s) | 841, 1235 |
| TfiI | GAWTC | 3 cut(s) | 43, 411, 1180 |
| Tru1I | TTAA | 4 cut(s) | 273, 285, 548, 1160 |
| Tru9I | TTAA | 4 cut(s) | 273, 285, 548, 1160 |
| TseFI | GTSAC | 1 cut(s) | 172 |
| TseI | GCWGC | 2 cut(s) | 302, 628 |
| Tsp45I | GTSAC | 1 cut(s) | 172 |
| TspDTI | ATGAA | 8 cut(s) | 291, 543, 630, 821, 897, 1149, 1169, 1182 |
| TspGWI | ACGGA | 1 cut(s) | 530 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 908 |
| VneI | GTGCAC | 1 cut(s) | 684 |
| VspI | ATTAAT | 1 cut(s) | 273 |
| XapI | RAATTY | 2 cut(s) | 350, 1136 |
| XceI | RCATGY | 5 cut(s) | 787, 901, 985, 996, 1208 |
| XspI | CTAG | 3 cut(s) | 225, 678, 732 |