Rorug04G0094300

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000136
Physical Location & Seq
Forward (+)
14673783 .. 14697429
23647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0094300.1

Sequence Viewer

Length: 2007 bp
ATGAGTCACTCAACTGGGTTGCCTTATAACCCAAGCAATGATTTGGAGACCGGTCTGAAGGAGGTTCCTGTTGAGCGCGTGAACCGTGGGGCGGTAGACATCTCTAAAGAAGGCTTGGCAGATTTACTGAAAACAAATTTAGTCAAGGGAATTGATGGGAATGATTTACTAAAGCGGACAAATAAATTTGGATCAAACAAAAATCCTCCAAAAACAGCAACGAGCCACTGGACATGTCTTTGGGAAGCTCTGTACGATTTTACTCGGATCGTATTGGTGATTGCTTTTGTGGGTTCTGTTGTGATGGGTATTATGGAAGAGACTAAAAAGCTGGGATGGCACGATGTATTCAGCGTTGCTATTGTAGCTGCCATGTTCATTTTTATCTCAGTCTTACCTAACTATACTCAAGCTCGTCTCCAGCATATGATTATCAGGGAGAAAATGAGATACAGAGAATTGAAGGTTATCAGAGCTGGTCGACAAGTTCCAGTTTCTATTTGCGATATTGTTGTGGGTGATGTTATATTCCTTGAGTTTGGTGATGAGGTCCCTGCTGATGGCATTTTAATCCGTGGTTGCTCACTTGCAATTGATGAGTCCAGAGTCACTGGAGAGAGCATGATTTTTCACGAGGATTCAAGGAAACCATTTCTACAGTCTGGCTGGAAAGTAGCAGATGGCAGTGCTACTATGCTGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAAGGCTCAGGGCTAGCGCCGATTCAAAAGACACGGAGAAACGGAAGAATAAAACCCACTTGCAGGTGCTTTTAAAGGAGGTTGCTACCTTCATGGGTGCTGTCGGATTCATGGTTGCTGCCATTGTTGCATATGTTGTTTGGATCAGAGACTTCTTTACTGGTGATAGTTCAAATGGAAGTCGTGAACCTGGAAGTACACTTGAAGAAGTCATTCGAATTAGTATTATTGCAGTCGCCATTTTTGTCGTTTCATTACCTGAAGTGCTTCCTTTAATTAGCTTTAAACATAAGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCAATGATGCTGTCTGTGACATGACTGGAATTACTTTGGACAACGTGGATGATGTTCAAGCGGGGATCACGGAAATGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACGATCCTCAAACTGCAAAAGCAATTGCTAGTGAGGTAATTGTTGAAGGAGAAGTGTTCCGACTATCAGAACCTTGTCAGAGAGATGAATTAGCAGAGAAGATTTTGGTAATGCCACGGTCTACCCCCGATGACAAACTTTTGCTTGTGCGAGCACTGCGGAAAAGAGGAAAGGTTGTTGCTGTCACTGGATCTGTCAGTAATGATGCTCGTGCACTACAAGAGGCCGACATTGGTCTTGCTATGGGTGAACAAGCGACTGAAGTTGTTGTTGAGAGTTCAGATATCATAATCTTGGATGGAAATTTCGCTACTGTAGCCAAGGGTTTCAGATGGGGACGATCTATGCATGAAAAGGTTCTGAGAGTTATGCAGCAGCAACTGACAGCCAATATTGTAGCAGTAACTATAAACTGCTTGGCGGCAGTTTACTATGGTCACATTCCGCTCAATGCTGTGGAGTTTGTGTGGGTGAATGTTATCATATTTGGTCTTGGACCACTAGTACTGGCTACTGAATATCCGGCTGAACGCCTGATGGACGAACCCCCTATTGACCAAGGACAACCTCTTACAAAATATATTCGGTGGAAGAGACTGTTGATACAGGTTCTGTACCAAATTATTACCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAAATGATACCAGAGACCACGCCACCAAAGTGAAAAATACAATGATATTCAACACATTTGTTATATGTCAGTTTATCATCATTGAGTTTCTTGGGAAGGCGTTTTTCGTAGTCAGGCTTGACTGGAAAGAGTGGCAGTTTTCCCTCACTCTTGGAATTGTCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

668

Amino Acids

74.21

Weight (kDa)

6.47

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 35 - 96 1.5e-09 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 152 - 248 2.7e-17 P-type ATPase actuator domain
Hydrolase PF00702 368 - 468 9e-06 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 539 - 639 5.7e-14 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AarI CACCTGC 1 cut(s) 784
Acc36I ACCTGC 1 cut(s) 784
AccBSI CCGCTC 1 cut(s) 1621
AccI GTMKAC 3 cut(s) 96, 481, 1295
AccII CGCG 1 cut(s) 78
AciI CCGC 7 cut(s) 92, 175, 1027, 1121, 1333, 1595, 1619
AclWI GGATC 6 cut(s) 199, 275, 881, 1133, 1172, 1372
AcsI RAATTY 4 cut(s) 136, 185, 716, 1477
AcuI CTGAAG 3 cut(s) 77, 1011, 1455
AfaI GTAC 5 cut(s) 254, 928, 1158, 1680, 1790
AfiI CCNNNNNNNGG 3 cut(s) 91, 560, 793
AflIII ACRYGT 1 cut(s) 233
AgeI ACCGGT 1 cut(s) 50
AgsI TTSAA 9 cut(s) 463, 642, 756, 903, 935, 1118, 1220, 1823, 1891
AhlI ACTAGT 1 cut(s) 1675
AjnI CCWGG 1 cut(s) 919
AleI CACNNNNGTG 1 cut(s) 1868
AluBI AGCT 8 cut(s) 248, 331, 368, 413, 476, 1011, 1037, 1145
AluI AGCT 8 cut(s) 248, 331, 368, 413, 476, 1011, 1037, 1145
Alw21I GWGCWC 2 cut(s) 1330, 1390
Alw26I GTCTC 6 cut(s) 41, 314, 422, 873, 1762, 1848
Alw44I GTGCAC 1 cut(s) 1386
AlwI GGATC 6 cut(s) 199, 275, 881, 1133, 1172, 1372
AlwNI CAGNNNCTG 2 cut(s) 1555, 1786
AoxI GGCC 3 cut(s) 1031, 1053, 1398
ApaLI GTGCAC 1 cut(s) 1386
ApeKI GCWGC 4 cut(s) 368, 848, 1546, 1549
ApoI RAATTY 4 cut(s) 136, 185, 716, 1477
AsiGI ACCGGT 1 cut(s) 50
Asp700I GAANNNNTTC 3 cut(s) 942, 996, 1530
AspLEI GCGC 2 cut(s) 78, 749
AspS9I GGNCC 2 cut(s) 550, 1670
AsuHPI GGTGA 6 cut(s) 289, 530, 554, 905, 1433, 1657
AsuII TTCGAA 1 cut(s) 946
AsuNHI GCTAGC 1 cut(s) 743
AvaII GGWCC 2 cut(s) 550, 1670
BaeGI GKGCMC 1 cut(s) 1390
BauI CACGAG 2 cut(s) 632, 1383
Bbv12I GWGCWC 2 cut(s) 1330, 1390
BbvI GCAGC 4 cut(s) 355, 835, 1558, 1561
BccI CCATC 8 cut(s) 149, 298, 330, 554, 674, 1466, 1500, 1705
BciT130I CCWGG 1 cut(s) 921
BcoDI GTCTC 6 cut(s) 41, 314, 422, 873, 1762, 1848
BcuI ACTAGT 1 cut(s) 1675
BfaI CTAG 3 cut(s) 744, 1203, 1676
BfmI CTRYAG 2 cut(s) 656, 1488
BfoI RGCGCY 1 cut(s) 750
BfuAI ACCTGC 1 cut(s) 784
BisI GCNGC 5 cut(s) 369, 849, 1547, 1550, 1596
BlsI GCNGC 5 cut(s) 370, 850, 1548, 1551, 1597
BmcAI AGTACT 1 cut(s) 1680
Bme1390I CCNGG 1 cut(s) 921
Bme18I GGWCC 2 cut(s) 550, 1670
BmgT120I GGNCC 2 cut(s) 550, 1670
BmiI GGNNCC 2 cut(s) 66, 552
BmrFI CCNGG 1 cut(s) 921
BmrI ACTGGG 2 cut(s) 24, 714
BmsI GCATC 2 cut(s) 1057, 1369
BmtI GCTAGC 1 cut(s) 747
BmuI ACTGGG 2 cut(s) 24, 714
BoxI GACNNNNGTC 1 cut(s) 1407
BpmI CTGGAG 2 cut(s) 404, 633
Bpu10I CCTNAGC 1 cut(s) 737
Bpu14I TTCGAA 1 cut(s) 946
BpuEI CTTGAG 2 cut(s) 393, 554
BsaI GGTCTC 2 cut(s) 41, 1848
BsaJI CCNNGG 6 cut(s) 85, 574, 1050, 1289, 1494, 1732
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 1625, 1655
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 560, 793
Bse118I RCCGGY 1 cut(s) 50
Bse3DI GCAATG 2 cut(s) 43, 1069
BseBI CCWGG 1 cut(s) 921
BseDI CCNNGG 6 cut(s) 85, 574, 1050, 1289, 1494, 1732
BseGI GGATG 3 cut(s) 341, 1114, 1477
BseLI CCNNNNNNNGG 3 cut(s) 91, 560, 793
BseMI GCAATG 2 cut(s) 43, 1069
BseMII CTCAG 3 cut(s) 402, 751, 1526
BseSI GKGCMC 1 cut(s) 1390
BseXI GCAGC 4 cut(s) 355, 835, 1558, 1561
BseYI CCCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 1033, 1055, 1400
BshTI ACCGGT 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 1330, 1390
BsiSI CCGG 2 cut(s) 51, 1697
BslFI GGGAC 2 cut(s) 536, 1524
BslI CCNNNNNNNGG 3 cut(s) 91, 560, 793
BsmAI GTCTC 6 cut(s) 41, 314, 422, 873, 1762, 1848
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 536, 1524
BsnI GGCC 3 cut(s) 1033, 1055, 1400
Bso31I GGTCTC 2 cut(s) 41, 1848
Bsp119I TTCGAA 1 cut(s) 946
Bsp1286I GDGCHC 2 cut(s) 1330, 1390
Bsp143I GATC 7 cut(s) 191, 267, 873, 1125, 1177, 1364, 1514
Bsp19I CCATGG 1 cut(s) 1050
BspACI CCGC 7 cut(s) 92, 175, 1027, 1121, 1333, 1595, 1619
BspANI GGCC 3 cut(s) 1033, 1055, 1400
BspCNI CTCAG 3 cut(s) 401, 750, 1527
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 66, 552
BspMI ACCTGC 1 cut(s) 784
BspOI GCTAGC 1 cut(s) 747
BspPI GGATC 6 cut(s) 199, 275, 881, 1133, 1172, 1372
BspT104I TTCGAA 1 cut(s) 946
BspTNI GGTCTC 2 cut(s) 41, 1848
BsrBI CCGCTC 1 cut(s) 1621
BsrDI GCAATG 2 cut(s) 43, 1069
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 6 cut(s) 85, 574, 1050, 1289, 1494, 1732
BssMI GATC 7 cut(s) 191, 267, 873, 1125, 1177, 1364, 1514
BssSI CACGAG 2 cut(s) 632, 1383
BssT1I CCWWGG 3 cut(s) 1050, 1494, 1732
Bst2BI CACGAG 2 cut(s) 632, 1383
Bst2UI CCWGG 1 cut(s) 921
Bst4CI ACNGT 5 cut(s) 86, 660, 1293, 1489, 1773
Bst6I CTCTTC 2 cut(s) 312, 1760
BstBI TTCGAA 1 cut(s) 946
BstC8I GCNNGC 4 cut(s) 745, 1035, 1147, 1326
BstDEI CTNAG 3 cut(s) 388, 737, 1535
BstDSI CCRYGG 4 cut(s) 85, 574, 1050, 1289
BstF5I GGATG 3 cut(s) 341, 1114, 1477
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 750
BstHHI GCGC 2 cut(s) 78, 749
BstKTI GATC 7 cut(s) 194, 270, 876, 1128, 1180, 1367, 1517
BstMAI GTCTC 6 cut(s) 41, 314, 422, 873, 1762, 1848
BstMBI GATC 7 cut(s) 191, 267, 873, 1125, 1177, 1364, 1514
BstMWI GCNNNNNNNGC 5 cut(s) 337, 365, 857, 1330, 1490
BstNI CCWGG 1 cut(s) 921
BstNSI RCATGY 1 cut(s) 237
BstPAI GACNNNNGTC 1 cut(s) 1407
BstSCI CCNGG 1 cut(s) 919
BstSFI CTRYAG 2 cut(s) 656, 1488
BstSLI GKGCMC 1 cut(s) 1390
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 4 cut(s) 355, 835, 1558, 1561
BstX2I RGATCY 1 cut(s) 1364
BstYI RGATCY 1 cut(s) 1364
BsuRI GGCC 3 cut(s) 1033, 1055, 1400
BtgI CCRYGG 4 cut(s) 85, 574, 1050, 1289
BtsCI GGATG 3 cut(s) 341, 1114, 1477
BtsI GCAGTG 2 cut(s) 691, 1328
BtsIMutI CAGTG 5 cut(s) 226, 609, 691, 1328, 1359
BveI ACCTGC 1 cut(s) 784
Cac8I GCNNGC 4 cut(s) 745, 1035, 1147, 1326
CaiI CAGNNNCTG 2 cut(s) 1555, 1786
CfoI GCGC 2 cut(s) 78, 749
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 550, 1670
Csp6I GTAC 5 cut(s) 253, 927, 1157, 1679, 1789
CspAI ACCGGT 1 cut(s) 50
CviAII CATG 9 cut(s) 234, 373, 622, 823, 841, 1051, 1081, 1172, 1523
CviQI GTAC 5 cut(s) 253, 927, 1157, 1679, 1789
DdeI CTNAG 3 cut(s) 388, 737, 1535
DpnI GATC 7 cut(s) 193, 269, 875, 1127, 1179, 1366, 1516
DpnII GATC 7 cut(s) 191, 267, 873, 1125, 1177, 1364, 1514
DraI TTTAAA 2 cut(s) 804, 1015
Eam1104I CTCTTC 2 cut(s) 312, 1760
EarI CTCTTC 2 cut(s) 312, 1760
Eco130I CCWWGG 3 cut(s) 1050, 1494, 1732
Eco31I GGTCTC 2 cut(s) 41, 1848
Eco32I GATATC 1 cut(s) 1459
Eco47I GGWCC 2 cut(s) 550, 1670
Eco57I CTGAAG 3 cut(s) 77, 1011, 1455
EcoO109I RGGNCCY 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 919
EcoRV GATATC 1 cut(s) 1459
EcoT14I CCWWGG 3 cut(s) 1050, 1494, 1732
EcoT22I ATGCAT 1 cut(s) 1524
ErhI CCWWGG 3 cut(s) 1050, 1494, 1732
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 9 cut(s) 237, 376, 625, 826, 844, 1054, 1084, 1175, 1526
FaqI GGGAC 2 cut(s) 536, 1524
FatI CATG 9 cut(s) 233, 372, 621, 822, 840, 1050, 1080, 1171, 1522
FauI CCCGC 1 cut(s) 1114
FauNDI CATATG 2 cut(s) 426, 862
FblI GTMKAC 3 cut(s) 96, 481, 1295
Fnu4HI GCNGC 5 cut(s) 369, 849, 1547, 1550, 1596
FokI GGATG 3 cut(s) 348, 1121, 1484
Fsp4HI GCNGC 5 cut(s) 369, 849, 1547, 1550, 1596
FspBI CTAG 3 cut(s) 744, 1203, 1676
GlaI GCGC 2 cut(s) 77, 748
GluI GCNGC 5 cut(s) 369, 849, 1547, 1550, 1596
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 2 cut(s) 404, 633
HaeII RGCGCY 1 cut(s) 750
HaeIII GGCC 3 cut(s) 1033, 1055, 1400
HapII CCGG 2 cut(s) 51, 1697
HhaI GCGC 2 cut(s) 78, 749
Hin1II CATG 9 cut(s) 237, 376, 625, 826, 844, 1054, 1084, 1175, 1526
Hin6I GCGC 2 cut(s) 76, 747
HinP1I GCGC 2 cut(s) 76, 747
HincII GTYRAC 1 cut(s) 482
HindII GTYRAC 1 cut(s) 482
HinfI GANTC 6 cut(s) 4, 599, 606, 638, 752, 837
HpaII CCGG 2 cut(s) 51, 1697
HphI GGTGA 6 cut(s) 289, 530, 554, 905, 1433, 1657
Hpy188III TCNNGA 3 cut(s) 603, 632, 914
HpyAV CCTTC 7 cut(s) 52, 104, 457, 726, 829, 1214, 1930
HpyCH4III ACNGT 5 cut(s) 86, 660, 1293, 1489, 1773
HpyCH4IV ACGT 1 cut(s) 1104
HpyF10VI GCNNNNNNNGC 5 cut(s) 337, 365, 857, 1330, 1490
HpyF3I CTNAG 3 cut(s) 388, 737, 1535
HpySE526I ACGT 1 cut(s) 1104
Hsp92II CATG 9 cut(s) 237, 376, 625, 826, 844, 1054, 1084, 1175, 1526
HspAI GCGC 2 cut(s) 76, 747
Kzo9I GATC 7 cut(s) 191, 267, 873, 1125, 1177, 1364, 1514
Lsp1109I GCAGC 4 cut(s) 355, 835, 1558, 1561
LweI GCATC 2 cut(s) 1057, 1369
MaeI CTAG 3 cut(s) 744, 1203, 1676
MaeII ACGT 1 cut(s) 1104
MaeIII GTNAC 8 cut(s) 5, 607, 700, 1076, 1165, 1357, 1576, 1610
MalI GATC 7 cut(s) 193, 269, 875, 1127, 1179, 1366, 1516
MbiI CCGCTC 1 cut(s) 1621
MboI GATC 7 cut(s) 191, 267, 873, 1125, 1177, 1364, 1514
MboII GAAGA 5 cut(s) 329, 787, 947, 1285, 1777
MfeI CAATTG 2 cut(s) 591, 1197
MflI RGATCY 1 cut(s) 1364
MhlI GDGCHC 2 cut(s) 1330, 1390
MlyI GAGTC 3 cut(s) 13, 608, 615
MmeI TCCRAC 2 cut(s) 814, 1258
Mph1103I ATGCAT 1 cut(s) 1524
MroXI GAANNNNTTC 3 cut(s) 942, 996, 1530
MseI TTAA 5 cut(s) 569, 803, 1004, 1014, 1152
MslI CAYNNNNRTG 2 cut(s) 1133, 1868
MspA1I CMGCKG 1 cut(s) 1037
MspI CCGG 2 cut(s) 51, 1697
MspR9I CCNGG 1 cut(s) 921
MunI CAATTG 2 cut(s) 591, 1197
MvaI CCWGG 1 cut(s) 921
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 5 cut(s) 337, 365, 857, 1330, 1490
NcoI CCATGG 1 cut(s) 1050
NdeI CATATG 2 cut(s) 426, 862
NdeII GATC 7 cut(s) 191, 267, 873, 1125, 1177, 1364, 1514
NheI GCTAGC 1 cut(s) 743
NlaIII CATG 9 cut(s) 237, 376, 625, 826, 844, 1054, 1084, 1175, 1526
NlaIV GGNNCC 2 cut(s) 66, 552
NmuCI GTSAC 5 cut(s) 5, 607, 1076, 1357, 1610
NsiI ATGCAT 1 cut(s) 1524
NspI RCATGY 1 cut(s) 237
NspV TTCGAA 1 cut(s) 946
OliI CACNNNNGTG 1 cut(s) 1868
PaqCI CACCTGC 1 cut(s) 784
PciI ACATGT 1 cut(s) 233
PdmI GAANNNNTTC 3 cut(s) 942, 996, 1530
PfeI GAWTC 3 cut(s) 638, 752, 837
PinAI ACCGGT 1 cut(s) 50
PkrI GCNGC 5 cut(s) 370, 850, 1548, 1551, 1597
PleI GAGTC 3 cut(s) 12, 607, 614
PpsI GAGTC 3 cut(s) 12, 607, 614
PpuMI RGGWCCY 1 cut(s) 550
PscI ACATGT 1 cut(s) 233
PshAI GACNNNNGTC 1 cut(s) 1407
PsiI TTATAA 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 919
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 919
PspN4I GGNNCC 2 cut(s) 66, 552
PspPI GGNCC 2 cut(s) 550, 1670
PspPPI RGGWCCY 1 cut(s) 550
PstNI CAGNNNCTG 2 cut(s) 1555, 1786
PsuI RGATCY 1 cut(s) 1364
PvuII CAGCTG 1 cut(s) 1037
RsaI GTAC 5 cut(s) 254, 928, 1158, 1680, 1790
RsaNI GTAC 5 cut(s) 253, 927, 1157, 1679, 1789
RseI CAYNNNNRTG 2 cut(s) 1133, 1868
SalI GTCGAC 1 cut(s) 480
SaqAI TTAA 5 cut(s) 569, 803, 1004, 1014, 1152
SatI GCNGC 5 cut(s) 369, 849, 1547, 1550, 1596
Sau3AI GATC 7 cut(s) 191, 267, 873, 1125, 1177, 1364, 1514
Sau96I GGNCC 2 cut(s) 550, 1670
ScaI AGTACT 1 cut(s) 1680
SchI GAGTC 3 cut(s) 13, 608, 615
ScrFI CCNGG 1 cut(s) 921
SduI GDGCHC 2 cut(s) 1330, 1390
SfaNI GCATC 2 cut(s) 1057, 1369
SfcI CTRYAG 2 cut(s) 656, 1488
SfuI TTCGAA 1 cut(s) 946
SinI GGWCC 2 cut(s) 550, 1670
SmiMI CAYNNNNRTG 2 cut(s) 1133, 1868
SmlI CTYRAG 2 cut(s) 408, 533
SmoI CTYRAG 2 cut(s) 408, 533
SpeI ACTAGT 1 cut(s) 1675
SsiI CCGC 7 cut(s) 92, 175, 1027, 1121, 1333, 1595, 1619
SspI AATATT 1 cut(s) 1567
SspMI CTAG 3 cut(s) 744, 1203, 1676
StyD4I CCNGG 1 cut(s) 919
StyI CCWWGG 3 cut(s) 1050, 1494, 1732
TaaI ACNGT 5 cut(s) 86, 660, 1293, 1489, 1773
TaiI ACGT 1 cut(s) 1107
TaqI TCGA 3 cut(s) 481, 946, 2001
TatI WGTACW 2 cut(s) 926, 1678
TauI GCSGC 1 cut(s) 1598
TfiI GAWTC 3 cut(s) 638, 752, 837
Tru1I TTAA 5 cut(s) 569, 803, 1004, 1014, 1152
Tru9I TTAA 5 cut(s) 569, 803, 1004, 1014, 1152
TscAI CASTG 5 cut(s) 233, 616, 691, 1335, 1366
TseFI GTSAC 5 cut(s) 5, 607, 1076, 1357, 1610
TseI GCWGC 4 cut(s) 368, 848, 1546, 1549
Tsp45I GTSAC 5 cut(s) 5, 607, 1076, 1357, 1610
TspDTI ATGAA 6 cut(s) 367, 811, 829, 972, 1275, 1539
TspGWI ACGGA 4 cut(s) 563, 779, 787, 1145
TspRI CASTG 5 cut(s) 233, 616, 691, 1335, 1366
VneI GTGCAC 1 cut(s) 1386
VpaK11BI GGWCC 2 cut(s) 550, 1670
XapI RAATTY 4 cut(s) 136, 185, 716, 1477
XceI RCATGY 1 cut(s) 237
XmiI GTMKAC 3 cut(s) 96, 481, 1295
XmnI GAANNNNTTC 3 cut(s) 942, 996, 1530
XspI CTAG 3 cut(s) 744, 1203, 1676
ZrmI AGTACT 1 cut(s) 1680
Zsp2I ATGCAT 1 cut(s) 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.