Rmu_sc0006952.1_g000002

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006952.1
OG0000136
Physical Location & Seq
Reverse (-)
1836 .. 2303
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006952.1_g000002.1.cds

Sequence Viewer

Length: 468 bp
atgcgaaaacatctcaaagataatgggttcttgagaaaatatacgaattggatttaccatggagaatctccagttgctactgaccatgccaactttaaaattgaaactgaagttgatttaaatgtccaagatgatatgtttgaaatgctgcatgaagctatgggcattctaaatatgggtgaaactaatgatcctccatcagatgatccccaagttgggccaaaccaaactactgctcactttttaaagttgttggaagatgcacaacttccactatatccgggctgtaaacgctttactgcattatcattcattgttcgaatgatgcataataaagttttacatgggtggtcagataaatcattcacgaggttactcaaggacttggctagtgctttcccggaagacgtgttacttcccaagtcctactgttacttcccaagccctactgtgaggctagaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

155

Amino Acids

17.86

Weight (kDa)

5.94

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 185, 200
AcuI CTGAAG 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 215, 216
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 104, 143
AjiI CACGTC 1 cut(s) 409
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AlwI GGATC 2 cut(s) 185, 200
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 2 cut(s) 282, 401
AsuHPI GGTGA 1 cut(s) 191
AsuII TTCGAA 1 cut(s) 319
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BauI CACGAG 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 205
BcnI CCSGG 2 cut(s) 282, 401
BfaI CTAG 2 cut(s) 390, 458
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 2 cut(s) 282, 401
BmgBI CACGTC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 282, 401
BmsI GCATC 2 cut(s) 250, 315
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 319
BpuEI CTTGAG 2 cut(s) 52, 362
BpuMI CCSGG 2 cut(s) 282, 401
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 216
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 215, 216
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 1 cut(s) 220
BsiSI CCGG 2 cut(s) 281, 401
BslI CCNNNNNNNGG 2 cut(s) 215, 216
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 319
Bsp143I GATC 2 cut(s) 190, 205
Bsp19I CCATGG 1 cut(s) 58
BspANI GGCC 1 cut(s) 220
BspPI GGATC 2 cut(s) 185, 200
BspT104I TTCGAA 1 cut(s) 319
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 190, 205
BssSI CACGAG 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 367
Bst4CI ACNGT 2 cut(s) 431, 451
BstBI TTCGAA 1 cut(s) 319
BstDSI CCRYGG 1 cut(s) 58
BstKTI GATC 2 cut(s) 193, 208
BstMBI GATC 2 cut(s) 190, 205
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 280, 399
BstV1I GCAGC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 411
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 218
CviAII CATG 4 cut(s) 59, 86, 152, 344
CviJI RGCY 6 cut(s) 158, 220, 285, 389, 444, 457
CviKI_1 RGCY 6 cut(s) 158, 220, 285, 389, 444, 457
DpnI GATC 2 cut(s) 192, 207
DpnII GATC 2 cut(s) 190, 205
DraI TTTAAA 3 cut(s) 97, 120, 246
Eco130I CCWWGG 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 58
EcoT22I ATGCAT 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 4 cut(s) 62, 89, 155, 347
FatI CATG 4 cut(s) 58, 85, 151, 343
Fnu4HI GCNGC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 2 cut(s) 390, 458
GluI GCNGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 220
HapII CCGG 2 cut(s) 281, 401
Hin1II CATG 4 cut(s) 62, 89, 155, 347
HinfI GANTC 1 cut(s) 65
HpaII CCGG 2 cut(s) 281, 401
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 202, 355
Hpy188III TCNNGA 2 cut(s) 31, 367
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 431, 451
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 4 cut(s) 151, 263, 302, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 4 cut(s) 62, 89, 155, 347
Kzo9I GATC 2 cut(s) 190, 205
LpnPI CCDG 3 cut(s) 84, 294, 414
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 2 cut(s) 250, 315
MaeI CTAG 2 cut(s) 390, 458
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 372, 411, 431
MalI GATC 2 cut(s) 192, 207
MboI GATC 2 cut(s) 190, 205
MboII GAAGA 2 cut(s) 269, 416
MluCI AATT 2 cut(s) 46, 99
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 3 cut(s) 204, 363, 447
Mph1103I ATGCAT 1 cut(s) 330
MseI TTAA 3 cut(s) 96, 119, 245
MspI CCGG 2 cut(s) 281, 401
MspR9I CCNGG 2 cut(s) 282, 401
Mva1269I GAATGC 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 2 cut(s) 282, 401
NcoI CCATGG 1 cut(s) 58
NdeII GATC 2 cut(s) 190, 205
NlaIII CATG 4 cut(s) 62, 89, 155, 347
NsiI ATGCAT 1 cut(s) 330
NspV TTCGAA 1 cut(s) 319
PctI GAATGC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 218
SaqAI TTAA 3 cut(s) 96, 119, 245
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 2 cut(s) 190, 205
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 282, 401
SetI ASST 3 cut(s) 160, 374, 411
SfaNI GCATC 2 cut(s) 250, 315
SfuI TTCGAA 1 cut(s) 319
SmiI ATTTAAAT 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 31, 377
SmoI CTYRAG 2 cut(s) 31, 377
Sse9I AATT 2 cut(s) 46, 99
SspMI CTAG 2 cut(s) 390, 458
StyD4I CCNGG 2 cut(s) 280, 399
StyI CCWWGG 1 cut(s) 58
SwaI ATTTAAAT 1 cut(s) 120
TaaI ACNGT 2 cut(s) 431, 451
TaiI ACGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 319
TasI AATT 2 cut(s) 46, 99
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 3 cut(s) 96, 119, 245
Tru9I TTAA 3 cut(s) 96, 119, 245
TseI GCWGC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 168, 301
XspI CTAG 2 cut(s) 390, 458
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.